chr1 : 173,444,884 173,445,886
1,002 bp 83 TFs 0 linked genes
This 1.0 kb open chromatin element has no linked target genes and is bound by 83 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:173,439,884 – 173,450,886
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
83 transcription factors
Source
Cell type
AR 26 datasets
ChIP 22Rv1 GSE96652.AR.22Rv1 150 bp overlap
ChIP 22Rv1_pLKO GSE109748.AR.22Rv1_pLKO 73 bp overlap
ChIP LNCaP GSE43720.AR.LNCaP 159 bp overlap
ChIP LNCaP GSE85558.AR.LNCaP 129 bp overlap
ChIP LNCaP GSE117430.AR.LNCaP 114 bp overlap
ChIP LNCaP GSE110655.AR.LNCaP 87 bp overlap
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 210 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-075 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-075 57 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-744 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-744 59 bp overlap
ChIP LNCaP_Bag-1L_WT_DHT GSE89938.AR.LNCaP_Bag-1L_WT_DHT 60 bp overlap
ChIP LNCaP_DHT GSE43720.AR.LNCaP_DHT 223 bp overlap
ChIP LNCaP_DHT24H GSE58428.AR.LNCaP_DHT24H 131 bp overlap
ChIP LNCaP_DSG GSE114737.AR.LNCaP_DSG 67 bp overlap
ChIP LNCaP_ETOH GSE69043.AR.LNCaP_ETOH 91 bp overlap
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 108 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 249 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 126 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 80 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 105 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 134 bp overlap
ChIP LNCaP_androgen-Y_hypoxia-N GSE114732.AR.LNCaP_androgen-Y_hypoxia-N 60 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 149 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 109 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 291 bp overlap
ChIP VCaP-LTAD_DHT_10nM GSE94577.AR.VCaP-LTAD_DHT_10nM 127 bp overlap
ChIP VCaP-LTAD_DHT_1nM GSE94577.AR.VCaP-LTAD_DHT_1nM 60 bp overlap
ARID5B 1 dataset
ChIP Jurkat GSE97512.ARID5B.Jurkat 203 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 132 bp overlap
BACH2 1 dataset
ChIP OCI-Ly7 GSE44420.BACH2.OCI-Ly7 133 bp overlap
BCL6 4 datasets
ChIP B-cell_GERMINAL_CENTER GSE68349.BCL6.B-cell_GERMINAL_CENTER 477 bp overlap
ChIP B-cell_GERMINAL_CENTER GSE43350.BCL6.B-cell_GERMINAL_CENTER 111 bp overlap
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 172 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 618 bp overlap
BCOR 2 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 136 bp overlap
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 353 bp overlap
BRD2 1 dataset
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 166 bp overlap
BRD4 11 datasets
ChIP Jurkat GSE83777.BRD4.Jurkat 228 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 261 bp overlap
ChIP MM1-S GSE43743.BRD4.MM1-S 95 bp overlap
ChIP MM1-S_DMSO GSE42161.BRD4.MM1-S_DMSO 186 bp overlap
ChIP MM1-S_DMSO GSE42161.BRD4.MM1-S_DMSO 239 bp overlap
ChIP MM1-S_JQ1_150NM GSE49224.BRD4.MM1-S_JQ1_150NM 532 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.BRD4.MM1-S_JQ1_500NM 322 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 681 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 692 bp overlap
ChIP MM1-S_JQ1_5UM GSE42355.BRD4.MM1-S_JQ1_5UM 460 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 313 bp overlap
CDK7 1 dataset
ChIP Jurkat GSE83777.CDK7.Jurkat 123 bp overlap
CDK9 5 datasets
ChIP MM1-S_DMSO GSE42161.CDK9.MM1-S_DMSO 554 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.CDK9.MM1-S_JQ1_5000NM 99 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.CDK9.MM1-S_JQ1_50NM 379 bp overlap
ChIP MOLT-4_DMSO GSE79288.CDK9.MOLT-4_DMSO 311 bp overlap
ChIP MOLT-4_JQ1 GSE79288.CDK9.MOLT-4_JQ1 344 bp overlap
CREBBP 2 datasets
ChIP tonsil_GCBc_p4 GSE89688.CREBBP.tonsil_GCBc_p4 513 bp overlap
ChIP tonsil_GCBc_p4 GSE89688.CREBBP.tonsil_GCBc_p4 190 bp overlap
CRX 2 datasets
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 233 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 274 bp overlap
CTCF 3 datasets
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 274 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 214 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 315 bp overlap
DPRX 1 dataset
Motif DE_48h DE_48h-DPRX_MA1480.2 9 bp overlap
E2F1 1 dataset
ChIP MM1-S GSE80661.E2F1.MM1-S 295 bp overlap
EGR1 1 dataset
ChIP macrophage_D3 GSE136216.EGR1.macrophage_D3 208 bp overlap
ERG 1 dataset
ChIP Jurkat GSE49091.ERG.Jurkat 141 bp overlap
ESR1 1 dataset
ChIP MCF-7_E2_talen GSE94493.ESR1.MCF-7_E2_talen 136 bp overlap
EZH2 2 datasets
ChIP WSU-DLCL2 GSE45982.EZH2.WSU-DLCL2 136 bp overlap
ChIP neural progenitor cell ENCFF018MKA 340 bp overlap
FEZF2 1 dataset
Motif DE_48h DE_48h-FEZF2_MA2341.1 8 bp overlap
FOXA1 6 datasets
ChIP LNCaP-C4-2B_DHT GSE40050.FOXA1.LNCaP-C4-2B_DHT 115 bp overlap
ChIP LNCaP_DHT24H GSE58428.FOXA1.LNCaP_DHT24H 133 bp overlap
ChIP LNCaP_DSG GSE114737.FOXA1.LNCaP_DSG 86 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 63 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 82 bp overlap
ChIP prostate_P7_T GSE130408.FOXA1.prostate_P7_T 127 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_CDT1 GSE92491.FOXA2.BJ1-hTERT_CDT1 52 bp overlap
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 172 bp overlap
ChIP DE DE-FOXA2-1 891 bp overlap
ChIP DE DE-FOXA2-2 881 bp overlap
GATA2 2 datasets
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 70 bp overlap
ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 145 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 405 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 830 bp overlap
ChIP DE DE-GATA4-2 940 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 211 bp overlap
GATA6 12 datasets
ChIP AGS GSE51936.GATA6.AGS 166 bp overlap
ChIP DE DE-GATA6-1 807 bp overlap
ChIP DE DE-GATA6-2 948 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 293 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 264 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 711 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 568 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 252 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 299 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 767 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 712 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 630 bp overlap
GRHL2 5 datasets
ChIP HBE GSE46194.GRHL2.HBE 194 bp overlap
ChIP LNCaP GSE80256.GRHL2.LNCaP 118 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 165 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 125 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 271 bp overlap
HDAC2 1 dataset
ChIP PC-3 GSE147455.HDAC2.PC-3 123 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR563YDA.HDGF.K-562 338 bp overlap
HOXB13 1 dataset
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 51 bp overlap
IRF4 2 datasets
ChIP NCI-H929 GSE142493.IRF4.NCI-H929 169 bp overlap
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 169 bp overlap
JARID2 1 dataset
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 203 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 286 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 62 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 271 bp overlap
MED1 2 datasets
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 383 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 205 bp overlap
MEF2A 1 dataset
ChIP GM12878 ENCSR000BKB.MEF2A.GM12878 145 bp overlap
MEF2B 1 dataset
ChIP tonsil GSE110682.MEF2B.tonsil 878 bp overlap
MYB 3 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 256 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 210 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 131 bp overlap
MYC 2 datasets
ChIP LNCaP_MYC GSE73994.MYC.LNCaP_MYC 93 bp overlap
ChIP MM1-S_DMSO GSE36354.MYC.MM1-S_DMSO 180 bp overlap
NCOR1 1 dataset
ChIP OCI-Ly1 GSE29282.NCOR1.OCI-Ly1 91 bp overlap
NCOR2 1 dataset
ChIP OCI-Ly1 GSE29282.NCOR2.OCI-Ly1 180 bp overlap
NEUROD1 7 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 704 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 373 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 224 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 465 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 694 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 158 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 461 bp overlap
NFIC 1 dataset
ChIP GM12878 ENCSR000BRN.NFIC.GM12878 156 bp overlap
NKX3-1 1 dataset
ChIP LNCaP_DHT GSE28264.NKX3-1.LNCaP_DHT 129 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 265 bp overlap
NR3C1 1 dataset
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 86 bp overlap
OSR2 1 dataset
Motif DE_48h DE_48h-OSR2_MA1646.2 8 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 380 bp overlap
PKNOX1 2 datasets
ChIP GM12878 ENCFF589FCY 388 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 292 bp overlap
POU5F1 1 dataset
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 54 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 161 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 138 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 437 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 302 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-000m 208 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 146 bp overlap
RBPJ 1 dataset
ChIP MUTUL GSE75503.RBPJ.MUTUL 161 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 208 bp overlap
RUNX1 3 datasets
ChIP Jurkat GSE76181.RUNX1.Jurkat 282 bp overlap
ChIP Jurkat GSE29180.RUNX1.Jurkat 171 bp overlap
ChIP Jurkat GSE68976.RUNX1.Jurkat 270 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 176 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 104 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 124 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 615 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 524 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 344 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 293 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 358 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 264 bp overlap
SMAD3 1 dataset
Motif DE_48h DE_48h-SMAD3_MA0795.1 10 bp overlap
SMAD5 1 dataset
Motif DE_48h DE_48h-SMAD5_MA1557.1 10 bp overlap
SMARCA4 6 datasets
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 181 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 227 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 255 bp overlap
ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 219 bp overlap
ChIP CTV-1_delQ GSE128835.SMARCA4.CTV-1_delQ 238 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 496 bp overlap
SMARCB1 2 datasets
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 294 bp overlap
ChIP hiPSC GSE124903.SMARCB1.hiPSC 298 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 260 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 285 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 264 bp overlap
SOX2 3 datasets
ChIP LK2 GSE137459.SOX2.LK2 281 bp overlap
ChIP LK2_DNp63 GSE137459.SOX2.LK2_DNp63 203 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 514 bp overlap
SPI1 1 dataset
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 57 bp overlap
STAT3 1 dataset
ChIP T-47D_JC4753 GSE126004.STAT3.T-47D_JC4753 114 bp overlap
STAT5B 1 dataset
ChIP CD8_H9 GSE64713.STAT5B.CD8_H9 241 bp overlap
Smad4 1 dataset
Motif DE_48h DE_48h-Smad4_MA1153.2 7 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 246 bp overlap
TBX21 2 datasets
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 455 bp overlap
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 50 bp overlap
TCF7 2 datasets
ChIP GM12878 ENCFF749DPM 311 bp overlap
ChIP GM12878 ENCSR501DKS.TCF7.GM12878 153 bp overlap
TEAD4 5 datasets
ChIP MDA-MB-231 GSE66081.TEAD4.MDA-MB-231 234 bp overlap
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 238 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.TEAD4.PC-9_1DF_DMSO 292 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 139 bp overlap
ChIP T-47D_Veh GSE125594.TEAD4.T-47D_Veh 224 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 137 bp overlap
TLE3 1 dataset
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 110 bp overlap
YY1AP1 2 datasets
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 313 bp overlap
ChIP T-47D_Veh GSE125594.YY1AP1.T-47D_Veh 231 bp overlap
ZNF582 1 dataset
Motif DE_48h DE_48h-ZNF582_MA1983.2 19 bp overlap
Zfp809 1 dataset
Motif DE_48h DE_48h-Zfp809_MA2125.1 9 bp overlap