chr5 : 66,989,222 66,989,615
393 bp 78 TFs 0 linked genes
This 393 bp open chromatin element has no linked target genes and is bound by 78 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:66,984,222 – 66,994,615
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
78 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 379 bp overlap
ARNTL 3 datasets
ChIP U2OS GSE130602.ARNTL.U2OS 393 bp overlap
ChIP U2OS_DMSO GSE130506.ARNTL.U2OS_DMSO 393 bp overlap
ChIP U2OS_cordycepin GSE130506.ARNTL.U2OS_cordycepin 393 bp overlap
BRD2 2 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 141 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 147 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 170 bp overlap
BRD4 3 datasets
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801 317 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801_rDNA 317 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 273 bp overlap
CBFB 1 dataset
ChIP SaOS-2 GSE76937.CBFB.SaOS-2 273 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 176 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 71 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 279 bp overlap
CRY1 2 datasets
ChIP U2OS GSE130602.CRY1.U2OS 356 bp overlap
ChIP U2OS_DMSO GSE130506.CRY1.U2OS_DMSO 356 bp overlap
CRY2 1 dataset
ChIP U2OS GSE130602.CRY2.U2OS 393 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH ENCFF868MXA 312 bp overlap
CTCF 1 dataset
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 166 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 251 bp overlap
ELF3 2 datasets
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 250 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 262 bp overlap
ESR1 7 datasets
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 321 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 167 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 225 bp overlap
ChIP Ishikawa_siETV4-96h GSE129803.ESR1.Ishikawa_siETV4-96h 298 bp overlap
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 87 bp overlap
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 375 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 211 bp overlap
FOXA1 1 dataset
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 308 bp overlap
FOXL2 4 datasets
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 157 bp overlap
ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 167 bp overlap
ChIP KGN_1512 GSE138496.FOXL2.KGN_1512 131 bp overlap
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 204 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 163 bp overlap
GRHL2 3 datasets
ChIP HBE GSE46194.GRHL2.HBE 208 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 225 bp overlap
ChIP PEO1 GSE71018.GRHL2.PEO1 317 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
IRF4 1 dataset
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 85 bp overlap
Lef1 1 dataset
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 194 bp overlap
MEIS1 1 dataset
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 317 bp overlap
MXI1 2 datasets
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
ChIP IMR-90 ENCSR000EFE.MXI1.IMR-90 116 bp overlap
MYC 2 datasets
ChIP A-549 GSE112188.MYC.A-549 183 bp overlap
ChIP DLD-1_MYC-activated GSE117240.MYC.DLD-1_MYC-activated 196 bp overlap
MYCN 4 datasets
ChIP SH-EP_MYCNER_plusOHT GSE111905.MYCN.SH-EP_MYCNER_plusOHT 90 bp overlap
ChIP SH-EP_pRRL-MYCN GSE111905.MYCN.SH-EP_pRRL-MYCN 117 bp overlap
ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 144 bp overlap
ChIP SHEP-21N_24h GSE80151.MYCN.SHEP-21N_24h 144 bp overlap
NANOG 2 datasets
ChIP WA01 ENCSR000BMT.NANOG.WA01 124 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 181 bp overlap
PHF19 1 dataset
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 236 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 352 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 196 bp overlap
RELA 4 datasets
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 53 bp overlap
ChIP IMR-90_TNF GSE43070.RELA.IMR-90_TNF 122 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 187 bp overlap
ChIP SW480_16h_TNFa GSE102796.RELA.SW480_16h_TNFa 391 bp overlap
RUNX1 4 datasets
ChIP 697 GSE138031.RUNX1.697 205 bp overlap
ChIP MCF-10A GSE129314.RUNX1.MCF-10A 228 bp overlap
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 234 bp overlap
ChIP keratinocyte GSE98483.RUNX1.keratinocyte 191 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 192 bp overlap
RUNX2 2 datasets
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 285 bp overlap
ChIP SaOS-2 GSE76937.RUNX2.SaOS-2 178 bp overlap
RUVBL2 1 dataset
ChIP U2OS GSE130602.RUVBL2.U2OS 292 bp overlap
Runx1 2 datasets
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
SIX2 1 dataset
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 173 bp overlap
SMAD2-3 2 datasets
ChIP HGrC1_C134W-TGF GSE138496.SMAD2-3.HGrC1_C134W-TGF 135 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 304 bp overlap
SMAD3 3 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 267 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 163 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 228 bp overlap
SMARCA4 5 datasets
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 94 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 77 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 133 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 235 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 393 bp overlap
SMC1A 2 datasets
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 133 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d3 278 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 274 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 170 bp overlap
SP2 1 dataset
ChIP K-562 ENCSR000BNL.SP2.K-562 154 bp overlap
STAT3 2 datasets
ChIP MDA-MB-231 GSE152203.STAT3.MDA-MB-231 301 bp overlap
ChIP MDA-MB-231_EtOH GSE85579.STAT3.MDA-MB-231_EtOH 320 bp overlap
TAF1 1 dataset
ChIP K-562 ENCSR000BKS.TAF1.K-562 195 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 335 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 164 bp overlap
TCF7 1 dataset
Motif DE_12h DE_12h-TCF7_MA0769.3 7 bp overlap
TCF7L2 1 dataset
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
TEAD1 5 datasets
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 393 bp overlap
ChIP adipocyte GSE140782.TEAD1.adipocyte 184 bp overlap
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 296 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 161 bp overlap
TEAD3 1 dataset
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
TEAD4 12 datasets
ChIP H1 ENCFF778PAX 238 bp overlap
ChIP HUCCT1 GSE68296.TEAD4.HUCCT1 271 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 172 bp overlap
ChIP MDA-MB-231 GSE66081.TEAD4.MDA-MB-231 308 bp overlap
ChIP MKN28 GSE44416.TEAD4.MKN28 239 bp overlap
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 266 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.TEAD4.PC-9_1DF_DMSO 329 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 293 bp overlap
ChIP PC-9_2DF_DMSO GSE131687.TEAD4.PC-9_2DF_DMSO 292 bp overlap
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 237 bp overlap
ChIP T-47D_Veh GSE125594.TEAD4.T-47D_Veh 262 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 262 bp overlap
TP53 3 datasets
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 176 bp overlap
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 149 bp overlap
ChIP UO-31_2h_4GY GSE100292.TP53.UO-31_2h_4GY 155 bp overlap
USF1 2 datasets
Motif DE_12h DE_12h-USF1_MA0093.4 10 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 121 bp overlap
USF2 1 dataset
ChIP IMR-90 ENCSR513UQG.USF2.IMR-90 158 bp overlap
YAP1 1 dataset
ChIP MDA-MB-231 GSE66081.YAP1.MDA-MB-231 298 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 145 bp overlap
YY1AP1 3 datasets
ChIP MCF-10A_DOX GSE115787.YY1AP1.MCF-10A_DOX 145 bp overlap
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 315 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 339 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 393 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 269 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 139 bp overlap
ZNF136 1 dataset
Motif DE_12h DE_12h-ZNF136_MA1588.1 15 bp overlap
ZNF24 1 dataset
Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap
ZNF416 1 dataset
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
ZNF680 1 dataset
ChIP HEK293 GSE76494.ZNF680.HEK293 181 bp overlap
ZNF708 1 dataset
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
ZSCAN31 1 dataset
Motif DE_12h DE_12h-ZSCAN31_MA1722.2 18 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap