chr1 : 156,073,800 156,074,094
294 bp 76 TFs 2 linked genes
This 294 bp open chromatin element is linked to MEX3A and LMNA and is bound by 76 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
MEX3A 7.6 kb Proximal Proximity
LMNA 8.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:156,068,800 – 156,079,094
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
76 transcription factors
Source
Cell type
AR 2 datasets
ChIP breast_tumor_Male_20 GSE104399.AR.breast_tumor_Male_20 221 bp overlap
ChIP breast_tumor_Male_26 GSE104399.AR.breast_tumor_Male_26 202 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 232 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 244 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 234 bp overlap
ATF2 2 datasets
ChIP WA01 ENCSR000BQU.ATF2.WA01 155 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 93 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 227 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 196 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 213 bp overlap
BRD4 6 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 286 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 294 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 294 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 294 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 294 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 226 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 294 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 216 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 266 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 215 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 294 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 286 bp overlap
EP300 2 datasets
ChIP WA01 ENCSR000BKK.EP300.WA01 186 bp overlap
ChIP WA01 ENCSR000AUQ.EP300.WA01 139 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 294 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 192 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 227 bp overlap
FOXA1 1 dataset
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 137 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 259 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 177 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 294 bp overlap
HDAC2 3 datasets
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 199 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 168 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 157 bp overlap
HNRNPK 1 dataset
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 178 bp overlap
IFNA1 1 dataset
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 244 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 294 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 220 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 170 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 294 bp overlap
KLF5 1 dataset
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 163 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 129 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 233 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 161 bp overlap
MAZ 3 datasets
ChIP HEK293 ENCFF994GSG 294 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 294 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 219 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 294 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 294 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 247 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 132 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 181 bp overlap
NELFE 1 dataset
ChIP K-562_HS GSE112379.NELFE.K-562_HS 175 bp overlap
NEUROD1 2 datasets
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 159 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 154 bp overlap
NIPBL 3 datasets
ChIP hESC GSE64758.NIPBL.hESC 251 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 280 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 236 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 234 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 245 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 294 bp overlap
POLR2A 1 dataset
ChIP GM23338 ENCFF450WCS 294 bp overlap
POU5F1 3 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 294 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 173 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 254 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 294 bp overlap
RAD21 1 dataset
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 146 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 277 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF042ZSL 294 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 202 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 157 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 173 bp overlap
SIX1 1 dataset
ChIP Hep-G2 ENCSR561BQM.SIX1.Hep-G2 162 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 217 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 139 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 232 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 147 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 238 bp overlap
SMARCA4 3 datasets
ChIP NSC GSE125033.SMARCA4.NSC 294 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 284 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 288 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 283 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 294 bp overlap
SMARCC1 4 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 265 bp overlap
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 97 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 293 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 294 bp overlap
SMARCE1 1 dataset
ChIP HMLE-Twist-ER_125nM_4OHT GSE96933.SMARCE1.HMLE-Twist-ER_125nM_4OHT 70 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 252 bp overlap
SOX2 4 datasets
ChIP H9 GSE46837.SOX2.H9 212 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 277 bp overlap
ChIP hESC GSE69479.SOX2.hESC 217 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 268 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 224 bp overlap
SOX4 1 dataset
ChIP MRC-5_1DPT GSE75910.SOX4.MRC-5_1DPT 152 bp overlap
SP1 5 datasets
ChIP H1 ENCFF263FUH 293 bp overlap
ChIP HEK293T ERP007114.SP1.HEK293T 185 bp overlap
ChIP Hep-G2 ENCSR460YAM.SP1.Hep-G2 98 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 294 bp overlap
ChIP WTC11 ENCFF688PEU 294 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 157 bp overlap
TBP 1 dataset
ChIP WA01 ENCSR000ECB.TBP.WA01 193 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 201 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 294 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 242 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 259 bp overlap
ZBTB7A 2 datasets
ChIP Ishikawa ENCSR000BSZ.ZBTB7A.Ishikawa 180 bp overlap
ChIP K-562 GSE103445.ZBTB7A.K-562 234 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 157 bp overlap
ZNF148 1 dataset
ChIP K-562 GSE121133.ZNF148.K-562 268 bp overlap
ZNF263 1 dataset
ChIP HEK293T GSE78099.ZNF263.HEK293T 232 bp overlap
ZNF281 2 datasets
ChIP K-562 GSE121133.ZNF281.K-562 147 bp overlap
ChIP WTC11 ENCFF551GAV 294 bp overlap
ZNF398 3 datasets
ChIP BG01V GSE133630.ZNF398.BG01V 206 bp overlap
ChIP H9 GSE133630.ZNF398.H9 203 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 242 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 276 bp overlap
ZNF512 3 datasets
ChIP K-562 ENCSR591CCL.ZNF512.K-562 158 bp overlap
ChIP K562 ENCFF601EMZ 294 bp overlap
ChIP K562 ENCFF601EMZ 294 bp overlap
ZNF671 1 dataset
ChIP HEK293T GSE78099.ZNF671.HEK293T 201 bp overlap