chr3:129,344,512–129,344,822

chr3 : 129,344,512 – 129,344,822

310 bp 58 TFs 12 linked genes

This 310 bp open chromatin element is linked to 12 target genes and is bound by 58 transcription factors.

Linked Genes

12 genes

Gene	Expression	Dist. to TSS	Distance	Link type
H1-10		28.4 kb	Distal	Multiome
H1-10-AS1		29.3 kb	Distal	Multiome
ENSG00000290993		54.7 kb	Distal	Multiome
HMCES		65.8 kb	Distal	Multiome
COPG1		95.1 kb	Distal	Multiome
MBD4		95.3 kb	Distal	Multiome
IFT122		95.5 kb	Distal	Multiome
ENSG00000289469		160.6 kb	Distal	Multiome
CNBP		160.7 kb	Distal	Multiome
ISY1		183.6 kb	Distal	Multiome
RAB43		222.5 kb	Distal	Multiome
PLXND1		262.0 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

58 transcription factors

ARID1A 1 dataset

ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 149 bp overlap

ASH2L 1 dataset

ChIP WA01 ENCSR850KIP.ASH2L.WA01 69 bp overlap

ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 78 bp overlap

ChIP T-47D ERP003925.BRD4.T-47D 158 bp overlap

CAMTA2 1 dataset

ChIP HepG2 ENCFF305ZLM 232 bp overlap

CTCF 47 datasets

ChIP B cell ENCFF500PZO 108 bp overlap

ChIP D54 ENCSR000DKN.CTCF.D54 177 bp overlap

ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 174 bp overlap

ChIP GM23338 ENCFF772DML 201 bp overlap

ChIP H1 ENCFF230QSV 165 bp overlap

ChIP H1 ENCFF414GZI 217 bp overlap

ChIP H54 ENCFF255TVO 225 bp overlap

ChIP HCT116 ENCFF209YMI 238 bp overlap

ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 99 bp overlap

ChIP HepG2 ENCFF348BUL 197 bp overlap

ChIP HepG2 ENCFF757EKU 282 bp overlap

ChIP K-562 ENCSR000DWE.CTCF.K-562 119 bp overlap

ChIP K-562 ENCSR000AKO.CTCF.K-562 152 bp overlap

ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 255 bp overlap

ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 232 bp overlap

ChIP K562 ENCFF400DFR 241 bp overlap

ChIP K562 ENCFF598YSU 265 bp overlap

ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 259 bp overlap

ChIP KMS-11 ENCFF853JKX 145 bp overlap

ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 148 bp overlap

ChIP Loucy ENCFF359TVQ 310 bp overlap

ChIP MCF-7 ENCFF414SZG 191 bp overlap

ChIP MCF-7 ENCFF424NQR 191 bp overlap

ChIP MCF-7 ENCFF844STM 191 bp overlap

ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 235 bp overlap

ChIP MM1-S GSE43743.CTCF.MM1-S 306 bp overlap

ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 250 bp overlap

ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 284 bp overlap

ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 236 bp overlap

ChIP Panc1 ENCFF056JQX 65 bp overlap

ChIP SU-DHL-6 ENCFF116KKR 72 bp overlap

ChIP WA01 ENCSR000DLK.CTCF.WA01 91 bp overlap

ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 183 bp overlap

ChIP WERI-Rb-1 ENCFF349QKF 231 bp overlap

ChIP cardiac_muscle ENCSR000DTI.CTCF.cardiac_muscle 196 bp overlap

ChIP delta-47 GSE70764.CTCF.delta-47 214 bp overlap

ChIP dorsolateral prefrontal cortex ENCFF267VHH 74 bp overlap

ChIP endothelial_umbilical-vein ENCSR000DVP.CTCF.endothelial_umbilical-vein 117 bp overlap

ChIP epithelial cell of prostate ENCFF086GTI 141 bp overlap

ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 179 bp overlap

ChIP glutamatergic neuron ENCFF816BTR 139 bp overlap

ChIP hESC_D15 GSE116862.CTCF.hESC_D15 250 bp overlap

ChIP hESC_D2 GSE116862.CTCF.hESC_D2 215 bp overlap

ChIP hESC_D5 GSE116862.CTCF.hESC_D5 248 bp overlap

ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 96 bp overlap

ChIP parathyroid adenoma ENCFF173NJK 310 bp overlap

ChIP retinal pigment epithelial cell ENCFF810AAG 235 bp overlap

CTCFL 1 dataset

ChIP OVCAR-8 GSE70764.CTCFL.OVCAR-8 195 bp overlap

ESR1 11 datasets

ChIP MCF-7 GSE48930.ESR1.MCF-7 155 bp overlap

ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 216 bp overlap

ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 110 bp overlap

ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 174 bp overlap

ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 141 bp overlap

ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 58 bp overlap

ChIP MCF-7_estradiol-Dex_4h GSE99626.ESR1.MCF-7_estradiol-Dex_4h 153 bp overlap

ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 306 bp overlap

ChIP MCF-7_jc5853 GSE126004.ESR1.MCF-7_jc5853 174 bp overlap

ChIP MCF-7_jc5854 GSE126004.ESR1.MCF-7_jc5854 155 bp overlap

ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 145 bp overlap

EZH2 4 datasets

ChIP Karpas-422_CPI360-D8 GSE134136.EZH2.Karpas-422_CPI360-D8 110 bp overlap

ChIP WA01 ENCSR000ASY.EZH2.WA01 128 bp overlap

ChIP fibroblast of dermis ENCFF029VZK 103 bp overlap

ChIP fibroblast of dermis ENCFF029VZK 310 bp overlap

FOXP1 2 datasets

ChIP WTC11 ENCFF338WGC 66 bp overlap

ChIP WTC11 ENCFF338WGC 310 bp overlap

GABPB1 1 dataset

ChIP HepG2 ENCFF315AWN 70 bp overlap

GATA2 5 datasets

ChIP ESF GSE108408.GATA2.ESF 103 bp overlap

ChIP SH-SY5Y ENCFF485YIB 145 bp overlap

ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 109 bp overlap

ChIP primary-endometrial-stromal-cell_IVD_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P1 75 bp overlap

ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 142 bp overlap

GATA3 4 datasets

ChIP MCF-7 ENCFF178GBS 269 bp overlap

ChIP MCF-7 ENCFF352QVM 80 bp overlap

ChIP MCF-7 ENCFF437NQS 136 bp overlap

ChIP MCF-7 GSE51274.GATA3.MCF-7 146 bp overlap

GATA3_Nter 1 dataset

ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 86 bp overlap

GATA6 2 datasets

ChIP DE_D1 S41-DE-d1-GATA6-exp2 73 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 105 bp overlap

GLIS3 1 dataset

ChIP H9_plus GSE109562.GLIS3.H9_plus 310 bp overlap

HMGXB4 1 dataset

ChIP HepG2 ENCFF032DND 166 bp overlap

HNRNPL 1 dataset

ChIP HepG2 ENCFF671UYF 310 bp overlap

HNRNPLL 1 dataset

ChIP HepG2 ENCFF355PIC 117 bp overlap

IKZF1 1 dataset

ChIP K562 ENCFF348IBL 153 bp overlap

ChIP HepG2 ENCFF654ZCV 68 bp overlap

ChIP ESC S34-ESC-d0-JUN-exp2 296 bp overlap

KDM4A 1 dataset

ChIP WA01 ENCSR000AVC.KDM4A.WA01 88 bp overlap

ChIP HepG2 ENCFF507HCX 67 bp overlap

ChIP WTC11 ENCFF223QFY 279 bp overlap

ChIP IMR-90 ENCSR000EFF.MAZ.IMR-90 98 bp overlap

ChIP K-562 ENCSR163IUV.MAZ.K-562 124 bp overlap

ChIP K-562 ENCSR000EFX.MAZ.K-562 172 bp overlap

ChIP K562 ENCFF809XHP 310 bp overlap

ChIP MCF-7 ENCFF913ACQ 209 bp overlap

ChIP MCF-7 ENCSR940MHE.MBD2.MCF-7 86 bp overlap

ChIP melanocyte_BRAFV600E GSE50681.MITF.melanocyte_BRAFV600E 210 bp overlap

ChIP HepG2 ENCFF575FXK 70 bp overlap

ChIP MCF-7 ENCFF542NWJ 190 bp overlap

NR3C1 1 dataset

ChIP MCF-7 GSE152203.NR3C1.MCF-7 53 bp overlap

PATZ1 1 dataset

ChIP HepG2 ENCFF723PFC 140 bp overlap

ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 113 bp overlap

ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 114 bp overlap

PHF8 2 datasets

ChIP K562 ENCFF217UCA 74 bp overlap

ChIP K562 ENCFF217UCA 275 bp overlap

POU5F1 2 datasets

ChIP BG03 GSE21614.POU5F1.BG03 181 bp overlap

ChIP DE_D1 DED1-OCT4_Batch_II 268 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 310 bp overlap

RBBP5 1 dataset

ChIP WA01 ENCSR000AQC.RBBP5.WA01 80 bp overlap

RBM39 1 dataset

ChIP HepG2 ENCFF801JUH 310 bp overlap

RUNX2 1 dataset

ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 157 bp overlap

SAP30 3 datasets

ChIP H1 ENCFF149IOE 233 bp overlap

ChIP H1 ENCFF149IOE 310 bp overlap

ChIP WA01 ENCSR000ATR.SAP30.WA01 226 bp overlap

ChIP HepG2 ENCFF823HPQ 205 bp overlap

SMARCA4 1 dataset

ChIP MCF-7 GSE140185.SMARCA4.MCF-7 151 bp overlap

ChIP HepG2 ENCFF767OCK 112 bp overlap

ChIP H1 ENCFF263FUH 235 bp overlap

ChIP HEK293 GSE76494.SP1.HEK293 189 bp overlap

ChIP WA01 ENCSR000BIR.SP1.WA01 177 bp overlap

ChIP WTC11 ENCFF688PEU 104 bp overlap

ChIP WTC11 ENCFF688PEU 310 bp overlap

SUZ12 1 dataset

ChIP Karpas-422_CPI360-D8 GSE134136.SUZ12.Karpas-422_CPI360-D8 104 bp overlap

ChIP HepG2 ENCFF961AVP 96 bp overlap

ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 112 bp overlap

TEAD4 1 dataset

ChIP H1 ENCFF778PAX 160 bp overlap

TFAP2B 1 dataset

ChIP SK-N-SH ENCFF869XXQ 135 bp overlap

TFAP2C 2 datasets

ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 223 bp overlap

ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 269 bp overlap

YEATS4 1 dataset

ChIP HepG2 ENCFF340OIC 156 bp overlap

YY1AP1 1 dataset

ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 295 bp overlap

ZFP91 1 dataset

ChIP HepG2 ENCFF012CME 206 bp overlap

ZGPAT 1 dataset

ChIP HepG2 ENCFF055YSO 80 bp overlap

ZNF143 3 datasets

ChIP MCF-7 GSE76454.ZNF143.MCF-7 245 bp overlap

ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 202 bp overlap

ChIP WA01 ENCSR000EBW.ZNF143.WA01 112 bp overlap

ZNF148 1 dataset

ChIP K-562 ENCSR018MSO.ZNF148.K-562 173 bp overlap

ZNF263 4 datasets

ChIP Hep-G2 ENCSR313MMD.ZNF263.Hep-G2 154 bp overlap

ChIP HepG2 ENCFF626SSV 139 bp overlap

ChIP K-562 ENCSR000EWN.ZNF263.K-562 242 bp overlap

ChIP WTC11 ENCFF893RTM 310 bp overlap

ZNF574 1 dataset

ChIP HepG2 ENCFF206MMY 50 bp overlap

ZNF687 1 dataset

ChIP HepG2 ENCFF653WIX 310 bp overlap

ZNF770 1 dataset

ChIP HepG2 ENCFF233UVH 310 bp overlap