chr5 : 58,491,318 58,491,520
202 bp 71 TFs 1 linked gene
This 202 bp open chromatin element is linked to GAPT and is bound by 71 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
GAPT at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:58,486,318 – 58,496,520
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
71 transcription factors
Source
Cell type
AR 1 dataset
ChIP THP-1_R1881 GSE131381.AR.THP-1_R1881 146 bp overlap
BACH2 1 dataset
ChIP B-cell_IL2 GSE102460.BACH2.B-cell_IL2 61 bp overlap
BCL11A 1 dataset
ChIP CD34_Day3_30min GSE104676.BCL11A.CD34_Day3_30min 149 bp overlap
BCL6 4 datasets
ChIP B-cell_GERMINAL_CENTER GSE68349.BCL6.B-cell_GERMINAL_CENTER 202 bp overlap
ChIP B-cell_GERMINAL_CENTER GSE43350.BCL6.B-cell_GERMINAL_CENTER 202 bp overlap
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 154 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 202 bp overlap
BCOR 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 178 bp overlap
BRD4 12 datasets
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 202 bp overlap
ChIP MOLM-14_CA25 GSE65138.BRD4.MOLM-14_CA25 147 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 202 bp overlap
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 202 bp overlap
ChIP MV4-11-B_BI00894999_35nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_35nM_4h 202 bp overlap
ChIP MV4-11-B_DMSO GSE101821.BRD4.MV4-11-B_DMSO 183 bp overlap
ChIP MV4-11_IBET GSE71776.BRD4.MV4-11_IBET 202 bp overlap
ChIP MV4-11_SGC GSE71776.BRD4.MV4-11_SGC 202 bp overlap
ChIP OCI-Ly1_DMSO GSE53601.BRD4.OCI-Ly1_DMSO 202 bp overlap
ChIP P493-6_MYC_0H GSE42262.BRD4.P493-6_MYC_0H 161 bp overlap
ChIP P493-6_MYC_1H GSE42262.BRD4.P493-6_MYC_1H 202 bp overlap
ChIP P493-6_MYC_24H GSE42262.BRD4.P493-6_MYC_24H 135 bp overlap
CBX8 1 dataset
ChIP A-549 ENCSR616MOB.CBX8.A-549 202 bp overlap
CD74 1 dataset
ChIP CLL_p1 GSE88955.CD74.CLL_p1 202 bp overlap
CDK8 3 datasets
ChIP MOLM-14 GSE65138.CDK8.MOLM-14 191 bp overlap
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 202 bp overlap
ChIP SET-2 GSE65138.CDK8.SET-2 202 bp overlap
CDK9 1 dataset
ChIP MV4-11_DMSO GSE82116.CDK9.MV4-11_DMSO 202 bp overlap
CEBPA 6 datasets
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 186 bp overlap
ChIP SKH1 GSE102697.CEBPA.SKH1 105 bp overlap
ChIP SKH1_10d GSE87283.CEBPA.SKH1_10d 152 bp overlap
ChIP SKH1_CEBPA-ER GSE102697.CEBPA.SKH1_CEBPA-ER 159 bp overlap
ChIP SKH1_CEBPA-ER_E2 GSE102697.CEBPA.SKH1_CEBPA-ER_E2 161 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.CEBPA.SKH1_RUNX1-EVI1_KD 148 bp overlap
CEBPB 1 dataset
ChIP monocyte_IFNg-LPS GSE120943.CEBPB.monocyte_IFNg-LPS 112 bp overlap
CREBBP 4 datasets
ChIP monocyte_IFNg GSE131294.CREBBP.monocyte_IFNg 202 bp overlap
ChIP monocyte_Resting GSE131294.CREBBP.monocyte_Resting 153 bp overlap
ChIP tonsil_GCBC_p5 GSE89688.CREBBP.tonsil_GCBC_p5 202 bp overlap
ChIP tonsil_GCBc_p4 GSE89688.CREBBP.tonsil_GCBc_p4 202 bp overlap
CTCF 2 datasets
ChIP peripheral-blood-neutrophil_US-1 GSE126755.CTCF.peripheral-blood-neutrophil_US-1 170 bp overlap
ChIP spleen ENCSR225YGX.CTCF.spleen 190 bp overlap
ELF1 3 datasets
ChIP GM12878 ENCFF692SMY 202 bp overlap
ChIP GM12878 ENCSR841NDX.ELF1.GM12878 202 bp overlap
ChIP SEM GSE117864.ELF1.SEM 144 bp overlap
EP300 3 datasets
ChIP AML GSE131939.EP300.AML 114 bp overlap
ChIP Kasumi-1 GSE115115.EP300.Kasumi-1 155 bp overlap
ChIP tibial nerve ENCFF346AYA 202 bp overlap
ERG 3 datasets
ChIP ME-1 GSE46044.ERG.ME-1 124 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 187 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 202 bp overlap
ETS1 1 dataset
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 202 bp overlap
EVI1 2 datasets
ChIP SKH1 GSE87283.EVI1.SKH1 197 bp overlap
ChIP SKH1_10d GSE87283.EVI1.SKH1_10d 162 bp overlap
EZH2 3 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 197 bp overlap
ChIP peripheral-blood-mononuclear-cell GSE115772.EZH2.peripheral-blood-mononuclear-cell 152 bp overlap
ChIP peripheral-blood-mononuclear-cell_mut GSE115772.EZH2.peripheral-blood-mononuclear-cell_mut 202 bp overlap
FLI1 3 datasets
ChIP CTV-1_DSG GSE128835.FLI1.CTV-1_DSG 202 bp overlap
ChIP NB4 GSE23730.FLI1.NB4 189 bp overlap
ChIP UAE_ZINC GSE23730.FLI1.UAE_ZINC 170 bp overlap
FOXO1 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE68349.FOXO1.B-cell_GERMINAL_CENTER 202 bp overlap
FOXP1 2 datasets
ChIP B-cell_CD77-pos GSE114803.FOXP1.B-cell_CD77-pos 145 bp overlap
ChIP B-cell_IgD-pos GSE114803.FOXP1.B-cell_IgD-pos 202 bp overlap
GATA2 4 datasets
ChIP SKH1 GSE87283.GATA2.SKH1 202 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.GATA2.SKH1_RUNX1-EVI1_KD 202 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 202 bp overlap
ChIP TSU-1621MT GSE60477.GATA2.TSU-1621MT 193 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 202 bp overlap
ChIP DE DE-GATA4-2 202 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 168 bp overlap
ChIP DE DE-GATA6-2 202 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 202 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 202 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 202 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 202 bp overlap
HDAC1 1 dataset
ChIP NB4 GSE126720.HDAC1.NB4 148 bp overlap
IKZF2 4 datasets
ChIP GM12878 ENCFF238LYK 202 bp overlap
ChIP GM12878 ENCFF918AID 202 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 202 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 202 bp overlap
INTS13 1 dataset
ChIP monocyte GSE106359.INTS13.monocyte 199 bp overlap
JMJD1C 2 datasets
ChIP HL-60 GSE63484.JMJD1C.HL-60 151 bp overlap
ChIP NB4 GSE63484.JMJD1C.NB4 165 bp overlap
KDM1A 2 datasets
ChIP Kasumi-1_DMSO GSE71739.KDM1A.Kasumi-1_DMSO 108 bp overlap
ChIP SKNO-1_RN1 GSE71739.KDM1A.SKNO-1_RN1 202 bp overlap
KMT2A 4 datasets
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 202 bp overlap
ChIP L826 GSE83671.KMT2A.L826 202 bp overlap
ChIP MV4-11 GSE79899.KMT2A.MV4-11 63 bp overlap
ChIP blood_cord GSE83671.KMT2A.blood_cord 202 bp overlap
KMT2B 1 dataset
ChIP AML GSE112074.KMT2B.AML 140 bp overlap
LDB1 2 datasets
ChIP Kasumi-1_ctrl GSE121280.LDB1.Kasumi-1_ctrl 202 bp overlap
ChIP Kasumi-1_siRE GSE121280.LDB1.Kasumi-1_siRE 202 bp overlap
LMO2 2 datasets
ChIP Kasumi-1_SICTR GSE60130.LMO2.Kasumi-1_SICTR 135 bp overlap
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 194 bp overlap
LYL1 3 datasets
ChIP Kasumi-1 GSE63484.LYL1.Kasumi-1 183 bp overlap
ChIP THP-1 GSE63484.LYL1.THP-1 132 bp overlap
ChIP TSU-1621MT GSE60477.LYL1.TSU-1621MT 172 bp overlap
MAX 3 datasets
ChIP P493-6 GSE42262.MAX.P493-6 202 bp overlap
ChIP P493-6_CMYC_1H GSE36354.MAX.P493-6_CMYC_1H 202 bp overlap
ChIP P493-6_CMYC_24H GSE36354.MAX.P493-6_CMYC_24H 183 bp overlap
MECOM 2 datasets
ChIP SKH1_CEBPA-ER_E2 GSE102697.MECOM.SKH1_CEBPA-ER_E2 134 bp overlap
ChIP SKH1_E2 GSE102697.MECOM.SKH1_E2 138 bp overlap
MED1 2 datasets
ChIP OCI-Ly1 GSE53601.MED1.OCI-Ly1 202 bp overlap
ChIP P493-6 GSE36354.MED1.P493-6 69 bp overlap
MEIS1 2 datasets
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 202 bp overlap
ChIP SEM GSE38339.MEIS1.SEM 168 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 178 bp overlap
MYB 2 datasets
ChIP Loucy GSE94000.MYB.Loucy 202 bp overlap
ChIP THP-1_OG86 GSE90769.MYB.THP-1_OG86 178 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 129 bp overlap
NR3C1 1 dataset
ChIP THP-1_Dex GSE99887.NR3C1.THP-1_Dex 202 bp overlap
NR4A1 1 dataset
ChIP Kasumi-1 GSE79491.NR4A1.Kasumi-1 202 bp overlap
POLR2A 2 datasets
ChIP NB4 ENCFF780KAX 202 bp overlap
ChIP spleen ENCFF955VIQ 202 bp overlap
RAD21 6 datasets
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-120m-Flavo-000m 168 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.RAD21.THP-1_Pam3csk-150m-Flavo-030m 114 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 202 bp overlap
ChIP THP-1_eGFP-IFNb GSE103477.RAD21.THP-1_eGFP-IFNb 202 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.RAD21.peripheral-blood-neutrophil_PMA-1 202 bp overlap
ChIP peripheral-blood-neutrophil_US-1 GSE126755.RAD21.peripheral-blood-neutrophil_US-1 202 bp overlap
RELA 1 dataset
ChIP THP-1_eGFP-Pam3csk-4h GSE103477.RELA.THP-1_eGFP-Pam3csk-4h 202 bp overlap
RNF2 3 datasets
ChIP A-549 ENCSR798EGJ.RNF2.A-549 170 bp overlap
ChIP ME-1_Con GSE128771.RNF2.ME-1_Con 112 bp overlap
ChIP ME-1_KD GSE128771.RNF2.ME-1_KD 202 bp overlap
RUNX1 16 datasets
ChIP AML GSE111917.RUNX1.AML 126 bp overlap
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 161 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 161 bp overlap
ChIP Kasumi-1 GSE45738.RUNX1.Kasumi-1 202 bp overlap
ChIP ME-1 GSE46044.RUNX1.ME-1 202 bp overlap
ChIP ME-1 GSE117138.RUNX1.ME-1 202 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.RUNX1.ME-1_CBFB-MYH11-KD 202 bp overlap
ChIP ME-1_Con GSE128771.RUNX1.ME-1_Con 202 bp overlap
ChIP ME-1_Human-leukemia_AI-10-49 GSE101789.RUNX1.ME-1_Human-leukemia_AI-10-49 202 bp overlap
ChIP ME-1_KD GSE128771.RUNX1.ME-1_KD 202 bp overlap
ChIP NB4 GSE81992.RUNX1.NB4 202 bp overlap
ChIP SKH1 GSE87283.RUNX1.SKH1 202 bp overlap
ChIP SKH1_10d GSE87283.RUNX1.SKH1_10d 202 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.RUNX1.SKH1_RUNX1-EVI1_KD 192 bp overlap
ChIP SKNO-1 GSE23730.RUNX1.SKNO-1 155 bp overlap
ChIP U-937 GSE65427.RUNX1.U-937 133 bp overlap
RUNX1T1 2 datasets
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 195 bp overlap
ChIP Kasumi-1_shTAF1-AE GSE115115.RUNX1T1.Kasumi-1_shTAF1-AE 176 bp overlap
SKI 1 dataset
ChIP HL-60 GSE107553.SKI.HL-60 142 bp overlap
SMAD1 1 dataset
ChIP CD34_PROG_BMP GSE29194.SMAD1.CD34_PROG_BMP 202 bp overlap
SMARCA4 2 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 202 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 202 bp overlap
SMC1A 1 dataset
ChIP monocyte_INFg GSE98367.SMC1A.monocyte_INFg 112 bp overlap
SMC3 1 dataset
ChIP peripheral-blood-neutrophil_Ecoli-1 GSE126755.SMC3.peripheral-blood-neutrophil_Ecoli-1 202 bp overlap
SPI1 37 datasets
ChIP BDMC_donorG GSE128834.SPI1.BDMC_donorG 202 bp overlap
ChIP BDMC_donorH GSE128834.SPI1.BDMC_donorH 202 bp overlap
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 164 bp overlap
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 202 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 161 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 181 bp overlap
ChIP GM12878 ENCFF134LCP 202 bp overlap
ChIP GM12891 ENCFF563IUT 202 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 202 bp overlap
ChIP HL-60 ENCFF645GBT 182 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 195 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 124 bp overlap
ChIP KG-1 GSE128834.SPI1.KG-1 180 bp overlap
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 202 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 202 bp overlap
ChIP ME-1 GSE46044.SPI1.ME-1 202 bp overlap
ChIP NB4 GSE128834.SPI1.NB4 202 bp overlap
ChIP OCI-Ly10 GSE56857.SPI1.OCI-Ly10 163 bp overlap
ChIP OCI-Ly3 GSE56857.SPI1.OCI-Ly3 176 bp overlap
ChIP OCI-Ly7 GSE69558.SPI1.OCI-Ly7 202 bp overlap
ChIP RS4-11 GSE71616.SPI1.RS4-11 202 bp overlap
ChIP RS4-11_DEX GSE71616.SPI1.RS4-11_DEX 202 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 198 bp overlap
ChIP THP-1_DIFF GSE25426.SPI1.THP-1_DIFF 95 bp overlap
ChIP U-937 GSE128834.SPI1.U-937 186 bp overlap
ChIP dendrite GSE58864.SPI1.dendrite 151 bp overlap
ChIP macrophage_D7_donorP GSE128834.SPI1.macrophage_D7_donorP 192 bp overlap
ChIP monocyte GSE31621.SPI1.monocyte 159 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.SPI1.monocyte_MACROPHAGE 171 bp overlap
ChIP primary-B-cell_donorA GSE128834.SPI1.primary-B-cell_donorA 202 bp overlap
ChIP primary-B-cell_donorC GSE128834.SPI1.primary-B-cell_donorC 129 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 202 bp overlap
ChIP primary-monocyte_4h_donorO GSE128834.SPI1.primary-monocyte_4h_donorO 193 bp overlap
ChIP primary-monocyte_LPS-4h_donorO GSE128834.SPI1.primary-monocyte_LPS-4h_donorO 160 bp overlap
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 138 bp overlap
ChIP primary-neutrophil_donorE GSE128834.SPI1.primary-neutrophil_donorE 202 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 202 bp overlap
SPIB 1 dataset
ChIP OCI-Ly10 GSE56857.SPIB.OCI-Ly10 109 bp overlap
SREBP2 2 datasets
ChIP monocyte GSE129202.SREBP2.monocyte 202 bp overlap
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 202 bp overlap
STAT1 4 datasets
ChIP CD14 GSE43036.STAT1.CD14 131 bp overlap
ChIP CD14_INFG GSE43036.STAT1.CD14_INFG 187 bp overlap
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 168 bp overlap
ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 159 bp overlap
STAT3 5 datasets
ChIP B-cell GSE123398.STAT3.B-cell 202 bp overlap
ChIP monocyte_IFNg GSE120943.STAT3.monocyte_IFNg 169 bp overlap
ChIP monocyte_IL10 GSE120943.STAT3.monocyte_IL10 193 bp overlap
ChIP monocyte_LPS GSE120943.STAT3.monocyte_LPS 190 bp overlap
ChIP monocyte_resting GSE120943.STAT3.monocyte_resting 172 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TAL1 2 datasets
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 189 bp overlap
ChIP TSU-1621MT GSE60477.TAL1.TSU-1621MT 202 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 156 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 202 bp overlap
TCF4 1 dataset
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 159 bp overlap
TCF7L2 1 dataset
ChIP CD34_PROG_BIO GSE29194.TCF7L2.CD34_PROG_BIO 202 bp overlap
ZBTB16 1 dataset
ChIP KG-1_shEZH2 GSE109619.ZBTB16.KG-1_shEZH2 202 bp overlap