chr1 : 169,682,003 – 169,682,900

897 bp 79 TFs 0 linked genes

This 897 bp open chromatin element has no linked target genes and is bound by 79 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

79 transcription factors

ATF2 1 dataset

ChIP WA01 ENCSR000BQU.ATF2.WA01 138 bp overlap

ATF7 1 dataset

ChIP GM12878 ENCSR014YCR.ATF7.GM12878 396 bp overlap

BACH2 1 dataset

Motif DE_12h DE_12h-BACH2_MA1101.3 11 bp overlap

BCL6 2 datasets

ChIP B-cell_GERMINAL_CENTER GSE68349.BCL6.B-cell_GERMINAL_CENTER 239 bp overlap

ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 358 bp overlap

BCOR 3 datasets

ChIP WA01 GSE104690.BCOR.WA01 202 bp overlap

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 149 bp overlap

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 203 bp overlap

BHLHE40 3 datasets

ChIP GM12878 ENCFF010ZUU 331 bp overlap

ChIP GM12878 ENCFF521IZR 405 bp overlap

ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 215 bp overlap

BORCS8-MEF2B,MEF2B 1 dataset

ChIP GM12878 ENCFF427QAI 560 bp overlap

BRD4 10 datasets

ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 452 bp overlap

ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 897 bp overlap

ChIP CLL_patient3_4h_CpG_BET GSE109411.BRD4.CLL_patient3_4h_CpG_BET 233 bp overlap

ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 897 bp overlap

ChIP CLL_patient4_4h_CpG GSE109411.BRD4.CLL_patient4_4h_CpG 362 bp overlap

ChIP DND41_E GSE54379.BRD4.DND41_E 227 bp overlap

ChIP GM15850_PA1_JQ1 GSE99402.BRD4.GM15850_PA1_JQ1 249 bp overlap

ChIP Jurkat GSE83777.BRD4.Jurkat 329 bp overlap

ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 250 bp overlap

ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 483 bp overlap

CREB1 1 dataset

ChIP WA01 ENCSR000BSN.CREB1.WA01 105 bp overlap

CREBBP 1 dataset

ChIP tonsil_GCBc_p4 GSE89688.CREBBP.tonsil_GCBc_p4 379 bp overlap

DMRTA2 1 dataset

Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap

Dux 1 dataset

Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap

E2F6 1 dataset

Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap

E2F8 1 dataset

Motif DE_12h DE_12h-E2F8_MA0865.3 9 bp overlap

EBF1 5 datasets

Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap

ChIP GM12878 ENCFF167CZS 321 bp overlap

ChIP GM12878 ENCFF813OXE 117 bp overlap

ChIP GM12878 ENCSR000DZQ.EBF1.GM12878 214 bp overlap

ChIP LCL GSE75503.EBF1.LCL 461 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 155 bp overlap

EZH2 1 dataset

ChIP WA01 ENCSR000ASY.EZH2.WA01 359 bp overlap

Ebf4 1 dataset

Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap

FOXA2 1 dataset

ChIP DE DE-FOXA2-1 589 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 622 bp overlap

ChIP DE DE-GATA4-2 697 bp overlap

GATA6 5 datasets

ChIP AGS GSE51936.GATA6.AGS 79 bp overlap

ChIP DE DE-GATA6-1 660 bp overlap

ChIP DE DE-GATA6-2 714 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 480 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 388 bp overlap

IKZF1 1 dataset

ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 260 bp overlap

JUND 1 dataset

ChIP WA01 ENCSR000BKP.JUND.WA01 115 bp overlap

LIN54 1 dataset

Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap

MAZ 1 dataset

Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap

MED1 1 dataset

ChIP GM12878 GSE93080.MED1.GM12878 373 bp overlap

MEF2B 2 datasets

ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 418 bp overlap

ChIP tonsil GSE110682.MEF2B.tonsil 297 bp overlap

MLLT1 1 dataset

ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 439 bp overlap

NANOG 3 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 360 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 330 bp overlap

ChIP hESC GSE18292.NANOG.hESC 126 bp overlap

NBN 1 dataset

ChIP GM12878 ENCSR278SQL.NBN.GM12878 285 bp overlap

NFE2 1 dataset

Motif DE_12h DE_12h-NFE2_MA0841.2 10 bp overlap

NIPBL 2 datasets

ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 208 bp overlap

ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 197 bp overlap

NR1D1 1 dataset

Motif DE_12h DE_12h-NR1D1_MA1531.2 14 bp overlap

NR1D2 1 dataset

Motif DE_12h DE_12h-NR1D2_MA1532.2 15 bp overlap

ONECUT1 1 dataset

Motif DE_12h DE_12h-ONECUT1_MA0679.3 9 bp overlap

OSR2 1 dataset

Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap

PATZ1 1 dataset

Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap

PAX3 1 dataset

Motif DE_12h DE_12h-PAX3_MA1546.2 14 bp overlap

POLR2A 2 datasets

ChIP GM23338 ENCFF450WCS 483 bp overlap

ChIP H1 ENCFF833NJP 154 bp overlap

POU2F1::SOX2 1 dataset

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

POU5F1 7 datasets

ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 161 bp overlap

ChIP H1 ENCFF698ZAP 205 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 429 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 359 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 380 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 217 bp overlap

ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 146 bp overlap

PRDM14 1 dataset

ChIP hESC GSE22767.PRDM14.hESC 392 bp overlap

Pou5f1::Sox2 1 dataset

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

RBPJ 1 dataset

ChIP LCL GSE75503.RBPJ.LCL 169 bp overlap

RELB 1 dataset

ChIP GM12878 ENCSR387QUV.RELB.GM12878 421 bp overlap

RNF2 1 dataset

ChIP WA01 GSE104690.RNF2.WA01 229 bp overlap

RXRA 1 dataset

ChIP WA01 ENCSR000BJW.RXRA.WA01 139 bp overlap

SATB1 2 datasets

ChIP MCF-10A GSE123292.SATB1.MCF-10A 241 bp overlap

ChIP MCF-10A_ICRF GSE123292.SATB1.MCF-10A_ICRF 279 bp overlap

SIX2 2 datasets

ChIP HEK GSE73865.SIX2.HEK 476 bp overlap

ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 275 bp overlap

SKIL 1 dataset

ChIP GM12878 ENCSR212YKD.SKIL.GM12878 212 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 493 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 290 bp overlap

SMAD2_3 1 dataset

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 241 bp overlap

SMARCA4 2 datasets

ChIP hiPSC GSE124903.SMARCA4.hiPSC 187 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 307 bp overlap

SMARCB1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 312 bp overlap

SMARCC1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 321 bp overlap

SOX2 1 dataset

ChIP hiPSC GSE56567.SOX2.hiPSC 258 bp overlap

SP1 1 dataset

ChIP WA01 ENCSR000BIR.SP1.WA01 145 bp overlap

SP5 1 dataset

Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap

SRF 2 datasets

ChIP GM12878 ENCFF878IIX 277 bp overlap

ChIP GM12878 ENCSR041XML.SRF.GM12878 220 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap

TARDBP 2 datasets

ChIP GM12878 ENCFF866POT 471 bp overlap

ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 452 bp overlap

TBP 1 dataset

ChIP GM12878 ENCFF571OXR 385 bp overlap

TBX21 1 dataset

ChIP GM12878 ENCSR739IHN.TBX21.GM12878 268 bp overlap

TCF12 1 dataset

ChIP WA01 ENCSR000BIT.TCF12.WA01 109 bp overlap

TCF7L2 1 dataset

ChIP CD34_PROG_BIO GSE29194.TCF7L2.CD34_PROG_BIO 115 bp overlap

TP63 1 dataset

ChIP SUIT-2 GSE115461.TP63.SUIT-2 179 bp overlap

ZBTB18 1 dataset

Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap

ZBTB33 2 datasets

ChIP GM12878 ENCFF818EFA 331 bp overlap

ChIP GM12878 ENCSR542FLV.ZBTB33.GM12878 273 bp overlap

ZBTB42 1 dataset

ChIP HEK293 GSE76494.ZBTB42.HEK293 176 bp overlap

ZNF136 1 dataset

Motif DE_12h DE_12h-ZNF136_MA1588.1 15 bp overlap

ZNF140 1 dataset

Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap

ZNF143 1 dataset

ChIP GM12878 ENCSR936XTK.ZNF143.GM12878 239 bp overlap

ZNF148 1 dataset

Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap

ZNF213 1 dataset

Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap

ZNF274 2 datasets

Motif DE_12h DE_12h-ZNF274_MA1592.2 12 bp overlap

ChIP WA01 ENCSR000EUN.ZNF274.WA01 202 bp overlap

ZNF341 1 dataset

ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 231 bp overlap

ZNF530 1 dataset

Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap

ZNF816 1 dataset

Motif DE_12h DE_12h-ZNF816_MA1719.2 15 bp overlap

ZNF93 1 dataset

Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap