chr5 : 88,256,872 88,257,263
391 bp 106 TFs 0 linked genes
This 391 bp open chromatin element has no linked target genes and is bound by 106 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:88,251,872 – 88,262,263
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
106 transcription factors
Source
Cell type
AR 4 datasets
ChIP LNCaP-clone-FGC_DHT-ABBV-744 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-744 104 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 194 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 86 bp overlap
ChIP prostate-cancer GSE136128.AR.prostate-cancer 139 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 286 bp overlap
ARNT::HIF1A 2 datasets
Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap
Motif ES_0h ES_0h-ARNTHIF1A_MA0259.2 5 bp overlap
ASCL1 2 datasets
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
Motif ES_0h ES_0h-ASCL1_MA1631.2 9 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 391 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 391 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 237 bp overlap
BRD4 4 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 220 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 391 bp overlap
ChIP LNCaP-C4-2_F133V_JQ1 GSE88871.BRD4.LNCaP-C4-2_F133V_JQ1 65 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 390 bp overlap
CHD1 1 dataset
ChIP H1 ENCFF998XEK 366 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 190 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 156 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 317 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 352 bp overlap
Crx 1 dataset
Motif ES_0h ES_0h-Crx_MA0467.3 6 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 272 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 125 bp overlap
ESRRA 2 datasets
Motif DE_12h DE_12h-ESRRA_MA0592.4 9 bp overlap
Motif ES_0h ES_0h-ESRRA_MA0592.4 9 bp overlap
ESRRB 2 datasets
Motif DE_12h DE_12h-ESRRB_MA0141.4 10 bp overlap
Motif ES_0h ES_0h-ESRRB_MA0141.4 10 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 391 bp overlap
Esrrg 2 datasets
Motif DE_12h DE_12h-Esrrg_MA0643.2 9 bp overlap
Motif ES_0h ES_0h-Esrrg_MA0643.2 9 bp overlap
FEZF2 1 dataset
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
FIGLA 2 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
FOXA1 1 dataset
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 145 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 191 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 333 bp overlap
ChIP DE DE-GATA4-2 391 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 310 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 241 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 371 bp overlap
ChIP DE DE-GATA6-2 391 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 247 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 199 bp overlap
GSC 1 dataset
Motif ES_0h ES_0h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif ES_0h ES_0h-GSC2_MA0891.2 6 bp overlap
HDAC2 1 dataset
ChIP H1 ENCFF939VKA 237 bp overlap
HOXC11 2 datasets
Motif DE_12h DE_12h-HOXC11_MA0651.3 11 bp overlap
Motif ES_0h ES_0h-HOXC11_MA0651.3 11 bp overlap
HOXC12 1 dataset
Motif ES_0h ES_0h-HOXC12_MA0906.2 10 bp overlap
HOXC13 1 dataset
Motif ES_0h ES_0h-HOXC13_MA0907.2 9 bp overlap
HOXD10 2 datasets
Motif DE_12h DE_12h-HOXD10_MA1506.2 10 bp overlap
Motif ES_0h ES_0h-HOXD10_MA1506.2 10 bp overlap
Hand1 2 datasets
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
Motif ES_0h ES_0h-Hand1_MA2123.1 9 bp overlap
Hand1::Tcf3 2 datasets
Motif DE_12h DE_12h-Hand1Tcf3_MA0092.2 9 bp overlap
Motif ES_0h ES_0h-Hand1Tcf3_MA0092.2 9 bp overlap
Hmga1 1 dataset
Motif ES_0h ES_0h-Hmga1_MA2124.1 8 bp overlap
IKZF1 2 datasets
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
Motif ES_0h ES_0h-IKZF1_MA1508.2 8 bp overlap
JUND 1 dataset
ChIP H1 ENCFF468JZD 208 bp overlap
KLF14 1 dataset
Motif ES_0h ES_0h-KLF14_MA0740.2 9 bp overlap
KLF5 1 dataset
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
MAFK 1 dataset
Motif ES_0h ES_0h-MAFK_MA0496.4 10 bp overlap
MAZ 1 dataset
Motif ES_0h ES_0h-MAZ_MA1522.2 8 bp overlap
MEF2A 1 dataset
Motif ES_0h ES_0h-MEF2A_MA0052.5 10 bp overlap
MEF2B 1 dataset
Motif ES_0h ES_0h-MEF2B_MA0660.1 12 bp overlap
MEF2C 1 dataset
Motif ES_0h ES_0h-MEF2C_MA0497.2 11 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 284 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 204 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 382 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 391 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 209 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 391 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 391 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 270 bp overlap
ChIP hESC GSE18292.NANOG.hESC 133 bp overlap
NKX2-5 2 datasets
Motif DE_12h DE_12h-NKX2-5_MA0063.3 7 bp overlap
Motif ES_0h ES_0h-NKX2-5_MA0063.3 7 bp overlap
NR2C1 2 datasets
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
Motif ES_0h ES_0h-NR2C1_MA1535.2 6 bp overlap
NR2C2 2 datasets
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
Motif ES_0h ES_0h-NR2C2_MA1536.2 6 bp overlap
NR2F2 2 datasets
Motif DE_12h DE_12h-NR2F2_MA1111.2 7 bp overlap
Motif ES_0h ES_0h-NR2F2_MA1111.2 7 bp overlap
NR5A1 2 datasets
Motif DE_12h DE_12h-NR5A1_MA1540.3 12 bp overlap
Motif ES_0h ES_0h-NR5A1_MA1540.3 12 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 130 bp overlap
Nfatc2 2 datasets
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
Motif ES_0h ES_0h-Nfatc2_MA0152.3 8 bp overlap
Nr1H2 2 datasets
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Motif ES_0h ES_0h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 2 datasets
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Motif ES_0h ES_0h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 2 datasets
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Motif ES_0h ES_0h-Nr1h3_MA2337.1 6 bp overlap
Nr1h3::Rxra 2 datasets
Motif DE_12h DE_12h-Nr1h3Rxra_MA0494.2 16 bp overlap
Motif ES_0h ES_0h-Nr1h3Rxra_MA0494.2 16 bp overlap
Nr5A2 2 datasets
Motif DE_12h DE_12h-Nr5A2_MA0505.3 9 bp overlap
Motif ES_0h ES_0h-Nr5A2_MA0505.3 9 bp overlap
OTX1 1 dataset
Motif ES_0h ES_0h-OTX1_MA0711.2 6 bp overlap
OTX2 2 datasets
Motif ES_0h ES_0h-OTX2_MA0712.3 7 bp overlap
ChIP WTC11 ENCFF634NAO 245 bp overlap
PBX3 1 dataset
Motif ES_0h ES_0h-PBX3_MA1114.2 11 bp overlap
PGR 1 dataset
Motif ES_0h ES_0h-PGR_MA2327.1 9 bp overlap
PITX1 1 dataset
Motif ES_0h ES_0h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif ES_0h ES_0h-PITX3_MA0714.2 6 bp overlap
PKNOX1 1 dataset
Motif ES_0h ES_0h-PKNOX1_MA0782.3 10 bp overlap
POU5F1 9 datasets
ChIP GM23338 ENCFF333SNB 280 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 350 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 379 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 170 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 227 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 234 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 336 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 230 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 173 bp overlap
PRDM9 1 dataset
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
Ppara 2 datasets
Motif DE_12h DE_12h-Ppara_MA2338.1 7 bp overlap
Motif ES_0h ES_0h-Ppara_MA2338.1 7 bp overlap
RAD21 6 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 391 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 306 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 391 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 336 bp overlap
RHOXF1 1 dataset
Motif ES_0h ES_0h-RHOXF1_MA0719.2 6 bp overlap
RORA 2 datasets
Motif DE_12h DE_12h-RORA_MA0071.1 10 bp overlap
Motif ES_0h ES_0h-RORA_MA0071.1 10 bp overlap
Rarg 2 datasets
Motif DE_12h DE_12h-Rarg_MA0860.1 17 bp overlap
Motif ES_0h ES_0h-Rarg_MA0860.1 17 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 303 bp overlap
SMAD2 2 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
Motif ES_0h ES_0h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 352 bp overlap
SMARCA4 3 datasets
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 182 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 124 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 294 bp overlap
SMARCC1 2 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 251 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 242 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 127 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 225 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 193 bp overlap
ChIP WTC11 ENCFF688PEU 381 bp overlap
SP4 1 dataset
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
SP5 2 datasets
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SPIC 2 datasets
Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap
Motif ES_0h ES_0h-SPIC_MA0687.2 13 bp overlap
STAT1::STAT2 2 datasets
Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap
Motif ES_0h ES_0h-STAT1STAT2_MA0517.2 13 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 391 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 143 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 233 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 360 bp overlap
TCF4 2 datasets
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
Motif ES_0h ES_0h-TCF4_MA0830.3 8 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 358 bp overlap
TEAD4 3 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 391 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 213 bp overlap
TFAP2C 1 dataset
Motif ES_0h ES_0h-TFAP2C_MA0814.3 9 bp overlap
THRA 2 datasets
Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap
Motif ES_0h ES_0h-THRA_MA1969.2 18 bp overlap
THRB 4 datasets
Motif DE_12h DE_12h-THRB_MA1576.2 18 bp overlap
Motif ES_0h ES_0h-THRB_MA1576.2 18 bp overlap
ChIP Hep-G2 ENCSR430JGJ.THRB.Hep-G2 203 bp overlap
ChIP HepG2 ENCFF476INC 345 bp overlap
Tfcp2l1 2 datasets
Motif DE_12h DE_12h-Tfcp2l1_MA0145.2 14 bp overlap
Motif ES_0h ES_0h-Tfcp2l1_MA0145.2 14 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 313 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 168 bp overlap
ZEB1 2 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ZNF121 3 datasets
ChIP Hep-G2 ENCSR945QEW.ZNF121.Hep-G2 255 bp overlap
ChIP HepG2 ENCFF343YSL 391 bp overlap
ChIP WTC11 ENCFF291API 297 bp overlap
ZNF135 1 dataset
Motif ES_0h ES_0h-ZNF135_MA1587.1 14 bp overlap
ZNF148 1 dataset
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF184 2 datasets
ChIP WTC11 ENCFF352POG 354 bp overlap
ChIP WTC11 ENCFF352POG 334 bp overlap
ZNF460 1 dataset
Motif ES_0h ES_0h-ZNF460_MA1596.1 16 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 216 bp overlap
ZNF707 1 dataset
Motif ES_0h ES_0h-ZNF707_MA1715.1 15 bp overlap
ZNF770 5 datasets
Motif ES_0h ES_0h-ZNF770_MA2099.1 8 bp overlap
ChIP HEK293 ENCFF468FCG 184 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 299 bp overlap
ChIP Hep-G2 ENCSR510GKB.ZNF770.Hep-G2 248 bp overlap
ChIP HepG2 ENCFF233UVH 385 bp overlap
ZNF85 2 datasets
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
Motif ES_0h ES_0h-ZNF85_MA1720.2 12 bp overlap
Zfp335 2 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap
Zfp809 1 dataset
Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap