chr9 : 125,701,423 – 125,701,691
268 bp 83 TFs 1 linked gene
This 268 bp open chromatin element is linked to MAPKAP1 and is bound by 83 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
MAPKAP1 5.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:125,696,423 – 125,706,691
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
83 transcription factors
Source
Cell type
AR 1 dataset
ChIP THP-1_R1881 GSE131381.AR.THP-1_R1881 199 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 268 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 208 bp overlap
ATF3 1 dataset
ChIP primary-dermal-fibroblasts_overexpressed GSE81403.ATF3.primary-dermal-fibroblasts_overexpressed 201 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 200 bp overlap
BRD2 4 datasets
ChIP MDA-MB-231_BAZ2BsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2BsiRNA 205 bp overlap
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 185 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 188 bp overlap
ChIP SUM159PT_MGSK2801 GSE116879.BRD2.SUM159PT_MGSK2801 268 bp overlap
BRD4 15 datasets
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 268 bp overlap
ChIP GM15850_Syn-TEF1 GSE99402.BRD4.GM15850_Syn-TEF1 268 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 248 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 248 bp overlap
ChIP MDA-MB-231_JQ1 GSE116879.BRD4.MDA-MB-231_JQ1 221 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801 268 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801_rDNA 268 bp overlap
ChIP MDA-MB-231_JQ1_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_rDNA 221 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 268 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 268 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 244 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 268 bp overlap
ChIP SUM159PT_DMSO_72h GSE87418.BRD4.SUM159PT_DMSO_72h 227 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 268 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 186 bp overlap
BRD9 1 dataset
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD9.MDA-MB-231_MGSK2801 268 bp overlap
CEBPB 1 dataset
ChIP THP-1_NS1-Pam3csk-4h GSE103477.CEBPB.THP-1_NS1-Pam3csk-4h 178 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 223 bp overlap
CREBBP 2 datasets
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 191 bp overlap
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 268 bp overlap
DAXX 1 dataset
ChIP PC-3 GSE68647.DAXX.PC-3 161 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 268 bp overlap
E2F1 2 datasets
ChIP MDA-MB-231 GSE95303.E2F1.MDA-MB-231 268 bp overlap
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 123 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 225 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 149 bp overlap
EP300 1 dataset
ChIP pulmonary-artery_endothelial-cell_siPFKFB3 GSE89786.EP300.pulmonary-artery_endothelial-cell_siPFKFB3 209 bp overlap
ERG 1 dataset
ChIP RWPE-1 GSE114241.ERG.RWPE-1 268 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 268 bp overlap
EZH2 2 datasets
ChIP GM23248 ENCFF506FWX 268 bp overlap
ChIP GM23248 ENCFF506FWX 142 bp overlap
EZH2_phosphoT487 1 dataset
ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 268 bp overlap
FOS 1 dataset
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 268 bp overlap
FOSL1 2 datasets
ChIP 143B GSE74230.FOSL1.143B 248 bp overlap
ChIP MDA-MB-231 GSE95303.FOSL1.MDA-MB-231 219 bp overlap
FOSL2 1 dataset
ChIP SK-N-SH ENCSR000BVB.FOSL2.SK-N-SH 130 bp overlap
GATA2 1 dataset
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 141 bp overlap
GATA4 1 dataset
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 164 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 268 bp overlap
HIF1A 1 dataset
ChIP PC-3_hypoxia_siCtrl GSE106305.HIF1A.PC-3_hypoxia_siCtrl 208 bp overlap
IKZF2 2 datasets
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 238 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 233 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 167 bp overlap
IRF4 1 dataset
ChIP B-cell GSE142493.IRF4.B-cell 97 bp overlap
JUN 10 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 268 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 268 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 268 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 186 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 268 bp overlap
ChIP HAEC_IL1b_4h GSE89970.JUN.HAEC_IL1b_4h 221 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 268 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 268 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 268 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUN.MCF10A-Er-Src_EtOH 229 bp overlap
JUNB 3 datasets
ChIP GM12878 ENCSR897MMC.JUNB.GM12878 72 bp overlap
ChIP HAEC GSE89970.JUNB.HAEC 268 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUNB.MCF10A-Er-Src_EtOH 240 bp overlap
KDM1A 1 dataset
ChIP keratinocyte_diff GSE57702.KDM1A.keratinocyte_diff 195 bp overlap
KLF4 2 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 155 bp overlap
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 133 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 189 bp overlap
MED1 2 datasets
ChIP GM12878 GSE93080.MED1.GM12878 53 bp overlap
ChIP U-87MG GSE36354.MED1.U-87MG 268 bp overlap
MEF2A 1 dataset
ChIP GM12878 ENCSR000BKB.MEF2A.GM12878 121 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 173 bp overlap
MYB 1 dataset
ChIP CD4_Th1 GSE72266.MYB.CD4_Th1 186 bp overlap
MYC 1 dataset
ChIP BJ_INDUCED GSE36570.MYC.BJ_INDUCED 186 bp overlap
MYOD1 1 dataset
ChIP myoblast GSE50413.MYOD1.myoblast 205 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 268 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 268 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 268 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 268 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 250 bp overlap
ChIP hESC GSE18292.NANOG.hESC 98 bp overlap
NCOR1 1 dataset
ChIP LS180_125 GSE39277.NCOR1.LS180_125 129 bp overlap
NFKB1 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 170 bp overlap
NKX2-1 1 dataset
ChIP NCI-H2087 GSE39998.NKX2-1.NCI-H2087 268 bp overlap
NR3C1 3 datasets
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 248 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 238 bp overlap
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 268 bp overlap
POLR2A 8 datasets
ChIP GM12878 ENCFF263VRI 268 bp overlap
ChIP GM12878 ENCFF412KAE 268 bp overlap
ChIP GM12878 ENCFF899QYP 268 bp overlap
ChIP GM12892 ENCFF245LYF 268 bp overlap
ChIP GM12892 ENCFF542ZFO 268 bp overlap
ChIP GM12892 ENCFF542ZFO 219 bp overlap
ChIP GM19193 ENCFF599VTO 225 bp overlap
ChIP GM19193 ENCFF599VTO 268 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 192 bp overlap
POU5F1 8 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 268 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 268 bp overlap
ChIP OSK GSE81899.POU5F1.OSK 201 bp overlap
ChIP OSKM GSE81899.POU5F1.OSKM 266 bp overlap
ChIP OSvKM GSE81899.POU5F1.OSvKM 133 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 268 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 268 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 220 bp overlap
RAD21 1 dataset
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 268 bp overlap
RBPJ 1 dataset
ChIP SCC_0h GSE156486.RBPJ.SCC_0h 243 bp overlap
RCOR1 1 dataset
ChIP IMR-90 ENCSR000EFG.RCOR1.IMR-90 131 bp overlap
RELA 11 datasets
ChIP GM12878 ENCSR664POU.RELA.GM12878 202 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 232 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 238 bp overlap
ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 189 bp overlap
ChIP aortic-endothelial-cell_IL1B_D28 GSE139377.RELA.aortic-endothelial-cell_IL1B_D28 181 bp overlap
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 175 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 230 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 173 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 268 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 158 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 268 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 268 bp overlap
SIN3A 1 dataset
ChIP H1 ENCFF042ZSL 87 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 268 bp overlap
SMAD1 1 dataset
ChIP GM12878 ENCSR813DCK.SMAD1.GM12878 242 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 205 bp overlap
SMAD2_3 1 dataset
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 173 bp overlap
SMAD3 4 datasets
ChIP BG03 GSE21614.SMAD3.BG03 168 bp overlap
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 268 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 268 bp overlap
ChIP PC-3_hypoxia GSE106305.SMAD3.PC-3_hypoxia 177 bp overlap
SMAD3-HIF1A 1 dataset
ChIP PC-3_hypoxia GSE106305.SMAD3-HIF1A.PC-3_hypoxia 133 bp overlap
SMAD5 1 dataset
ChIP GM12878 ENCSR251OVJ.SMAD5.GM12878 138 bp overlap
SMARCA2 2 datasets
ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 241 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 268 bp overlap
SMARCA4 7 datasets
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 95 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 110 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 202 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 253 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 125 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 268 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 268 bp overlap
SMARCA5 3 datasets
ChIP GM12878 ENCFF327LDR 268 bp overlap
ChIP GM12878 ENCFF327LDR 198 bp overlap
ChIP GM12878 ENCSR706YUH.SMARCA5.GM12878 236 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 268 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 183 bp overlap
SMARCC1 3 datasets
ChIP SCCOHT-1 GSE117734.SMARCC1.SCCOHT-1 249 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 176 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 268 bp overlap
SNAI2 1 dataset
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 161 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 178 bp overlap
SOX4 2 datasets
ChIP MDA-MB-231 GSE104760.SOX4.MDA-MB-231 268 bp overlap
ChIP MDA-MB-231_TGFb GSE104760.SOX4.MDA-MB-231_TGFb 210 bp overlap
SPDEF 1 dataset
ChIP A-549 GSE86957.SPDEF.A-549 268 bp overlap
STAT3 8 datasets
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 240 bp overlap
ChIP MCF-10A ENCSR000DOZ.STAT3.MCF-10A 146 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.STAT3.MCF10A-Er-Src_EtOH 232 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 198 bp overlap
ChIP MDA-MB-231 GSE152203.STAT3.MDA-MB-231 237 bp overlap
ChIP MDA-MB-231_EtOH GSE85579.STAT3.MDA-MB-231_EtOH 151 bp overlap
ChIP SU-DHL-2 GSE50723.STAT3.SU-DHL-2 116 bp overlap
ChIP SUM159PT GSE152203.STAT3.SUM159PT 268 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 215 bp overlap
TBP 4 datasets
ChIP GM12878 ENCFF571OXR 268 bp overlap
ChIP GM12878 ENCSR000DZZ.TBP.GM12878 146 bp overlap
ChIP hESC GSE122298.TBP.hESC 189 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 155 bp overlap
TEAD4 2 datasets
ChIP BJ_fibroblast GSE114367.TEAD4.BJ_fibroblast 162 bp overlap
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 172 bp overlap
TERF2 1 dataset
ChIP LCL GSE55053.TERF2.LCL 192 bp overlap
TP53 2 datasets
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 259 bp overlap
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 263 bp overlap
TRIM22 1 dataset
ChIP GM12878 ENCSR835XKS.TRIM22.GM12878 188 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 195 bp overlap
ZBTB33 1 dataset
ChIP K562 ENCFF427SDV 268 bp overlap
ZEB1 1 dataset
ChIP NCI-H1975_resistant GSE106896.ZEB1.NCI-H1975_resistant 225 bp overlap
ZMYND8 1 dataset
ChIP MDA-MB-231 GSE108833.ZMYND8.MDA-MB-231 168 bp overlap
ZNF687 1 dataset
ChIP GM12878 ENCFF233SGE 268 bp overlap
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