chr5 : 140,986,233 140,986,561
328 bp 73 TFs 0 linked genes
This 328 bp open chromatin element has no linked target genes and is bound by 73 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:140,981,233 – 140,991,561
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
73 transcription factors
Source
Cell type
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 94 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 328 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 328 bp overlap
BCL11A 2 datasets
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 191 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 133 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 301 bp overlap
BNC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 242 bp overlap
BRD4 1 dataset
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 96 bp overlap
CASZ1 2 datasets
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 316 bp overlap
ChIP rhabdomyosarcoma_Trametinib GSE126143.CASZ1.rhabdomyosarcoma_Trametinib 255 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 118 bp overlap
CHD2 1 dataset
ChIP WA01 ENCSR000EBT.CHD2.WA01 120 bp overlap
CHD7 4 datasets
ChIP H1 ENCFF126NLU 328 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 248 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 232 bp overlap
ChIP hiPSC_derived_neural-crest-cell GSE108506.CHD7.hiPSC_derived_neural-crest-cell 208 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 113 bp overlap
CREB5 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 217 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 310 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 245 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 299 bp overlap
ESR1 1 dataset
ChIP T-47D_DMSO GSE148277.ESR1.T-47D_DMSO 231 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 237 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 328 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 181 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 155 bp overlap
FOSL2 1 dataset
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 306 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 188 bp overlap
ChIP DE DE-FOXA2-2 108 bp overlap
ChIP DE DE-FOXA2-2 126 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 140 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 328 bp overlap
ChIP DE DE-GATA4-2 328 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 328 bp overlap
ChIP DE DE-GATA6-2 328 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 79 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 120 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 112 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000BNR.HDAC2.WA01 170 bp overlap
ISL1 1 dataset
ChIP SK-N-SH ENCFF285GEQ 328 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 248 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 208 bp overlap
JUNB 2 datasets
ChIP GM23338 ENCFF224LRO 312 bp overlap
ChIP hESC ENCSR917MAH.JUNB.hESC 202 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 94 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 160 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 328 bp overlap
MORC2 1 dataset
ChIP HeLa_V5-MORC2-KO GSE95451.MORC2.HeLa_V5-MORC2-KO 148 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 234 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 234 bp overlap
MYOD1 2 datasets
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 328 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 328 bp overlap
NANOG 7 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 113 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 328 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 328 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 243 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 328 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 328 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 328 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 260 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 118 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 66 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 130 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 117 bp overlap
NKX2-1 1 dataset
ChIP NCI-H1819 GSE39998.NKX2-1.NCI-H1819 255 bp overlap
PATZ1 1 dataset
ChIP SK-N-SH ENCFF650NCN 251 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 190 bp overlap
POU5F1 7 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 328 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 328 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 141 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 117 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 328 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 235 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 186 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 315 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 328 bp overlap
RBBP5 3 datasets
ChIP H1 ENCFF905HFL 328 bp overlap
ChIP H1 ENCFF905HFL 328 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 328 bp overlap
RELA 1 dataset
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 140 bp overlap
REST 1 dataset
ChIP WA01 ENCSR000BHM.REST.WA01 238 bp overlap
RXRA 1 dataset
ChIP WA01 ENCSR000BJW.RXRA.WA01 221 bp overlap
SIN3A 2 datasets
ChIP H1 ENCFF042ZSL 328 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 147 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 328 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 142 bp overlap
SMARCA2 5 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 223 bp overlap
ChIP NPC_K755R-pos_ab GSE122631.SMARCA2.NPC_K755R-pos_ab 225 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 296 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 262 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 139 bp overlap
SMARCA4 6 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 267 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 328 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 138 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 285 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 328 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 328 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 328 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 146 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 328 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 328 bp overlap
SNAI2 3 datasets
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 328 bp overlap
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 156 bp overlap
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 213 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 275 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 328 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 92 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 328 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 173 bp overlap
STAG2 1 dataset
ChIP HMEC-1 GSE101921.STAG2.HMEC-1 177 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 278 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 328 bp overlap
TAF7 1 dataset
ChIP WA01 ENCSR000BLU.TAF7.WA01 138 bp overlap
TBP 7 datasets
ChIP WA01 ENCSR000ECB.TBP.WA01 167 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 125 bp overlap
ChIP hESC GSE122298.TBP.hESC 169 bp overlap
ChIP hESC GSE122298.TBP.hESC 105 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 174 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 328 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 191 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 303 bp overlap
TEAD1 1 dataset
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 132 bp overlap
TEAD4 4 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 328 bp overlap
ChIP H1 ENCFF778PAX 117 bp overlap
ChIP T-47D_Veh GSE125594.TEAD4.T-47D_Veh 212 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 256 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 328 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 297 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 249 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 328 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 302 bp overlap
YY1 2 datasets
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 157 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 328 bp overlap