chr5 : 16,713,393 16,713,963
570 bp 79 TFs 0 linked genes
This 570 bp open chromatin element has no linked target genes and is bound by 79 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:16,708,393 – 16,718,963
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
79 transcription factors
Source
Cell type
AR 3 datasets
ChIP 22Rv1_shKDM3A GSE109748.AR.22Rv1_shKDM3A 193 bp overlap
ChIP LAPC-4_R1881 GSE148358.AR.LAPC-4_R1881 108 bp overlap
ChIP LNCaP_L388M_shFOXA1_Ethanol GSE128883.AR.LNCaP_L388M_shFOXA1_Ethanol 223 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 253 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 388 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 570 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 393 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 197 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 426 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 457 bp overlap
BMI1 1 dataset
ChIP MCF-7 ENCSR966YYJ.BMI1.MCF-7 279 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 460 bp overlap
BRD4 16 datasets
ChIP 402-91 GSE111253.BRD4.402-91 243 bp overlap
ChIP HAP1 GSE108387.BRD4.HAP1 340 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 567 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 340 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 570 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 570 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 446 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 380 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 210 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 565 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 570 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 570 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 272 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 458 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 282 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 106 bp overlap
CEBPD 1 dataset
ChIP Hep-G2 ENCSR000BQJ.CEBPD.Hep-G2 126 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 253 bp overlap
CHD7 2 datasets
ChIP WA01 ENCSR000AVA.CHD7.WA01 132 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 570 bp overlap
COMMD3-BMI1,BMI1 1 dataset
ChIP MCF-7 ENCFF570JPP 123 bp overlap
CTCF 43 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 243 bp overlap
ChIP A673 ENCFF123WOM 315 bp overlap
ChIP AG10803 ENCFF549AQK 251 bp overlap
ChIP BE2C ENCFF757SRF 273 bp overlap
ChIP Caco-2 ENCFF934QYS 217 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 336 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 248 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 108 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 332 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 178 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 195 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 254 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 102 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 160 bp overlap
ChIP MCF-7 ENCFF198DQX 214 bp overlap
ChIP MCF-7 ENCFF494VXA 214 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 206 bp overlap
ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 190 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 317 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 109 bp overlap
ChIP SK-N-SH ENCFF731NJX 251 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 103 bp overlap
ChIP SK-N-SH ENCSR000EIC.CTCF.SK-N-SH 116 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 167 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 139 bp overlap
ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 164 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 168 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 119 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 212 bp overlap
ChIP cardiac muscle cell ENCFF728JSA 295 bp overlap
ChIP cardiac_muscle ENCSR000DTI.CTCF.cardiac_muscle 206 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 245 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 140 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 203 bp overlap
ChIP fibroblast of dermis ENCFF986DNJ 169 bp overlap
ChIP fibroblast of pulmonary artery ENCFF742RSV 256 bp overlap
ChIP fibroblast_PULMONARY_ARTERY ENCSR000DUX.CTCF.fibroblast_PULMONARY_ARTERY 140 bp overlap
ChIP fibroblast_SKIN_ABDOMEN ENCSR000DPV.CTCF.fibroblast_SKIN_ABDOMEN 132 bp overlap
ChIP gastroesophageal-sphincter ENCSR186NVR.CTCF.gastroesophageal-sphincter 150 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 232 bp overlap
ChIP neural cell ENCFF335ADI 332 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 222 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 156 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 215 bp overlap
EP300 1 dataset
ChIP neural ENCSR843ZUP.EP300.neural 437 bp overlap
ESR1 8 datasets
ChIP Ishikawa_E2 GSE109891.ESR1.Ishikawa_E2 93 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 227 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 312 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 246 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 235 bp overlap
ChIP MCF-7_E2 GSE102410.ESR1.MCF-7_E2 211 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 205 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 570 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 177 bp overlap
GATA2 3 datasets
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 314 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 182 bp overlap
GATA4 1 dataset
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 244 bp overlap
HNF4A 1 dataset
ChIP hiPSC GSE104613.HNF4A.hiPSC 230 bp overlap
HNRNPH1 2 datasets
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 224 bp overlap
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 164 bp overlap
JUN 1 dataset
ChIP MCF-7_Tamoxifen GSE102410.JUN.MCF-7_Tamoxifen 50 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 505 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 148 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 265 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 231 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 276 bp overlap
MAZ 1 dataset
ChIP HEK293 GSE76494.MAZ.HEK293 299 bp overlap
MED1 2 datasets
ChIP RH4 GSE83726.MED1.RH4 245 bp overlap
ChIP dopaminergic-neuron_Dopamine_neurons GSE93905.MED1.dopaminergic-neuron_Dopamine_neurons 146 bp overlap
MXI1 2 datasets
ChIP neural ENCSR934NHU.MXI1.neural 279 bp overlap
ChIP neural cell ENCFF623HQN 344 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 202 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 220 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 355 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 84 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 386 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 306 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_G GSE118494.NCAPH2.IMR-90_FLAG_G 165 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 124 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 412 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 303 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 246 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 570 bp overlap
POLR2A 4 datasets
ChIP GM23338 ENCFF450WCS 452 bp overlap
ChIP GM23338 ENCFF450WCS 407 bp overlap
ChIP neural cell ENCFF604SPB 190 bp overlap
ChIP neural cell ENCFF604SPB 365 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 485 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 159 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 254 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 570 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 186 bp overlap
RAD21 5 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 326 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 570 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 156 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 570 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 569 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 557 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 570 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 530 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 510 bp overlap
RBPJ 2 datasets
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 154 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 424 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 335 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 138 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 170 bp overlap
REST 3 datasets
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 377 bp overlap
ChIP neural ENCSR000BTV.REST.neural 570 bp overlap
ChIP neural cell ENCFF882LXX 439 bp overlap
RFX1 9 datasets
ChIP HepG2 ENCFF144SCF 319 bp overlap
ChIP K-562 ENCSR968GIB.RFX1.K-562 522 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 343 bp overlap
ChIP K562 ENCFF421AVO 323 bp overlap
ChIP K562 ENCFF809XVG 152 bp overlap
ChIP MCF-7 ENCFF782EZS 251 bp overlap
ChIP MCF-7 ENCFF973QAD 247 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 335 bp overlap
ChIP MCF-7 ENCSR788XNX.RFX1.MCF-7 311 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 336 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 131 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 176 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 99 bp overlap
SMARCA2 1 dataset
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 294 bp overlap
SMARCA4 9 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 209 bp overlap
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 129 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 298 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 465 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 445 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 370 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 565 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 485 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 255 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 529 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 213 bp overlap
SMARCC1 2 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 465 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 212 bp overlap
SMC1 1 dataset
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 217 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 103 bp overlap
SOX2 10 datasets
ChIP HNSC GSE69479.SOX2.HNSC 570 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 241 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 365 bp overlap
ChIP RENVM_SHSOX2 GSE49404.SOX2.RENVM_SHSOX2 87 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 295 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 430 bp overlap
ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 191 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 186 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 212 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 498 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 202 bp overlap
SUZ12 1 dataset
ChIP Karpas-422_CPI360-D4 GSE134136.SUZ12.Karpas-422_CPI360-D4 165 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 121 bp overlap
TAF1 2 datasets
ChIP neural ENCSR000BTX.TAF1.neural 125 bp overlap
ChIP neural cell ENCFF468SPD 435 bp overlap
TARDBP 2 datasets
ChIP K-562 GSE120104.TARDBP.K-562 185 bp overlap
ChIP K-562 ENCSR429XTR.TARDBP.K-562 177 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 175 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 441 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 247 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 193 bp overlap
USF1 3 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 243 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 214 bp overlap
USF2 2 datasets
ChIP IMR-90 ENCSR513UQG.USF2.IMR-90 139 bp overlap
ChIP WTC11 ENCFF139JAW 417 bp overlap
YY1 2 datasets
ChIP WA01 ENCSR000BKD.YY1.WA01 147 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 221 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 277 bp overlap
ZKSCAN1 3 datasets
ChIP Hep-G2 ENCSR157CAU.ZKSCAN1.Hep-G2 77 bp overlap
ChIP K-562 ENCSR882ERE.ZKSCAN1.K-562 114 bp overlap
ChIP K562 ENCFF977CBA 140 bp overlap
ZNF341 2 datasets
ChIP HEK293 ENCFF944VMC 414 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 345 bp overlap
ZNF547 3 datasets
ChIP HEK293 ENCFF693MRM 326 bp overlap
ChIP HEK293 ENCSR909TSW.ZNF547.HEK293 310 bp overlap
ChIP HEK293 GSE76494.ZNF547.HEK293 159 bp overlap
ZNF586 1 dataset
ChIP HEK293 GSE76494.ZNF586.HEK293 159 bp overlap