chr4 : 159,503,177 159,503,599
422 bp 123 TFs 0 linked genes
This 422 bp open chromatin element has no linked target genes and is bound by 123 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:159,498,177 – 159,508,599
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
123 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 255 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 343 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 342 bp overlap
Alx1 1 dataset
Motif DE_12h DE_12h-Alx1_MA0854.2 8 bp overlap
Alx4 1 dataset
Motif DE_12h DE_12h-Alx4_MA0853.2 12 bp overlap
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BCL11A 2 datasets
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 171 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 120 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 159 bp overlap
BRD4 5 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 338 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 422 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 283 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 362 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 116 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
Bcl11B 1 dataset
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
CEBPA 1 dataset
Motif DE_12h DE_12h-CEBPA_MA0102.5 10 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 422 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 383 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 217 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
DMRTA2 2 datasets
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
Motif ES_0h ES_0h-DMRTA2_MA1478.2 6 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
Dmbx1 1 dataset
Motif DE_12h DE_12h-Dmbx1_MA0883.2 10 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 114 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 136 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 223 bp overlap
ESR1 1 dataset
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 221 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 422 bp overlap
Elf5 1 dataset
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
FEZF2 2 datasets
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
FOXA1 16 datasets
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 66 bp overlap
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 133 bp overlap
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 61 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 422 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 178 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 299 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 287 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 161 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 253 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 206 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 294 bp overlap
ChIP T-47D_flp-ctrl GSE99479.FOXA1.T-47D_flp-ctrl 185 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 289 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 208 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 282 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 133 bp overlap
FOXA2 5 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 298 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 365 bp overlap
ChIP DE DE-FOXA2-1 310 bp overlap
ChIP DE DE-FOXA2-2 411 bp overlap
ChIP pancreas_CARN1618 ERP008682.FOXA2.pancreas_CARN1618 173 bp overlap
FOXE1 1 dataset
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
FOXF2 1 dataset
Motif DE_12h DE_12h-FOXF2_MA0030.2 9 bp overlap
FOXK1 1 dataset
Motif DE_12h DE_12h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_12h DE_12h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_12h DE_12h-FOXL1_MA0033.2 7 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 174 bp overlap
FOXO4 1 dataset
Motif DE_12h DE_12h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 207 bp overlap
FOXP2 1 dataset
Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap
FOXP3 1 dataset
Motif DE_12h DE_12h-FOXP3_MA0850.1 7 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 334 bp overlap
Foxf1 1 dataset
Motif DE_12h DE_12h-Foxf1_MA1606.2 7 bp overlap
Foxj3 1 dataset
Motif DE_12h DE_12h-Foxj3_MA0851.2 9 bp overlap
Foxo1 1 dataset
Motif DE_12h DE_12h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_12h DE_12h-Foxo3_MA0157.4 7 bp overlap
GATA1 1 dataset
Motif DE_12h DE_12h-GATA1_MA0035.5 7 bp overlap
GATA3 1 dataset
ChIP T-47D ENCSR000BMX.GATA3.T-47D 265 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-1 296 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
GRHL2 1 dataset
Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000BNR.HDAC2.WA01 195 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HNF1A 2 datasets
Motif DE_12h DE_12h-HNF1A_MA0046.3 13 bp overlap
Motif ES_0h ES_0h-HNF1A_MA0046.3 13 bp overlap
HNF1B 2 datasets
Motif DE_12h DE_12h-HNF1B_MA0153.2 13 bp overlap
Motif ES_0h ES_0h-HNF1B_MA0153.2 13 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
Hmx1 1 dataset
Motif DE_12h DE_12h-Hmx1_MA0896.2 9 bp overlap
Hmx3 1 dataset
Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
ISL2 2 datasets
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
Motif ES_0h ES_0h-ISL2_MA0914.2 6 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 283 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 357 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 422 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 422 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 422 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 365 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000EBZ.JUND.WA01 136 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 159 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 201 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
MYF6 1 dataset
Motif DE_12h DE_12h-MYF6_MA0667.1 10 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
NANOG 9 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 244 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 422 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 299 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 202 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 256 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 422 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 422 bp overlap
ChIP hESC GSE18292.NANOG.hESC 163 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 197 bp overlap
Nkx3-2 2 datasets
Motif DE_12h DE_12h-Nkx3-2_MA0122.4 10 bp overlap
Motif ES_0h ES_0h-Nkx3-2_MA0122.4 10 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
ONECUT1 2 datasets
ChIP H9 ERP004206.ONECUT1.H9 135 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 199 bp overlap
OTX2 1 dataset
ChIP retina_pigment GSE60024.OTX2.retina_pigment 256 bp overlap
PGR 1 dataset
Motif DE_12h DE_12h-PGR_MA2327.1 9 bp overlap
POU2F1 1 dataset
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
POU5F1 14 datasets
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 422 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 307 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 422 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 220 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 235 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 346 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 173 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 422 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 422 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 303 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 146 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR362VCG.POU5F1.neuron_bipolar_doxy_4d 123 bp overlap
Pgr 1 dataset
Motif DE_12h DE_12h-Pgr_MA2323.1 17 bp overlap
Prdm4 1 dataset
Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 135 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 162 bp overlap
SMARCA4 5 datasets
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 245 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 261 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 303 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 422 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 333 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 384 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 300 bp overlap
SMARCC1 3 datasets
ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 193 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 368 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 349 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX12 1 dataset
Motif DE_12h DE_12h-SOX12_MA1561.2 10 bp overlap
SOX14 1 dataset
Motif DE_12h DE_12h-SOX14_MA1562.2 9 bp overlap
SOX18 1 dataset
Motif DE_12h DE_12h-SOX18_MA1563.2 8 bp overlap
SOX2 2 datasets
ChIP hESC GSE69479.SOX2.hESC 260 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 337 bp overlap
SOX21 1 dataset
Motif DE_12h DE_12h-SOX21_MA0866.1 15 bp overlap
SOX9 1 dataset
Motif DE_12h DE_12h-SOX9_MA0077.2 8 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 422 bp overlap
Sox7 1 dataset
Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 148 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 373 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 369 bp overlap
TEAD1 1 dataset
ChIP HEK293_siE1A GSE130135.TEAD1.HEK293_siE1A 114 bp overlap
TEAD4 4 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 331 bp overlap
ChIP H1 ENCFF778PAX 94 bp overlap
ChIP T-47D_E2 GSE125594.TEAD4.T-47D_E2 210 bp overlap
ChIP T-47D_Veh GSE125594.TEAD4.T-47D_Veh 257 bp overlap
TEF 2 datasets
Motif DE_12h DE_12h-TEF_MA0843.2 10 bp overlap
Motif ES_0h ES_0h-TEF_MA0843.2 10 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 201 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 259 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 270 bp overlap
YY1AP1 2 datasets
ChIP T-47D_E2 GSE125594.YY1AP1.T-47D_E2 324 bp overlap
ChIP T-47D_Veh GSE125594.YY1AP1.T-47D_Veh 306 bp overlap
ZIM3 1 dataset
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 153 bp overlap
ZNF157 1 dataset
Motif DE_12h DE_12h-ZNF157_MA2331.1 21 bp overlap