chr5 : 131,640,636 – 131,641,065
429 bp 79 TFs 1 linked gene
This 429 bp open chromatin element is linked to RAPGEF6 and is bound by 79 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RAPGEF6 5.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:131,635,636 – 131,646,065
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
79 transcription factors
Source
Cell type
AR 4 datasets
ChIP LNCaP GSE110655.AR.LNCaP 199 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 135 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 267 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 301 bp overlap
ARID1B 1 dataset
ChIP K-562 ENCSR822CCM.ARID1B.K-562 242 bp overlap
ARID3A 1 dataset
ChIP K-562 ENCSR000EFY.ARID3A.K-562 127 bp overlap
ATF1 1 dataset
ChIP K-562 ENCSR091GVJ.ATF1.K-562 185 bp overlap
ATF3 2 datasets
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 134 bp overlap
ChIP K-562 ENCSR028UIU.ATF3.K-562 287 bp overlap
ATF7 2 datasets
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 219 bp overlap
ChIP K-562 ENCSR972ZBV.ATF7.K-562 271 bp overlap
BRD4 1 dataset
ChIP CLL_patient1 GSE109411.BRD4.CLL_patient1 322 bp overlap
CBFA2T2 1 dataset
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 146 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 252 bp overlap
ChIP K-562 GSE142227.CBFA2T3.K-562 174 bp overlap
CBX3 1 dataset
ChIP HCT-116 ENCSR000BUH.CBX3.HCT-116 119 bp overlap
CDK7 2 datasets
ChIP Jurkat GSE83777.CDK7.Jurkat 127 bp overlap
ChIP Jurkat GSE50622.CDK7.Jurkat 267 bp overlap
CDK9 2 datasets
ChIP MOLT-4_DMSO GSE79288.CDK9.MOLT-4_DMSO 205 bp overlap
ChIP MOLT-4_JQ1 GSE79288.CDK9.MOLT-4_JQ1 250 bp overlap
CTCF 40 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 233 bp overlap
ChIP DOHH2 ENCFF637WNW 298 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 193 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 195 bp overlap
ChIP GM23338 ENCFF772DML 188 bp overlap
ChIP H9 ENCFF152GTF 329 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 273 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 267 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 181 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 310 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 373 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 248 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 271 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 292 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 363 bp overlap
ChIP HEC-1-B_RF-mutation GSE140868.CTCF.HEC-1-B_RF-mutation 149 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 154 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 150 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 212 bp overlap
ChIP HepG2 ENCFF348BUL 197 bp overlap
ChIP K-562 GSE70482.CTCF.K-562 143 bp overlap
ChIP K-562_13189 GSE131349.CTCF.K-562_13189 117 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 217 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 154 bp overlap
ChIP K-562_8005 GSE131349.CTCF.K-562_8005 141 bp overlap
ChIP Loucy ENCFF359TVQ 323 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 192 bp overlap
ChIP MCF-7 ENCFF494VXA 210 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 369 bp overlap
ChIP RWPE2 ENCFF911IEE 429 bp overlap
ChIP RWPE2 ENCFF911IEE 313 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 143 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 208 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 119 bp overlap
ChIP endodermal cell ENCFF471YCZ 148 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 400 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 251 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 178 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 156 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 323 bp overlap
DDX20 1 dataset
ChIP K562 ENCFF205RDN 64 bp overlap
DEAF1 1 dataset
ChIP K562 ENCFF944USZ 235 bp overlap
DMBX1 1 dataset
ChIP K562 ENCFF972HXB 148 bp overlap
DPF2 1 dataset
ChIP K-562 ENCSR219BXP.DPF2.K-562 197 bp overlap
EZH2 2 datasets
ChIP Jurkat GSE147198.EZH2.Jurkat 115 bp overlap
ChIP Jurkat_KO GSE147198.EZH2.Jurkat_KO 156 bp overlap
FOS 5 datasets
ChIP CD4 GSE116695.FOS.CD4 198 bp overlap
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 193 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 227 bp overlap
ChIP endothelial cell of umbilical vein ENCFF415XBG 286 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 254 bp overlap
FOSL1 5 datasets
ChIP HCT-116 ENCSR000BTE.FOSL1.HCT-116 168 bp overlap
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 269 bp overlap
ChIP K562 ENCFF455MKD 429 bp overlap
ChIP K562 ENCFF728OTE 231 bp overlap
ChIP MDA-MB-231 GSE95303.FOSL1.MDA-MB-231 162 bp overlap
FOSL2 2 datasets
ChIP LPS141 GSE111253.FOSL2.LPS141 164 bp overlap
ChIP SK-N-SH ENCSR000BVB.FOSL2.SK-N-SH 129 bp overlap
FOXA1 1 dataset
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 111 bp overlap
GATA1 2 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 84 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 220 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 141 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 53 bp overlap
GATA4 1 dataset
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 212 bp overlap
GFI1B 3 datasets
ChIP CD34 GSE52924.GFI1B.CD34 242 bp overlap
ChIP K-562 ENCSR509GDT.GFI1B.K-562 196 bp overlap
ChIP K-562_Wnt GSE117944.GFI1B.K-562_Wnt 284 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR387UWP.HDAC1.K-562 286 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 225 bp overlap
ChIP K-562 ENCSR000BMG.HDAC2.K-562 145 bp overlap
HMBOX1 2 datasets
ChIP K562 ENCFF055GAZ 235 bp overlap
ChIP K562 ENCFF317JJX 233 bp overlap
ILF3 1 dataset
ChIP K562 ENCFF730DTW 144 bp overlap
JUN 3 datasets
ChIP HAEC_IL1b_4h GSE89970.JUN.HAEC_IL1b_4h 168 bp overlap
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 200 bp overlap
ChIP K-562 ENCSR000FAH.JUN.K-562 122 bp overlap
JUNB 2 datasets
ChIP CD4 GSE116695.JUNB.CD4 269 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUNB.MCF10A-Er-Src_EtOH 123 bp overlap
JUND 1 dataset
ChIP K-562 ENCSR000EGN.JUND.K-562 136 bp overlap
KAT7 2 datasets
ChIP K562 ENCFF175ZTN 55 bp overlap
ChIP K562 ENCFF175ZTN 325 bp overlap
KDM1A 4 datasets
ChIP K-562 ENCSR908CMW.KDM1A.K-562 243 bp overlap
ChIP K-562 GSE117944.KDM1A.K-562 260 bp overlap
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 258 bp overlap
ChIP K562 ENCFF934ZRG 341 bp overlap
KMT2A 1 dataset
ChIP blood_cord GSE83671.KMT2A.blood_cord 226 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 250 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 74 bp overlap
MAZ 1 dataset
ChIP K562 ENCFF982GSZ 129 bp overlap
MYB 5 datasets
ChIP DU528 GSE94000.MYB.DU528 142 bp overlap
ChIP Jurkat GSE59657.MYB.Jurkat 150 bp overlap
ChIP Loucy GSE94000.MYB.Loucy 123 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 76 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 99 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 113 bp overlap
MYNN 1 dataset
ChIP K-562 ENCSR737LTZ.MYNN.K-562 115 bp overlap
NBN 1 dataset
ChIP K-562 ENCSR085QEV.NBN.K-562 175 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 305 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 225 bp overlap
NFATC3 1 dataset
ChIP K-562 ENCSR051OUX.NFATC3.K-562 90 bp overlap
NFE2 1 dataset
ChIP K-562 ENCSR000FCC.NFE2.K-562 123 bp overlap
NFKB1 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 115 bp overlap
NR2F1 1 dataset
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 205 bp overlap
NRF1 2 datasets
ChIP HMEC-1 GSE67867.NRF1.HMEC-1 189 bp overlap
ChIP K562 ENCFF689EWI 319 bp overlap
OTX2 1 dataset
ChIP retina_pigment GSE60024.OTX2.retina_pigment 215 bp overlap
POLR2A 1 dataset
ChIP K562 ENCFF215CWW 429 bp overlap
POLR2B 1 dataset
ChIP K562 ENCFF513ENO 115 bp overlap
POU5F1 1 dataset
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 155 bp overlap
RAD21 5 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 247 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 194 bp overlap
ChIP HepG2 ENCFF906QIS 225 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 98 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.RAD21.peripheral-blood-neutrophil_PMA-1 129 bp overlap
RBM22 2 datasets
ChIP K-562 GSE120104.RBM22.K-562 242 bp overlap
ChIP K-562 ENCSR848AOP.RBM22.K-562 242 bp overlap
RELA 17 datasets
ChIP CD4_Th1_DMSO GSE62482.RELA.CD4_Th1_DMSO 53 bp overlap
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 149 bp overlap
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 143 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 181 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 249 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 227 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 218 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 165 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 259 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 217 bp overlap
ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 249 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 240 bp overlap
ChIP aortic-endothelial-cell_IL1B_D41 GSE139377.RELA.aortic-endothelial-cell_IL1B_D41 236 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 208 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 149 bp overlap
ChIP aortic-endothelial-cell_IL1B_D8 GSE139377.RELA.aortic-endothelial-cell_IL1B_D8 89 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 177 bp overlap
REST 1 dataset
ChIP K-562 ENCSR137ZMQ.REST.K-562 180 bp overlap
RUNX1 4 datasets
ChIP Jurkat GSE68976.RUNX1.Jurkat 235 bp overlap
ChIP Jurkat GSE76181.RUNX1.Jurkat 123 bp overlap
ChIP ME-1 GSE117138.RUNX1.ME-1 77 bp overlap
ChIP ME-1_KD GSE128771.RUNX1.ME-1_KD 77 bp overlap
SMAD2-3 1 dataset
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 131 bp overlap
SMAD4 1 dataset
ChIP K562 ENCFF628RBP 125 bp overlap
SMARCA4 8 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 84 bp overlap
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 102 bp overlap
ChIP A-549_AG15721 GSE132290.SMARCA4.A-549_AG15721 84 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 141 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 72 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 206 bp overlap
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 161 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 358 bp overlap
SMARCE1 1 dataset
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 239 bp overlap
SMC3 1 dataset
ChIP peripheral-blood-neutrophil_Ecoli-1 GSE126755.SMC3.peripheral-blood-neutrophil_Ecoli-1 189 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 356 bp overlap
ChIP K562 ENCFF059YCJ 264 bp overlap
STAG1 2 datasets
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 150 bp overlap
ChIP HepG2 ENCFF843EBZ 250 bp overlap
STAT3 2 datasets
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 183 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 200 bp overlap
SUPT5H 1 dataset
ChIP MOLT-4_SNS GSE89384.SUPT5H.MOLT-4_SNS 207 bp overlap
TAL1 2 datasets
ChIP K-562 GSE107726.TAL1.K-562 136 bp overlap
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 67 bp overlap
TCF12 1 dataset
ChIP K-562 ENCSR189TRZ.TCF12.K-562 72 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 167 bp overlap
ZBTB17 2 datasets
ChIP HEK293 ENCFF865LIO 429 bp overlap
ChIP K562 ENCFF731UTU 59 bp overlap
ZBTB33 6 datasets
ChIP HepG2 ENCFF778UKV 167 bp overlap
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 334 bp overlap
ChIP K562 ENCFF427SDV 362 bp overlap
ChIP K562 ENCFF875HLX 210 bp overlap
ChIP MCF-7 ENCFF622BUU 226 bp overlap
ChIP MCF-7 ENCSR231YFE.ZBTB33.MCF-7 251 bp overlap
ZBTB7A 2 datasets
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 222 bp overlap
ChIP K-562 GSE103445.ZBTB7A.K-562 115 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR004GKA.ZEB2.K-562 296 bp overlap
ZMIZ1 1 dataset
ChIP THP-6_shCtrl GSE138516.ZMIZ1.THP-6_shCtrl 61 bp overlap
ZNF283 1 dataset
ChIP HEK293T GSE78099.ZNF283.HEK293T 198 bp overlap
ZNF394 2 datasets
ChIP HEK293 ENCFF236OPX 213 bp overlap
ChIP HEK293 ENCSR125DNC.ZNF394.HEK293 274 bp overlap
ZNF740 1 dataset
ChIP K562 ENCFF505NFV 237 bp overlap
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