LAMC1
laminin subunit gamma 1 | LAMB2

Laminins, a family of extracellular matrix glycoproteins, are the major noncollagenous constituent of basement membranes. They have been implicated in a wide variety of biological processes including cell adhesion, differentiation, migration, signaling, neurite outgrowth and metastasis. Laminins, composed of 3 non identical chains: laminin alpha, beta and gamma (formerly A, B1, and B2, respectively), have a cruciform structure consisting of 3 short arms, each formed by a different chain, and a long arm composed of all 3 chains. Each laminin chain is a multidomain protein encoded by a distinct gene. Several isoforms of each chain have been described. Different alpha, beta and gamma chain isomers combine to give rise to different heterotrimeric laminin isoforms which are designated by Arabic numerals in the order of their discovery, i.e. alpha1beta1gamma1 heterotrimer is laminin 1. The biological functions of the different chains and trimer molecules are largely unknown, but some of the chains have been shown to differ with respect to their tissue distribution, presumably reflecting diverse functions in vivo. This gene encodes the gamma chain isoform laminin, gamma 1. The gamma 1 chain, formerly thought to be a beta chain, contains structural domains similar to beta chains, however, lacks the short alpha region separating domains I and II. The structural organization of this gene also suggested that it had diverged considerably from the beta chain genes. Embryos of transgenic mice in which both alleles of the gamma 1 chain gene were inactivated by homologous recombination, lacked basement membranes, indicating that laminin, gamma 1 chain is necessary for laminin heterotrimer assembly. It has been inferred by analogy with the strikingly similar 3' UTR sequence in mouse laminin gamma 1 cDNA, that multiple polyadenylation sites are utilized in human to generate the 2 different sized mRNAs (5.5 and 7.5 kb) seen on Northern analysis. [provided by RefSeq, Aug 2011]

Member of: DE-2 DE-2.22 Developmental clusters: GC3
Biological processes 56 terms
basement membrane (GO:0005604)basement membrane (GO:0005604)basement membrane (GO:0005604)basement membrane (GO:0005604)basement membrane (GO:0005604)cell adhesion (GO:0007155)cell migration (GO:0016477)endoderm development (GO:0007492)endoplasmic reticulum lumen (GO:0005788)extracellular exosome (GO:0070062)extracellular matrix (GO:0031012)extracellular matrix (GO:0031012)extracellular matrix (GO:0031012)extracellular matrix (GO:0031012)extracellular matrix (GO:0031012)extracellular matrix constituent conferring elasticity (GO:0030023)extracellular matrix disassembly (GO:0022617)extracellular matrix structural constituent (GO:0005201)extracellular matrix structural constituent (GO:0005201)extracellular matrix structural constituent (GO:0005201)extracellular matrix structural constituent (GO:0005201)extracellular region (GO:0005576)extracellular region (GO:0005576)extracellular region (GO:0005576)extracellular region (GO:0005576)hemidesmosome assembly (GO:0031581)laminin-111 trimer (GO:0005606)laminin-111 trimer (GO:0005606)laminin-111 trimer (GO:0005606)laminin-111 trimer (GO:0005606)laminin-121 trimer (GO:0005608)laminin-211 trimer (GO:0005607)laminin-221 trimer (GO:0005609)laminin-311 trimer (GO:0005611)laminin-321 trimer (GO:0005612)laminin-411 trimer (GO:0043257)laminin-421 trimer (GO:0043258)laminin-511 trimer (GO:0043259)laminin-511 trimer (GO:0043259)laminin-521 trimer (GO:0043260)maintenance of blood-brain barrier (GO:0035633)positive regulation of cell adhesion (GO:0045785)positive regulation of epithelial cell proliferation (GO:0050679)positive regulation of integrin-mediated signaling pathway (GO:2001046)positive regulation of muscle cell differentiation (GO:0051149)positive regulation of skeletal muscle acetylcholine-gated channel clustering (GO:1904395)protein-containing complex assembly (GO:0065003)receptor ligand activity (GO:0048018)regulation of basement membrane organization (GO:0110011)regulation of cell adhesion (GO:0030155)regulation of cell migration (GO:0030334)regulation of embryonic development (GO:0045995)signal transduction (GO:0007165)substrate adhesion-dependent cell spreading (GO:0034446)substrate adhesion-dependent cell spreading (GO:0034446)tissue development (GO:0009888)
Expression (TPM)
LAMC1 — as a Regulated Gene

TFs regulating LAMC1 0 TFs

Transcription factors with Perturb-seq knockdown data for LAMC1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = LAMC1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to LAMC1

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of LAMC1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr1:182,789,198–182,790,098 345.0 kb Distal (>10kb) Multiome 771
chr1:182,806,097–182,806,606 328.3 kb Distal (>10kb) Multiome 157
chr1:182,838,565–182,840,149 295.3 kb Distal (>10kb) Multiome 1015
chr1:182,957,895–182,958,423 176.6 kb Distal (>10kb) Multiome 75
chr1:183,022,283–183,024,397 111.4 kb Distal (>10kb) Multiome 950
chr1:183,025,832–183,026,086 2.4 kb Proximal (<10kb) 204
chr1:183,123,151–183,123,596 5.0 kb Proximal (<10kb) 13
chr1:183,185,705–183,186,607 51.5 kb Distal (>10kb) Multiome 380
chr1:183,234,634–183,235,337 100.3 kb Distal (>10kb) Multiome 407
chr1:183,281,539–183,282,030 147.0 kb Distal (>10kb) Multiome 301
chr1:183,331,081–183,331,905 196.8 kb Distal (>10kb) Multiome 224
chr1:183,417,849–183,418,699 283.6 kb Distal (>10kb) Multiome 267

Genome Browser

Genomic view of the LAMC1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr1:182,779,198 – 183,428,699
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq