chr4 : 110,633,694 110,634,390
696 bp 85 TFs 1 linked gene
This 696 bp open chromatin element is linked to PITX2 and is bound by 85 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PITX2 4.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:110,628,694 – 110,639,390
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
85 transcription factors
Source
Cell type
AATF 1 dataset
ChIP NALM-6 GSE93626.AATF.NALM-6 435 bp overlap
AGO1 2 datasets
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 183 bp overlap
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 378 bp overlap
AR 3 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 220 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 243 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 572 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 265 bp overlap
BCOR 2 datasets
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 566 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 666 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 400 bp overlap
BRD4 5 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 514 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 302 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 669 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 367 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 478 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 397 bp overlap
CBX7 4 datasets
ChIP HEK293T_PCGF2fl GSE119618.CBX7.HEK293T_PCGF2fl 172 bp overlap
ChIP hESC GSE133412.CBX7.hESC 177 bp overlap
ChIP hESC_QKO GSE133412.CBX7.hESC_QKO 176 bp overlap
ChIP hESC_TKO GSE133412.CBX7.hESC_TKO 183 bp overlap
CBX8 2 datasets
ChIP H1 ENCFF095JHA 335 bp overlap
ChIP K-562 ENCSR000ATW.CBX8.K-562 189 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 278 bp overlap
CHD1 4 datasets
ChIP WA01 ENCSR000AQK.CHD1.WA01 196 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 348 bp overlap
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 358 bp overlap
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 491 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 632 bp overlap
CTCF 3 datasets
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 235 bp overlap
ChIP esophagus_muscularis-mucosa ENCSR559KAB.CTCF.esophagus_muscularis-mucosa 277 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 320 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 251 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 270 bp overlap
ERG 1 dataset
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 203 bp overlap
ESR1 3 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 385 bp overlap
ChIP MCF-7_Y537S_DMSO GSE148277.ESR1.MCF-7_Y537S_DMSO 247 bp overlap
ChIP MCF-7_vehicle_45min_I2 GSE99626.ESR1.MCF-7_vehicle_45min_I2 364 bp overlap
EZH2 31 datasets
ChIP B cell ENCFF803EMO 313 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 230 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 310 bp overlap
ChIP GM23338 ENCFF613YON 696 bp overlap
ChIP GM23338 ENCFF886DXX 512 bp overlap
ChIP H1 ENCFF232NZA 696 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 696 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 696 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 696 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 422 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 169 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 395 bp overlap
ChIP SK-N-SH ENCFF657FZK 178 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 696 bp overlap
ChIP VCaP_DHAT_2H GSE28950.EZH2.VCaP_DHAT_2H 60 bp overlap
ChIP VCaP_ETOH GSE28950.EZH2.VCaP_ETOH 215 bp overlap
ChIP VCaP_ETOH GSE28950.EZH2.VCaP_ETOH 167 bp overlap
ChIP astrocyte ENCFF365JTP 696 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 696 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 180 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 411 bp overlap
ChIP hESC GSE113817.EZH2.hESC 649 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 200 bp overlap
ChIP hepatocyte ENCFF118DKH 172 bp overlap
ChIP hepatocyte ENCFF118DKH 357 bp overlap
ChIP hepatocyte ENCFF118DKH 95 bp overlap
ChIP neural cell ENCFF610EPB 401 bp overlap
ChIP neural cell ENCFF610EPB 393 bp overlap
ChIP neural progenitor cell ENCFF018MKA 696 bp overlap
ChIP neural progenitor cell ENCFF472NFV 696 bp overlap
ChIP prostate-cancer_plko GSE107780.EZH2.prostate-cancer_plko 209 bp overlap
FOXA1 3 datasets
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 198 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 320 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 242 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 412 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 217 bp overlap
GATA6 4 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 70 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 449 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 321 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 283 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 167 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 492 bp overlap
JARID2 3 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 696 bp overlap
ChIP hESC GSE133412.JARID2.hESC 180 bp overlap
ChIP hESC_TKO GSE133412.JARID2.hESC_TKO 67 bp overlap
JUN 1 dataset
ChIP HUES-8 GSE109524.JUN.HUES-8 687 bp overlap
KAT7 1 dataset
ChIP WTC11 ENCFF581TPB 511 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 217 bp overlap
KLF12 2 datasets
Motif DE_12h DE_12h-KLF12_MA0742.2 9 bp overlap
Motif DE_24h DE_24h-KLF12_MA0742.2 9 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 450 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 178 bp overlap
MYCN 1 dataset
ChIP SHEP-21N_DOX_24H GSE80151.MYCN.SHEP-21N_DOX_24H 190 bp overlap
MYOCD 1 dataset
ChIP A-549 GSE128921.MYOCD.A-549 275 bp overlap
Mecom 1 dataset
Motif ES_0h ES_0h-Mecom_MA0029.2 11 bp overlap
NANOG 2 datasets
ChIP WA01 ERP004238.NANOG.WA01 295 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 326 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 205 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 392 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 498 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 346 bp overlap
PATZ1 2 datasets
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
Motif DE_24h DE_24h-PATZ1_MA1961.2 11 bp overlap
PCGF2 2 datasets
ChIP HEK293T_PCGF2fl GSE119618.PCGF2.HEK293T_PCGF2fl 181 bp overlap
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 167 bp overlap
POLR2A 2 datasets
ChIP neural cell ENCFF604SPB 385 bp overlap
ChIP neural cell ENCFF604SPB 231 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 696 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 173 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 492 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 487 bp overlap
Prdm5 1 dataset
Motif ES_0h ES_0h-Prdm5_MA1999.2 11 bp overlap
RAD21 1 dataset
ChIP HCT-116 GSE131606.RAD21.HCT-116 600 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 177 bp overlap
REST 3 datasets
Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap
Motif DE_24h DE_24h-REST_MA0138.3 20 bp overlap
Motif ES_0h ES_0h-REST_MA0138.3 20 bp overlap
RFX2 1 dataset
Motif ES_0h ES_0h-RFX2_MA0600.3 14 bp overlap
RFX5 1 dataset
Motif ES_0h ES_0h-RFX5_MA0510.3 14 bp overlap
RING1 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.RING1.SYO-1_shRING1A-B 696 bp overlap
RNF2 11 datasets
ChIP H1 ENCFF239FFS 696 bp overlap
ChIP HEK293T_PCGF1352fl GSE119618.RNF2.HEK293T_PCGF1352fl 78 bp overlap
ChIP HEK293T_PCGF1356fl GSE119618.RNF2.HEK293T_PCGF1356fl 65 bp overlap
ChIP HEK293T_PCGF1356fl_OHT GSE119618.RNF2.HEK293T_PCGF1356fl_OHT 105 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.RNF2.HEK293T_PCGF135fl 97 bp overlap
ChIP HEK293T_PCGF135fl_OHT GSE119618.RNF2.HEK293T_PCGF135fl_OHT 64 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.RNF2.HEK293T_PCGF2fl 81 bp overlap
ChIP HEK293T_RING1Bfl GSE119618.RNF2.HEK293T_RING1Bfl 156 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 339 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 309 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 80 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 388 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 351 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 302 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 401 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 196 bp overlap
SMARCC1 3 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 696 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 191 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 696 bp overlap
SMC1 1 dataset
ChIP IMR-90_OIS GSE118494.SMC1.IMR-90_OIS 279 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 256 bp overlap
SP1 2 datasets
ChIP WA01 ENCSR000BIR.SP1.WA01 192 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 159 bp overlap
SP2 2 datasets
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
Motif DE_24h DE_24h-SP2_MA0516.3 9 bp overlap
SP3 2 datasets
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
Motif DE_24h DE_24h-SP3_MA0746.3 11 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 459 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 404 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 225 bp overlap
SUPT5H 1 dataset
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 189 bp overlap
SUZ12 18 datasets
ChIP GM12878 ENCFF498QAM 371 bp overlap
ChIP H1 ENCFF881NFR 696 bp overlap
ChIP HEK293T_PCGF1352fl GSE119618.SUZ12.HEK293T_PCGF1352fl 129 bp overlap
ChIP HEK293T_PCGF1352fl_OHT GSE119618.SUZ12.HEK293T_PCGF1352fl_OHT 150 bp overlap
ChIP HEK293T_PCGF1356fl GSE119618.SUZ12.HEK293T_PCGF1356fl 143 bp overlap
ChIP HEK293T_PCGF1356fl_OHT GSE119618.SUZ12.HEK293T_PCGF1356fl_OHT 172 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.SUZ12.HEK293T_PCGF135fl 205 bp overlap
ChIP HEK293T_PCGF135fl_OHT GSE119618.SUZ12.HEK293T_PCGF135fl_OHT 178 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.SUZ12.HEK293T_PCGF2fl 184 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.SUZ12.HEK293T_PCGF2fl_OHT 147 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 552 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 634 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 533 bp overlap
ChIP NT2/D1 ENCFF574SXS 461 bp overlap
ChIP NT2/D1 ENCFF574SXS 683 bp overlap
ChIP NT2/D1 ENCFF574SXS 464 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 236 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 237 bp overlap
TAF15 1 dataset
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 170 bp overlap
TARDBP 2 datasets
ChIP Hep-G2 ENCSR145CXH.TARDBP.Hep-G2 313 bp overlap
ChIP HepG2 ENCFF609NMG 392 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 254 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 696 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 352 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 116 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 403 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 421 bp overlap
ZBED4 2 datasets
Motif DE_12h DE_12h-ZBED4_MA2328.1 10 bp overlap
Motif DE_24h DE_24h-ZBED4_MA2328.1 10 bp overlap
ZBTB24 1 dataset
Motif ES_0h ES_0h-ZBTB24_MA2330.1 10 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 589 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 357 bp overlap
ZNF202 2 datasets
ChIP HEK293 ENCFF574FZA 341 bp overlap
ChIP HEK293 ENCSR996FYT.ZNF202.HEK293 456 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 82 bp overlap
ZNF677 1 dataset
Motif ES_0h ES_0h-ZNF677_MA2101.1 12 bp overlap
ZNF684 1 dataset
Motif ES_0h ES_0h-ZNF684_MA1600.2 14 bp overlap
ZNF692 1 dataset
Motif ES_0h ES_0h-ZNF692_MA1986.2 8 bp overlap
ZNF701 1 dataset
Motif ES_0h ES_0h-ZNF701_MA1987.2 17 bp overlap
ZNF708 2 datasets
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
Motif DE_24h DE_24h-ZNF708_MA1730.2 9 bp overlap