chr5 : 135,027,489 – 135,027,710
221 bp 81 TFs 3 linked genes
This 221 bp open chromatin element is linked to PITX1, PITX1-AS1, and ENSG00000277619 and is bound by 81 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PITX1 5.4 kb Proximal Proximity
PITX1-AS1 5.7 kb Proximal Proximity
ENSG00000277619 6.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:135,022,489 – 135,032,710
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
81 transcription factors
Source
Cell type
AGO1 4 datasets
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 140 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 118 bp overlap
ChIP K-562 ENCSR641BSL.AGO1.K-562 202 bp overlap
ChIP K-562 GSE120104.AGO1.K-562 194 bp overlap
AGO2 2 datasets
ChIP HepG2 ENCFF252VFI 221 bp overlap
ChIP HepG2 ENCFF773YDL 221 bp overlap
AR 2 datasets
ChIP breast-cancer_Veh-2858 GSE128018.AR.breast-cancer_Veh-2858 103 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 221 bp overlap
ARID4B 1 dataset
ChIP PC-3 GSE116669.ARID4B.PC-3 221 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 221 bp overlap
ATF3 2 datasets
ChIP K-562 ENCSR028UIU.ATF3.K-562 100 bp overlap
ChIP K562 ENCFF604FPV 195 bp overlap
BCL6 1 dataset
ChIP CD4 GSE59933.BCL6.CD4 141 bp overlap
BCOR 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 134 bp overlap
BRD4 4 datasets
ChIP CLL_patient3_4h_CpG_BET GSE109411.BRD4.CLL_patient3_4h_CpG_BET 221 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 89 bp overlap
ChIP MV4-11_DMSO GSE120715.BRD4.MV4-11_DMSO 187 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 75 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 146 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 176 bp overlap
CBX7 1 dataset
ChIP hESC_TKO GSE133412.CBX7.hESC_TKO 123 bp overlap
CEBPD 1 dataset
ChIP Hep-G2 ENCSR000BQJ.CEBPD.Hep-G2 115 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 221 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 61 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 154 bp overlap
CTCF 1 dataset
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 85 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 149 bp overlap
DNMT1 1 dataset
ChIP HepG2 ENCFF153HEB 211 bp overlap
EGR1 1 dataset
ChIP A-375 GSE116190.EGR1.A-375 221 bp overlap
ESR1_pS118 1 dataset
ChIP MCF-7_E2_sc GSE117569.ESR1_pS118.MCF-7_E2_sc 221 bp overlap
EZH1 2 datasets
ChIP ProEs GSE59087.EZH1.ProEs 85 bp overlap
ChIP ProEs_SHCTR GSE59087.EZH1.ProEs_SHCTR 75 bp overlap
EZH2 14 datasets
ChIP GM23248 ENCFF404ZHM 221 bp overlap
ChIP GM23248 ENCFF404ZHM 133 bp overlap
ChIP GM23338 ENCFF613YON 221 bp overlap
ChIP GM23338 ENCFF886DXX 207 bp overlap
ChIP GM23338 ENCFF886DXX 57 bp overlap
ChIP H1 ENCFF232NZA 221 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 135 bp overlap
ChIP astrocyte ENCFF365JTP 221 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 221 bp overlap
ChIP fibroblast of lung ENCFF479BAW 60 bp overlap
ChIP hepatocyte ENCFF552DZB 221 bp overlap
ChIP keratinocyte ENCFF070STK 68 bp overlap
ChIP neural progenitor cell ENCFF018MKA 221 bp overlap
ChIP neural progenitor cell ENCFF472NFV 221 bp overlap
EZH2_phosphoT487 1 dataset
ChIP GM23338 ENCSR591DTH.EZH2_phosphoT487.GM23338 221 bp overlap
FIP1L1 4 datasets
ChIP Hep-G2 ENCSR313VZG.FIP1L1.Hep-G2 162 bp overlap
ChIP K-562 GSE120104.FIP1L1.K-562 135 bp overlap
ChIP K-562 ENCSR177DNR.FIP1L1.K-562 154 bp overlap
ChIP K562 ENCFF002WKI 221 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 139 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 173 bp overlap
GTF2F1 1 dataset
ChIP K-562 GSE120104.GTF2F1.K-562 68 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR563YDA.HDGF.K-562 133 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 182 bp overlap
HIVEP1 1 dataset
ChIP Hep-G2 ENCSR697WMX.HIVEP1.Hep-G2 221 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 89 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 221 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 221 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 110 bp overlap
MBD2 1 dataset
ChIP HeLa GSE41006.MBD2.HeLa 80 bp overlap
MLLT1 1 dataset
ChIP K-562 ENCSR107GRP.MLLT1.K-562 221 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 221 bp overlap
MYNN 1 dataset
ChIP K-562 ENCSR737LTZ.MYNN.K-562 84 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 62 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 109 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_Bethyl275_OIS GSE118494.NCAPH2.IMR-90_Bethyl275_OIS 216 bp overlap
NFKB1 2 datasets
ChIP HEK293T GSE129618.NFKB1.HEK293T 166 bp overlap
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 182 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 218 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 221 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 221 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 221 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 185 bp overlap
POLR2A 2 datasets
ChIP K562 ENCFF262YXJ 132 bp overlap
ChIP gastroesophageal sphincter ENCFF070PCA 206 bp overlap
POLR2G 2 datasets
ChIP K562 ENCFF047BLG 221 bp overlap
ChIP K562 ENCFF648YPL 221 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 221 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 221 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 221 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 199 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 221 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 167 bp overlap
PRPF4 3 datasets
ChIP K-562 ENCSR220YXI.PRPF4.K-562 92 bp overlap
ChIP K-562 GSE120104.PRPF4.K-562 113 bp overlap
ChIP K562 ENCFF202AJJ 221 bp overlap
PTBP1 1 dataset
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 53 bp overlap
RBFOX2 4 datasets
ChIP HepG2 ENCFF554DMZ 221 bp overlap
ChIP HepG2 ENCFF939HTZ 221 bp overlap
ChIP K562 ENCFF196WTG 221 bp overlap
ChIP K562 ENCFF967GRF 221 bp overlap
RBM22 3 datasets
ChIP K562 ENCFF420JDS 221 bp overlap
ChIP K562 ENCFF629OUL 221 bp overlap
ChIP K562 ENCFF629OUL 175 bp overlap
RBM39 2 datasets
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 151 bp overlap
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 151 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 157 bp overlap
RNF2 2 datasets
ChIP H1 ENCFF239FFS 221 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 159 bp overlap
RPA2_phospho 1 dataset
ChIP HeLa GSE108172.RPA2_phospho.HeLa 175 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 173 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 219 bp overlap
SMAD2_3 1 dataset
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 221 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 221 bp overlap
SPI1 1 dataset
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 101 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 214 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 123 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 146 bp overlap
SUPT5H 5 datasets
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 174 bp overlap
ChIP HEK293_PNUTS GSE134198.SUPT5H.HEK293_PNUTS 162 bp overlap
ChIP K562 ENCFF902PAW 221 bp overlap
ChIP K562 ENCFF902PAW 212 bp overlap
ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 116 bp overlap
SUZ12 5 datasets
ChIP H1 ENCFF507HGF 204 bp overlap
ChIP H1 ENCFF881NFR 221 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.SUZ12.HEK293T_PCGF2fl 117 bp overlap
ChIP NT2/D1 ENCFF574SXS 221 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 221 bp overlap
TAF15 1 dataset
ChIP K-562 ENCSR047LSJ.TAF15.K-562 94 bp overlap
TAL1 1 dataset
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 84 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 201 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 221 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 221 bp overlap
TFDP1 1 dataset
ChIP K-562 ENCSR224IKA.TFDP1.K-562 91 bp overlap
TP63 2 datasets
ChIP breast-organoid GSE113909.TP63.breast-organoid 121 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 110 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 112 bp overlap
ZBTB33 2 datasets
ChIP K562 ENCFF427SDV 147 bp overlap
ChIP K562 ENCFF875HLX 221 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 221 bp overlap
ZKSCAN1 1 dataset
ChIP K-562 ENCSR882ERE.ZKSCAN1.K-562 171 bp overlap
ZMYND11 2 datasets
ChIP HeLa GSE51672.ZMYND11.HeLa 114 bp overlap
ChIP HeLa GSE51672.ZMYND11.HeLa 58 bp overlap
ZNF202 1 dataset
ChIP HEK293 ENCSR996FYT.ZNF202.HEK293 161 bp overlap
ZNF263 1 dataset
ChIP K-562 ENCSR000EWN.ZNF263.K-562 152 bp overlap
ZNF407 1 dataset
ChIP Hep-G2 ENCSR005WGY.ZNF407.Hep-G2 91 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 124 bp overlap
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