chr1 : 74,522,154 74,522,686
532 bp 122 TFs 0 linked genes
This 532 bp open chromatin element has no linked target genes and is bound by 122 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:74,517,154 – 74,527,686
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
122 transcription factors
Source
Cell type
ASCL1 5 datasets
Motif ES_0h ES_0h-ASCL1_MA1100.3 8 bp overlap
Motif ES_0h ES_0h-ASCL1_MA1631.2 9 bp overlap
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 151 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 109 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 183 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 494 bp overlap
Arid3a 2 datasets
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
Motif ES_0h ES_0h-Arid3a_MA0151.1 6 bp overlap
Ascl2 1 dataset
Motif ES_0h ES_0h-Ascl2_MA0816.1 10 bp overlap
BACH1 1 dataset
Motif DE_12h DE_12h-BACH1_MA1633.2 9 bp overlap
BACH2 1 dataset
Motif DE_12h DE_12h-BACH2_MA1101.3 11 bp overlap
BAP1 2 datasets
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 310 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 285 bp overlap
BRD4 6 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 310 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 286 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 285 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 532 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 211 bp overlap
ChIP hESC GSE33281.BRD4.hESC 63 bp overlap
CASZ1 2 datasets
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 288 bp overlap
ChIP rhabdomyosarcoma_Trametinib GSE126143.CASZ1.rhabdomyosarcoma_Trametinib 216 bp overlap
CHD2 1 dataset
ChIP WA01 ENCSR000EBT.CHD2.WA01 170 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 386 bp overlap
CRY1 2 datasets
ChIP U2OS GSE130602.CRY1.U2OS 251 bp overlap
ChIP U2OS_DMSO GSE130506.CRY1.U2OS_DMSO 250 bp overlap
CTCF 1 dataset
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 161 bp overlap
EHF 1 dataset
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
EP300 4 datasets
ChIP WA01 ENCSR000BKK.EP300.WA01 126 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 522 bp overlap
ChIP neural cell ENCFF442QNK 203 bp overlap
ChIP neural cell ENCFF442QNK 408 bp overlap
ESR1 1 dataset
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 188 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 151 bp overlap
Elf5 2 datasets
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
Motif ES_0h ES_0h-Elf5_MA0136.4 8 bp overlap
FOSL1 1 dataset
Motif DE_12h DE_12h-FOSL1_MA0477.3 9 bp overlap
FOSL2 2 datasets
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 324 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 242 bp overlap
FOXC1 1 dataset
Motif ES_0h ES_0h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif ES_0h ES_0h-FOXC2_MA0846.2 11 bp overlap
FOXD3 1 dataset
Motif ES_0h ES_0h-FOXD3_MA0041.3 14 bp overlap
FOXF2 1 dataset
Motif ES_0h ES_0h-FOXF2_MA0030.2 9 bp overlap
Foxj3 1 dataset
Motif ES_0h ES_0h-Foxj3_MA0851.2 9 bp overlap
GRHL2 1 dataset
ChIP PEO1 GSE71018.GRHL2.PEO1 178 bp overlap
Gfi1B 2 datasets
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
Motif ES_0h ES_0h-Gfi1B_MA0483.2 10 bp overlap
JDP2 1 dataset
Motif DE_12h DE_12h-JDP2_MA0655.1 9 bp overlap
JUNB 1 dataset
Motif DE_12h DE_12h-JUNB_MA0490.3 9 bp overlap
JUND 2 datasets
Motif DE_12h DE_12h-JUND_MA0491.3 9 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 171 bp overlap
Jun 1 dataset
Motif DE_12h DE_12h-Jun_MA0489.3 8 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 163 bp overlap
KLF9 2 datasets
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
ChIP GBM1A GSE62211.KLF9.GBM1A 199 bp overlap
MAX 1 dataset
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 166 bp overlap
MEIS2 1 dataset
Motif ES_0h ES_0h-MEIS2_MA1640.2 9 bp overlap
MYOD1 2 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 328 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 176 bp overlap
MYOG 1 dataset
Motif ES_0h ES_0h-MYOG_MA0500.3 8 bp overlap
NANOG 7 datasets
ChIP GM23338 ENCFF065NZG 302 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 124 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 417 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 335 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 199 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 423 bp overlap
NFE2 1 dataset
Motif DE_12h DE_12h-NFE2_MA0841.2 10 bp overlap
NHLH1 1 dataset
Motif ES_0h ES_0h-NHLH1_MA0048.3 9 bp overlap
NHLH2 1 dataset
Motif ES_0h ES_0h-NHLH2_MA1529.2 16 bp overlap
NR3C1 1 dataset
ChIP SUP-B15_DEX GSE107584.NR3C1.SUP-B15_DEX 473 bp overlap
Nfatc2 2 datasets
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
Motif ES_0h ES_0h-Nfatc2_MA0152.3 8 bp overlap
Olig2 1 dataset
Motif ES_0h ES_0h-Olig2_MA1997.2 6 bp overlap
PBX2 1 dataset
Motif ES_0h ES_0h-PBX2_MA1113.3 9 bp overlap
POLR2A 1 dataset
ChIP GM23338 ENCFF450WCS 491 bp overlap
POU1F1 1 dataset
Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap
POU2F2 1 dataset
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU2F3 2 datasets
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 194 bp overlap
POU3F1 1 dataset
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU4F1 2 datasets
Motif DE_12h DE_12h-POU4F1_MA0790.2 12 bp overlap
Motif ES_0h ES_0h-POU4F1_MA0790.2 12 bp overlap
POU4F2 3 datasets
Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap
Motif ES_0h ES_0h-POU4F2_MA0683.2 15 bp overlap
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 135 bp overlap
POU4F3 2 datasets
Motif DE_12h DE_12h-POU4F3_MA0791.2 12 bp overlap
Motif ES_0h ES_0h-POU4F3_MA0791.2 12 bp overlap
POU5F1 7 datasets
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 494 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 178 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 426 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 403 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 165 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR362VCG.POU5F1.neuron_bipolar_doxy_4d 103 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 416 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 435 bp overlap
RBPJ 2 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
RELB 1 dataset
Motif DE_12h DE_12h-RELB_MA1117.2 7 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 284 bp overlap
ChIP neural cell ENCFF882LXX 457 bp overlap
RFX2 2 datasets
Motif DE_12h DE_12h-RFX2_MA0600.3 14 bp overlap
Motif ES_0h ES_0h-RFX2_MA0600.3 14 bp overlap
RFX3 2 datasets
Motif DE_12h DE_12h-RFX3_MA0798.3 16 bp overlap
Motif ES_0h ES_0h-RFX3_MA0798.3 16 bp overlap
RFX5 2 datasets
Motif DE_12h DE_12h-RFX5_MA0510.3 14 bp overlap
Motif ES_0h ES_0h-RFX5_MA0510.3 14 bp overlap
RREB1 1 dataset
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
RUVBL2 1 dataset
ChIP U2OS GSE130602.RUVBL2.U2OS 372 bp overlap
SIX1 2 datasets
Motif DE_12h DE_12h-SIX1_MA1118.2 9 bp overlap
Motif ES_0h ES_0h-SIX1_MA1118.2 9 bp overlap
SIX2 5 datasets
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
Motif ES_0h ES_0h-SIX2_MA1119.2 11 bp overlap
ChIP HEK GSE73865.SIX2.HEK 381 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 315 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 301 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 142 bp overlap
ChIP PC-3_hypoxia GSE106305.SMAD3.PC-3_hypoxia 257 bp overlap
SMARCA2 1 dataset
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 275 bp overlap
SMARCA4 7 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 404 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 427 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 505 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 532 bp overlap
ChIP TTC-1240_empty GSE124903.SMARCA4.TTC-1240_empty 517 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 470 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 399 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 322 bp overlap
SMARCC1 7 datasets
ChIP TTC-1240 GSE124903.SMARCC1.TTC-1240 64 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 328 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCC1.TTC-1240_SMARCB1-FL 530 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 532 bp overlap
ChIP TTC-1240_empty GSE124903.SMARCC1.TTC-1240_empty 532 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 157 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 409 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 273 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 271 bp overlap
SPIB 2 datasets
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
Motif ES_0h ES_0h-SPIB_MA0081.3 13 bp overlap
STAT1 2 datasets
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
Motif ES_0h ES_0h-STAT1_MA0137.4 9 bp overlap
STAT3 2 datasets
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
Motif ES_0h ES_0h-STAT3_MA0144.3 9 bp overlap
Smad4 2 datasets
Motif DE_12h DE_12h-Smad4_MA1153.2 7 bp overlap
Motif ES_0h ES_0h-Smad4_MA1153.2 7 bp overlap
Stat4 2 datasets
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
Motif ES_0h ES_0h-Stat4_MA0518.2 10 bp overlap
TBP 3 datasets
ChIP hESC GSE122298.TBP.hESC 192 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 163 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 123 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 147 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 256 bp overlap
TEAD3 2 datasets
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
Motif ES_0h ES_0h-TEAD3_MA0808.1 8 bp overlap
TEAD4 3 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 315 bp overlap
ChIP H1 ENCFF778PAX 150 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 248 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 240 bp overlap
Tcf12 1 dataset
Motif ES_0h ES_0h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif ES_0h ES_0h-Twist2_MA0633.3 6 bp overlap
ZBTB11 1 dataset
Motif DE_12h DE_12h-ZBTB11_MA2329.1 9 bp overlap
ZBTB26 1 dataset
Motif DE_12h DE_12h-ZBTB26_MA1579.2 8 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 155 bp overlap
ZFP57 1 dataset
Motif ES_0h ES_0h-ZFP57_MA1583.2 7 bp overlap
ZNF157 2 datasets
Motif DE_12h DE_12h-ZNF157_MA2331.1 21 bp overlap
Motif ES_0h ES_0h-ZNF157_MA2331.1 21 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 178 bp overlap
ZNF558 2 datasets
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
Motif ES_0h ES_0h-ZNF558_MA2335.1 29 bp overlap
ZNF816 2 datasets
Motif DE_12h DE_12h-ZNF816_MA1719.2 15 bp overlap
Motif ES_0h ES_0h-ZNF816_MA1719.2 15 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 184 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 363 bp overlap