chr9 : 727,859 – 728,508
649 bp 95 TFs 1 linked gene
This 649 bp open chromatin element is linked to KANK1 and is bound by 95 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
KANK1 257.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:722,859 – 733,508
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
95 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 295 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 419 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 146 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 217 bp overlap
Arid3a 1 dataset
Motif ES_0h ES_0h-Arid3a_MA0151.1 6 bp overlap
BACH2 2 datasets
Motif DE_12h DE_12h-BACH2_MA1101.3 11 bp overlap
Motif ES_0h ES_0h-BACH2_MA1101.3 11 bp overlap
BCL11A 2 datasets
Motif DE_12h DE_12h-BCL11A_MA2324.1 7 bp overlap
Motif ES_0h ES_0h-BCL11A_MA2324.1 7 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 199 bp overlap
CTBP1 1 dataset
ChIP MCF-7 ENCSR636EYA.CTBP1.MCF-7 216 bp overlap
DPF2 2 datasets
ChIP MCF-7 ENCFF712EXQ 237 bp overlap
ChIP MCF-7 ENCSR234VCE.DPF2.MCF-7 250 bp overlap
EHF 1 dataset
Motif ES_0h ES_0h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif ES_0h ES_0h-ELF1_MA0473.4 9 bp overlap
ELF3 1 dataset
Motif ES_0h ES_0h-ELF3_MA0640.3 9 bp overlap
EP300 1 dataset
ChIP H1 ENCFF927IYK 245 bp overlap
ESR1 1 dataset
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 172 bp overlap
ETV7 1 dataset
Motif ES_0h ES_0h-ETV7_MA1708.2 9 bp overlap
Ebf2 2 datasets
Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap
Motif ES_0h ES_0h-Ebf2_MA1604.2 9 bp overlap
Elf5 1 dataset
Motif ES_0h ES_0h-Elf5_MA0136.4 8 bp overlap
Erg 1 dataset
Motif ES_0h ES_0h-Erg_MA0474.4 10 bp overlap
GABPA 1 dataset
Motif ES_0h ES_0h-GABPA_MA0062.4 10 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 315 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 649 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 360 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 351 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 350 bp overlap
GRHL2 6 datasets
ChIP HBE GSE46194.GRHL2.HBE 168 bp overlap
ChIP MCF-7 GSE109820.GRHL2.MCF-7 164 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 251 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 189 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 151 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 193 bp overlap
HOXB13 1 dataset
Motif ES_0h ES_0h-HOXB13_MA0901.3 9 bp overlap
HOXB4 2 datasets
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
Motif ES_0h ES_0h-HOXB4_MA1499.2 6 bp overlap
HOXC4 2 datasets
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
Motif ES_0h ES_0h-HOXC4_MA1504.2 6 bp overlap
HOXD4 2 datasets
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Motif ES_0h ES_0h-HOXD4_MA1507.2 6 bp overlap
IKZF2 1 dataset
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif ES_0h ES_0h-Ikzf3_MA1992.2 9 bp overlap
Irf1 2 datasets
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
Motif ES_0h ES_0h-Irf1_MA0050.4 11 bp overlap
JUN 1 dataset
ChIP ESC S34-ESC-d0-JUN-exp2 115 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 431 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 134 bp overlap
MAZ 2 datasets
ChIP MCF-7 ENCFF913ACQ 306 bp overlap
ChIP MCF-7 ENCSR288IJC.MAZ.MCF-7 236 bp overlap
MEIS1 2 datasets
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MITF 2 datasets
ChIP 501-mel GSE137522.MITF.501-mel 326 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 299 bp overlap
MYB 2 datasets
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
Motif ES_0h ES_0h-MYB_MA0100.4 6 bp overlap
MZF1 2 datasets
Motif DE_12h DE_12h-MZF1_MA0056.3 8 bp overlap
Motif ES_0h ES_0h-MZF1_MA0056.3 8 bp overlap
NANOG 8 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 279 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 82 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 333 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 370 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 156 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 360 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 279 bp overlap
ChIP hESC GSE18292.NANOG.hESC 226 bp overlap
NFE2 2 datasets
Motif DE_12h DE_12h-NFE2_MA0841.2 10 bp overlap
Motif ES_0h ES_0h-NFE2_MA0841.2 10 bp overlap
NKX6-3 2 datasets
Motif DE_12h DE_12h-NKX6-3_MA1530.2 8 bp overlap
Motif ES_0h ES_0h-NKX6-3_MA1530.2 8 bp overlap
Nr1h3::Rxra 1 dataset
Motif ES_0h ES_0h-Nr1h3Rxra_MA0494.2 16 bp overlap
OVOL1 1 dataset
ChIP MCF-7 ENCFF537GWI 199 bp overlap
PKNOX1 3 datasets
Motif ES_0h ES_0h-PKNOX1_MA0782.3 10 bp overlap
ChIP MCF-7 ENCFF116OCS 272 bp overlap
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 180 bp overlap
POU2F1::SOX2 1 dataset
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU3F1 1 dataset
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU5F1 5 datasets
ChIP GM23338 ENCFF333SNB 106 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 292 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 66 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 280 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 294 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 203 bp overlap
POU6F1 2 datasets
Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap
Motif ES_0h ES_0h-POU6F1_MA1549.2 7 bp overlap
POU6F2 2 datasets
Motif DE_12h DE_12h-POU6F2_MA0793.2 9 bp overlap
Motif ES_0h ES_0h-POU6F2_MA0793.2 9 bp overlap
RARA 1 dataset
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 173 bp overlap
RBFOX2 3 datasets
ChIP HepG2 ENCFF554DMZ 82 bp overlap
ChIP HepG2 ENCFF939HTZ 87 bp overlap
ChIP HepG2 ENCFF939HTZ 287 bp overlap
RBPJ 2 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
RELA 1 dataset
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 103 bp overlap
RORA 2 datasets
Motif DE_12h DE_12h-RORA_MA0072.2 11 bp overlap
Motif ES_0h ES_0h-RORA_MA0072.2 11 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF042ZSL 337 bp overlap
ChIP H1 ENCFF042ZSL 521 bp overlap
ChIP H1 ENCFF896IJG 301 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 139 bp overlap
SIX1 2 datasets
Motif DE_12h DE_12h-SIX1_MA1118.2 9 bp overlap
Motif ES_0h ES_0h-SIX1_MA1118.2 9 bp overlap
SMAD2 2 datasets
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 75 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 94 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 162 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 184 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 304 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 54 bp overlap
SMAD3 1 dataset
ChIP HCC1954 GSE104760.SMAD3.HCC1954 89 bp overlap
SMARCA4 2 datasets
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 102 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 113 bp overlap
SMARCB1 4 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 193 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 180 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 239 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 174 bp overlap
SMARCC1 4 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 168 bp overlap
ChIP MCF-7 GSE124225.SMARCC1.MCF-7 65 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 156 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 282 bp overlap
SMARCD3 1 dataset
ChIP MCF-7 GSE124225.SMARCD3.MCF-7 70 bp overlap
SMARCE1 2 datasets
ChIP MCF-7 ENCFF890MHF 226 bp overlap
ChIP MCF-7 ENCSR431TLD.SMARCE1.MCF-7 149 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 291 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 242 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 211 bp overlap
SP4 2 datasets
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
STAT3 12 datasets
ChIP HCC1187 GSE152203.STAT3.HCC1187 179 bp overlap
ChIP HCC70 GSE152203.STAT3.HCC70 194 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 329 bp overlap
ChIP MCF-7_jc5834 GSE126004.STAT3.MCF-7_jc5834 186 bp overlap
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 260 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 271 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 259 bp overlap
ChIP T-47D_JC4753 GSE126004.STAT3.T-47D_JC4753 188 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 211 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 266 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 219 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 225 bp overlap
Six4 2 datasets
Motif DE_12h DE_12h-Six4_MA2001.2 7 bp overlap
Motif ES_0h ES_0h-Six4_MA2001.2 7 bp overlap
Stat2 1 dataset
Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap
TBX2 1 dataset
Motif ES_0h ES_0h-TBX2_MA0688.2 9 bp overlap
TBX3 1 dataset
Motif ES_0h ES_0h-TBX3_MA1566.3 9 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 295 bp overlap
TEAD4 7 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 457 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 297 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 242 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 152 bp overlap
ChIP T-47D_Veh GSE125594.TEAD4.T-47D_Veh 208 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 311 bp overlap
TFCP2 2 datasets
Motif DE_12h DE_12h-TFCP2_MA1968.2 9 bp overlap
Motif ES_0h ES_0h-TFCP2_MA1968.2 9 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 254 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 208 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 417 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 272 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 129 bp overlap
YY1AP1 2 datasets
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 223 bp overlap
ChIP T-47D_Veh GSE125594.YY1AP1.T-47D_Veh 230 bp overlap
ZIM3 1 dataset
Motif ES_0h ES_0h-ZIM3_MA1709.2 11 bp overlap
ZNF143 4 datasets
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
Motif ES_0h ES_0h-ZNF143_MA0088.2 16 bp overlap
ChIP MCF-7 GSE76454.ZNF143.MCF-7 136 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 165 bp overlap
ZNF217 1 dataset
ChIP MCF-7 ENCSR465XQW.ZNF217.MCF-7 222 bp overlap
ZNF24 1 dataset
ChIP MCF-7 ENCSR503VTG.ZNF24.MCF-7 73 bp overlap
ZNF263 2 datasets
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
Motif ES_0h ES_0h-ZNF263_MA0528.3 7 bp overlap
ZNF410 2 datasets
Motif DE_12h DE_12h-ZNF410_MA0752.2 16 bp overlap
Motif ES_0h ES_0h-ZNF410_MA0752.2 16 bp overlap
ZNF675 2 datasets
Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap
Motif ES_0h ES_0h-ZNF675_MA1714.2 19 bp overlap
ZNF766 2 datasets
Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap
Motif ES_0h ES_0h-ZNF766_MA2098.1 9 bp overlap
ZSCAN31 2 datasets
Motif DE_12h DE_12h-ZSCAN31_MA1722.2 18 bp overlap
Motif ES_0h ES_0h-ZSCAN31_MA1722.2 18 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 60 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 72 bp overlap
Zfp335 2 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap
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