chr6 : 40,790,904 40,791,637
733 bp 134 TFs 2 linked genes
This 733 bp open chromatin element is linked to OARD1 and NFYA and is bound by 134 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
OARD1 281.3 kb Distal Multiome
NFYA 281.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:40,785,904 – 40,796,637
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
134 transcription factors
Source
Cell type
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 296 bp overlap
ARNTL 1 dataset
ChIP U2OS_trough_DMOG GSE85096.ARNTL.U2OS_trough_DMOG 240 bp overlap
ATF3 1 dataset
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 247 bp overlap
ATOH7 1 dataset
Motif DE_24h DE_24h-ATOH7_MA1468.1 10 bp overlap
Ascl2 1 dataset
Motif DE_24h DE_24h-Ascl2_MA0816.1 10 bp overlap
Atf3 1 dataset
Motif DE_24h DE_24h-Atf3_MA1988.2 7 bp overlap
BACH1 2 datasets
Motif DE_24h DE_24h-BACH1_MA1633.2 9 bp overlap
ChIP SW1990 GSE124406.BACH1.SW1990 230 bp overlap
BACH2 1 dataset
Motif DE_24h DE_24h-BACH2_MA1101.3 11 bp overlap
BATF 1 dataset
Motif DE_24h DE_24h-BATF_MA1634.2 7 bp overlap
BATF3 1 dataset
Motif DE_24h DE_24h-BATF3_MA0835.3 7 bp overlap
BNC2 1 dataset
Motif DE_24h DE_24h-BNC2_MA1928.2 7 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 104 bp overlap
CREBBP 3 datasets
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 596 bp overlap
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 135 bp overlap
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 270 bp overlap
CRY1 1 dataset
ChIP U2OS_cordycepin GSE130506.CRY1.U2OS_cordycepin 293 bp overlap
CTCF 33 datasets
ChIP A-549 ENCSR000DPF.CTCF.A-549 173 bp overlap
ChIP AG10803 ENCFF549AQK 257 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 185 bp overlap
Motif DE_24h DE_24h-CTCF_MA1930.2 33 bp overlap
ChIP H54 ENCFF255TVO 225 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 253 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 170 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 287 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 231 bp overlap
ChIP Loucy ENCFF359TVQ 267 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 163 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF424NQR 191 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7_HYPOXIA GSE78113.CTCF.MCF-7_HYPOXIA 209 bp overlap
ChIP MCF-7_NORMOXIA GSE78113.CTCF.MCF-7_NORMOXIA 269 bp overlap
ChIP MDA-MB-435_Asynchronous GSE102019.CTCF.MDA-MB-435_Asynchronous 208 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 231 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 184 bp overlap
ChIP endodermal cell ENCFF471YCZ 347 bp overlap
ChIP esophagus squamous epithelium ENCFF037IYT 344 bp overlap
ChIP esophagus_squamous-epithelium ENCSR838RUX.CTCF.esophagus_squamous-epithelium 257 bp overlap
ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 298 bp overlap
ChIP fibroblast_SKIN_ABDOMEN ENCSR000DPV.CTCF.fibroblast_SKIN_ABDOMEN 107 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 358 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 170 bp overlap
ChIP hiPSC_IID12 GSE106870.CTCF.hiPSC_IID12 145 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 178 bp overlap
ChIP myotube ENCFF981UHL 328 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 170 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 239 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 284 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 275 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 480 bp overlap
ESR1 6 datasets
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 103 bp overlap
ChIP MCF-7_E2-40min-ERalpha GSE94023.ESR1.MCF-7_E2-40min-ERalpha 175 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 147 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 265 bp overlap
ChIP MCF-7_parental GSE123284.ESR1.MCF-7_parental 184 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 261 bp overlap
ESR1_Y537N 2 datasets
ChIP MCF-7_dox GSE94493.ESR1_Y537N.MCF-7_dox 277 bp overlap
ChIP MCF-7_dox_E2 GSE94493.ESR1_Y537N.MCF-7_dox_E2 246 bp overlap
ESR1_Y537S 2 datasets
ChIP MCF-7_E2 GSE94493.ESR1_Y537S.MCF-7_E2 283 bp overlap
ChIP MCF-7_dox GSE94493.ESR1_Y537S.MCF-7_dox 347 bp overlap
ETS1 1 dataset
ChIP SCC-25 GSE109884.ETS1.SCC-25 447 bp overlap
EZH2 2 datasets
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 181 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 731 bp overlap
Esrrg 1 dataset
Motif DE_24h DE_24h-Esrrg_MA0643.2 9 bp overlap
FERD3L 1 dataset
Motif DE_24h DE_24h-FERD3L_MA1485.1 14 bp overlap
FEZF2 2 datasets
Motif DE_24h DE_24h-FEZF2_MA2341.1 8 bp overlap
Motif DE_24h DE_24h-FEZF2_MA2341.1 8 bp overlap
FLI1 2 datasets
ChIP A-673_D11 GSE129155.FLI1.A-673_D11 235 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 209 bp overlap
FOS 1 dataset
Motif DE_24h DE_24h-FOS_MA0476.2 8 bp overlap
FOSL1 1 dataset
Motif DE_24h DE_24h-FOSL1_MA0477.3 9 bp overlap
FOSL2 1 dataset
Motif DE_24h DE_24h-FOSL2_MA0478.2 10 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 461 bp overlap
GATA1 1 dataset
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 114 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC9ebs GSE107639.GATA2.hiPSC_SLC9ebs 251 bp overlap
GATA4 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 175 bp overlap
ChIP DE DE-GATA4-1 616 bp overlap
ChIP DE DE-GATA4-2 665 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 668 bp overlap
ChIP DE DE-GATA6-2 601 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 728 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 716 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 683 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 733 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 733 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 733 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 581 bp overlap
GRHL2 3 datasets
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 200 bp overlap
ChIP PEO1 GSE71018.GRHL2.PEO1 125 bp overlap
ChIP PEO1 GSE71018.GRHL2.PEO1 343 bp overlap
HAND2 1 dataset
Motif DE_24h DE_24h-HAND2_MA1638.2 6 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 174 bp overlap
HIF1A 3 datasets
ChIP PC-3_hypoxia_siCtrl GSE106305.HIF1A.PC-3_hypoxia_siCtrl 220 bp overlap
ChIP U2OS_DMSO GSE85096.HIF1A.U2OS_DMSO 405 bp overlap
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 315 bp overlap
Hnf1A 1 dataset
Motif DE_24h DE_24h-Hnf1A_MA1991.2 10 bp overlap
IKZF1 2 datasets
ChIP BCR-ABL1_LAX2 GSE58825.IKZF1.BCR-ABL1_LAX2 229 bp overlap
Motif DE_24h DE_24h-IKZF1_MA1508.2 8 bp overlap
IKZF2 1 dataset
Motif DE_24h DE_24h-IKZF2_MA2326.1 6 bp overlap
JUN 8 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 683 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 456 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 646 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 690 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 386 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 676 bp overlap
ChIP MCF-7_abemaciclib GSE157385.JUN.MCF-7_abemaciclib 277 bp overlap
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 188 bp overlap
JUNB 1 dataset
Motif DE_24h DE_24h-JUNB_MA0490.3 9 bp overlap
JUND 1 dataset
Motif DE_24h DE_24h-JUND_MA0491.3 9 bp overlap
Jun 1 dataset
Motif DE_24h DE_24h-Jun_MA0489.3 8 bp overlap
KDM1A 1 dataset
ChIP keratinocyte_diff GSE57702.KDM1A.keratinocyte_diff 205 bp overlap
KLF16 1 dataset
Motif DE_24h DE_24h-KLF16_MA0741.1 11 bp overlap
KLF17 1 dataset
Motif DE_24h DE_24h-KLF17_MA1514.2 14 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 597 bp overlap
KLF4 3 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 263 bp overlap
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 126 bp overlap
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 286 bp overlap
KLF5 3 datasets
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
ChIP GP5D GSE51234.KLF5.GP5D 331 bp overlap
ChIP HCC95_E419Q GSE88976.KLF5.HCC95_E419Q 193 bp overlap
KLF9 1 dataset
Motif DE_24h DE_24h-KLF9_MA1107.3 11 bp overlap
Lef1 1 dataset
Motif DE_24h DE_24h-Lef1_MA0768.3 8 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 340 bp overlap
MAFK 1 dataset
Motif DE_24h DE_24h-MAFK_MA0496.4 10 bp overlap
MGA 1 dataset
Motif DE_24h DE_24h-MGA_MA0801.1 8 bp overlap
Mafg 1 dataset
Motif DE_24h DE_24h-Mafg_MA0659.4 12 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 733 bp overlap
NEUROG2 1 dataset
Motif DE_24h DE_24h-NEUROG2_MA0669.1 10 bp overlap
NFE2 1 dataset
ChIP K-562 ENCSR000FCC.NFE2.K-562 132 bp overlap
NIPBL 2 datasets
ChIP HCT-116_RAD21-mAC GSE104888.NIPBL.HCT-116_RAD21-mAC 206 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.NIPBL.HCT-116_RAD21-mAC_500uM_auxin 479 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 177 bp overlap
Nfat5 1 dataset
Motif DE_24h DE_24h-Nfat5_MA0606.3 8 bp overlap
Nfatc2 1 dataset
Motif DE_24h DE_24h-Nfatc2_MA0152.3 8 bp overlap
Nfe2l2 1 dataset
Motif DE_24h DE_24h-Nfe2l2_MA0150.3 11 bp overlap
OLIG1 1 dataset
Motif DE_24h DE_24h-OLIG1_MA0826.1 10 bp overlap
PBX3 1 dataset
Motif DE_24h DE_24h-PBX3_MA1114.2 11 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 191 bp overlap
PKNOX1 2 datasets
Motif DE_24h DE_24h-PKNOX1_MA0782.3 10 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 221 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 421 bp overlap
PRDM9 1 dataset
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
Plagl1 1 dataset
Motif DE_24h DE_24h-Plagl1_MA1615.2 8 bp overlap
Prdm15 1 dataset
Motif DE_24h DE_24h-Prdm15_MA1616.2 11 bp overlap
Ptf1A 1 dataset
Motif DE_24h DE_24h-Ptf1A_MA1618.2 9 bp overlap
RBPJ 1 dataset
Motif DE_24h DE_24h-RBPJ_MA1116.2 6 bp overlap
SCRT1 1 dataset
Motif DE_24h DE_24h-SCRT1_MA0743.3 10 bp overlap
SCRT2 1 dataset
Motif DE_24h DE_24h-SCRT2_MA0744.3 10 bp overlap
SIX1 1 dataset
Motif DE_24h DE_24h-SIX1_MA1118.2 9 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 727 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 733 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 733 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 656 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 721 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 733 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 712 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 714 bp overlap
SMAD3 3 datasets
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 140 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 143 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 250 bp overlap
SMARCA4 9 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 156 bp overlap
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 59 bp overlap
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 59 bp overlap
ChIP A-549_AG15721 GSE132290.SMARCA4.A-549_AG15721 144 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 53 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 341 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 520 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 328 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 251 bp overlap
SMARCC1 5 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 259 bp overlap
ChIP DE_D1 S10-DE-d1-BAF155-exp1 489 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 533 bp overlap
ChIP TTC-1240 GSE124903.SMARCC1.TTC-1240 483 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 160 bp overlap
SMC1 1 dataset
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.SMC1.HCT-116_RAD21-mAC_500uM_auxin 286 bp overlap
SMC1A 2 datasets
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 264 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d6 237 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 436 bp overlap
SP3 1 dataset
Motif DE_24h DE_24h-SP3_MA0746.3 11 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 394 bp overlap
Six4 1 dataset
Motif DE_24h DE_24h-Six4_MA2001.2 7 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 381 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 511 bp overlap
TBX1 1 dataset
Motif DE_24h DE_24h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_24h DE_24h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_24h DE_24h-TBX18_MA1565.2 9 bp overlap
TBX20 1 dataset
Motif DE_24h DE_24h-TBX20_MA0689.1 11 bp overlap
TBX5 1 dataset
Motif DE_24h DE_24h-TBX5_MA0807.1 8 bp overlap
TCF7L2 5 datasets
Motif DE_24h DE_24h-TCF7L2_MA0523.2 9 bp overlap
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 512 bp overlap
ChIP HCT-116_sc2 GSE127960.TCF7L2.HCT-116_sc2 215 bp overlap
ChIP HCT116 ENCFF038POZ 371 bp overlap
ChIP LNCaP GSE51621.TCF7L2.LNCaP 256 bp overlap
TEAD1 1 dataset
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 199 bp overlap
TEAD4 1 dataset
ChIP SNU-216 GSE44416.TEAD4.SNU-216 426 bp overlap
TFAP4 1 dataset
ChIP DLD-1 GSE46935.TFAP4.DLD-1 410 bp overlap
THAP1 1 dataset
Motif DE_24h DE_24h-THAP1_MA0597.3 8 bp overlap
TP53 3 datasets
ChIP GM06170 GSE55727.TP53.GM06170 299 bp overlap
ChIP MCF-7_nutlin GSE86164.TP53.MCF-7_nutlin 301 bp overlap
ChIP keratinocyte_CISP GSE56674.TP53.keratinocyte_CISP 205 bp overlap
TP63 4 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 169 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 443 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 215 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 267 bp overlap
Tbx6 1 dataset
Motif DE_24h DE_24h-Tbx6_MA1567.3 9 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 308 bp overlap
ZNF213 1 dataset
Motif DE_24h DE_24h-ZNF213_MA2121.1 12 bp overlap
ZNF317 1 dataset
Motif DE_24h DE_24h-ZNF317_MA1593.2 8 bp overlap
ZNF354A 1 dataset
Motif DE_24h DE_24h-ZNF354A_MA1978.2 20 bp overlap
ZNF574 1 dataset
Motif DE_24h DE_24h-ZNF574_MA1982.2 14 bp overlap
ZNF701 1 dataset
Motif DE_24h DE_24h-ZNF701_MA1987.2 17 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 268 bp overlap
Zfp809 2 datasets
Motif DE_24h DE_24h-Zfp809_MA2125.1 9 bp overlap
Motif DE_24h DE_24h-Zfp809_MA2125.1 9 bp overlap