chr3 : 119,176,650 119,176,873
223 bp 84 TFs 1 linked gene
This 223 bp open chromatin element is linked to UPK1B and is bound by 84 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
UPK1B 3.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:119,171,650 – 119,181,873
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
84 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP RMG-I GSE120058.ARID1A.RMG-I 119 bp overlap
BCL3 1 dataset
ChIP A-549 ENCSR000BQH.BCL3.A-549 94 bp overlap
BRD2 4 datasets
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 140 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 223 bp overlap
ChIP SUM149PT_R_DMSO GSE131097.BRD2.SUM149PT_R_DMSO 125 bp overlap
ChIP SUM159PT_JQ1_MGSK2801 GSE116879.BRD2.SUM159PT_JQ1_MGSK2801 63 bp overlap
BRD4 14 datasets
ChIP HCC1937 GSE124748.BRD4.HCC1937 223 bp overlap
ChIP HeLa GSE151038.BRD4.HeLa 136 bp overlap
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 162 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 77 bp overlap
ChIP SUM149PT_DMSO GSE131097.BRD4.SUM149PT_DMSO 136 bp overlap
ChIP SUM149_DMSO GSE63581.BRD4.SUM149_DMSO 199 bp overlap
ChIP SUM159PT_100nMtrametinib300nMJQ1_24h GSE87418.BRD4.SUM159PT_100nMtrametinib300nMJQ1_24h 60 bp overlap
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 79 bp overlap
ChIP SUM159PT_100nMtrametinib_4h GSE87418.BRD4.SUM159PT_100nMtrametinib_4h 186 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 103 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 79 bp overlap
ChIP SUM229PE_neg_DMSO_24h GSE87418.BRD4.SUM229PE_neg_DMSO_24h 82 bp overlap
ChIP SUM229PE_pos_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_pos_30nMtrametinib_24h 160 bp overlap
ChIP SUM229PE_pos_DMSO_24h GSE87418.BRD4.SUM229PE_pos_DMSO_24h 223 bp overlap
CEBPA 6 datasets
ChIP MV4-11 GSE88746.CEBPA.MV4-11 113 bp overlap
ChIP THP-1_1-25D_24h GSE124032.CEBPA.THP-1_1-25D_24h 64 bp overlap
ChIP THP-1_1-25D_2h GSE124032.CEBPA.THP-1_1-25D_2h 223 bp overlap
ChIP THP-1_1-25D_8h GSE124032.CEBPA.THP-1_1-25D_8h 92 bp overlap
ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 127 bp overlap
ChIP THP-1_EtOH_2h GSE124032.CEBPA.THP-1_EtOH_2h 119 bp overlap
CEBPB 4 datasets
ChIP A-549 ENCSR000BUB.CEBPB.A-549 187 bp overlap
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 223 bp overlap
ChIP MV4-11 GSE88746.CEBPB.MV4-11 98 bp overlap
ChIP THP-1_NS1-Pam3csk-4h GSE103477.CEBPB.THP-1_NS1-Pam3csk-4h 53 bp overlap
CEBPG 1 dataset
ChIP MCF-7 ENCFF155HZI 140 bp overlap
CREB1 2 datasets
ChIP A-549 ENCSR000BRC.CREB1.A-549 134 bp overlap
ChIP A-549 ENCSR000BRB.CREB1.A-549 102 bp overlap
CREBBP 4 datasets
ChIP MCF-7 ERP000901.CREBBP.MCF-7 65 bp overlap
ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 117 bp overlap
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 210 bp overlap
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 96 bp overlap
CTCF 13 datasets
ChIP A-549 ENCSR000AUF.CTCF.A-549 223 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 129 bp overlap
ChIP A-549 ENCSR000DNA.CTCF.A-549 118 bp overlap
ChIP A549 ENCFF034FVO 193 bp overlap
ChIP A549 ENCFF182TCQ 147 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 97 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 97 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 99 bp overlap
ChIP HeLa-S3 ENCFF565UFR 77 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 79 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 118 bp overlap
ChIP RWPE2 ENCFF911IEE 223 bp overlap
ChIP THP-1_siWAPL-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siWAPL-NS1-Pam3csk-7h-Flavo-3h 221 bp overlap
CTCFL 1 dataset
ChIP FT282 GSE131931.CTCFL.FT282 105 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 93 bp overlap
ELF3 2 datasets
ChIP PDAC GSE64557.ELF3.PDAC 223 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 57 bp overlap
EP300 6 datasets
ChIP A-549 ENCSR000BPW.EP300.A-549 223 bp overlap
ChIP A549 ENCFF476KCM 93 bp overlap
ChIP A549 ENCFF960ZEI 137 bp overlap
ChIP HeLa-S3 ENCFF089VPQ 117 bp overlap
ChIP PC-3 GSE147455.EP300.PC-3 223 bp overlap
ChIP tibial nerve ENCFF346AYA 145 bp overlap
ESR1 3 datasets
ChIP MCF-7_E2-320min-ERalpha GSE94023.ESR1.MCF-7_E2-320min-ERalpha 52 bp overlap
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 141 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 69 bp overlap
FOSB 2 datasets
ChIP A-549 ENCSR918GHT.FOSB.A-549 65 bp overlap
ChIP A549 ENCFF029EEU 61 bp overlap
FOSL2 3 datasets
ChIP A-549 ENCSR000BQO.FOSL2.A-549 165 bp overlap
ChIP A-549 ENCSR448TVS.FOSL2.A-549 164 bp overlap
ChIP A549 ENCFF195CES 53 bp overlap
FOXA1 7 datasets
ChIP A-549 ENCSR000BPX.FOXA1.A-549 89 bp overlap
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 139 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 163 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 182 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 112 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 223 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 217 bp overlap
FOXA2 5 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 80 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 189 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 104 bp overlap
ChIP DE DE-FOXA2-1 148 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 106 bp overlap
GATA3 2 datasets
ChIP A-549 ENCSR000BTI.GATA3.A-549 101 bp overlap
ChIP A549 ENCFF226FVV 114 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 223 bp overlap
ChIP DE DE-GATA4-2 223 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 188 bp overlap
ChIP DE DE-GATA6-2 223 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 223 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 66 bp overlap
GTF2B 1 dataset
ChIP HeLa_ASYNC GSE71848.GTF2B.HeLa_ASYNC 105 bp overlap
HDAC2 1 dataset
ChIP PC-3 GSE147455.HDAC2.PC-3 59 bp overlap
HEYL 1 dataset
ChIP A549 ENCFF588UHP 223 bp overlap
HNF4A 1 dataset
ChIP IM95 GSE114018.HNF4A.IM95 174 bp overlap
HOXA7 1 dataset
ChIP A549 ENCFF746ZBJ 68 bp overlap
HOXB13 2 datasets
ChIP A549 ENCFF870NOA 223 bp overlap
ChIP A549 ENCFF870NOA 77 bp overlap
HOXB5 1 dataset
ChIP A-549 ENCSR748HJZ.HOXB5.A-549 207 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 132 bp overlap
HSF1 1 dataset
ChIP NCI-H838 GSE38901.HSF1.NCI-H838 223 bp overlap
JUN 5 datasets
ChIP A549 ENCFF191QZG 198 bp overlap
ChIP A549 ENCFF191QZG 223 bp overlap
ChIP A549 ENCFF846DUV 223 bp overlap
ChIP HeLa-S3 ENCFF668QVP 108 bp overlap
ChIP MCF-7_TamR GSE128445.JUN.MCF-7_TamR 87 bp overlap
JUNB 3 datasets
ChIP A549 ENCFF251BPG 105 bp overlap
ChIP A549 ENCFF251BPG 223 bp overlap
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 107 bp overlap
JUND 1 dataset
ChIP A-549 ENCSR000BRF.JUND.A-549 91 bp overlap
KDM1A 1 dataset
ChIP keratinocyte_diff GSE57702.KDM1A.keratinocyte_diff 123 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 209 bp overlap
KLF4 3 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 209 bp overlap
ChIP HAP1 GSE130417.KLF4.HAP1 76 bp overlap
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 94 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 223 bp overlap
MAX 3 datasets
ChIP A-549 ENCSR000BTJ.MAX.A-549 198 bp overlap
ChIP A549 ENCFF310XGQ 193 bp overlap
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 95 bp overlap
MED1 5 datasets
ChIP A-549 GSE76893.MED1.A-549 74 bp overlap
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 191 bp overlap
ChIP hMSC-TERT4_D7 GSE104537.MED1.hMSC-TERT4_D7 55 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 168 bp overlap
ChIP hMSC-TERT4_osteoblast-D1 GSE113253.MED1.hMSC-TERT4_osteoblast-D1 139 bp overlap
MGA 2 datasets
ChIP A-549 GSE112188.MGA.A-549 51 bp overlap
ChIP A-549_MGA-OE GSE112188.MGA.A-549_MGA-OE 142 bp overlap
MYC 1 dataset
ChIP A549 ENCFF722CWN 159 bp overlap
NFE2L2 1 dataset
ChIP A-549 GSE113497.NFE2L2.A-549 141 bp overlap
NR2E3 1 dataset
ChIP A549 ENCFF833WDR 70 bp overlap
NR3C1 6 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 95 bp overlap
ChIP A-549 ENCSR000BHG.NR3C1.A-549 84 bp overlap
ChIP A-549 ENCSR000BJR.NR3C1.A-549 90 bp overlap
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 122 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 138 bp overlap
ChIP HCC1937 GSE152203.NR3C1.HCC1937 79 bp overlap
NR5A2 1 dataset
ChIP A-549 ENCSR190GIW.NR5A2.A-549 223 bp overlap
PBX1 1 dataset
ChIP A-549 ENCSR637RKG.PBX1.A-549 107 bp overlap
PGR 1 dataset
ChIP AB32 GSE31129.PGR.AB32 169 bp overlap
POLR2A 1 dataset
ChIP A549 ENCFF748RAW 176 bp overlap
POU5F1 1 dataset
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 69 bp overlap
PRDM10 2 datasets
ChIP K-562 ENCSR120MPG.PRDM10.K-562 119 bp overlap
ChIP K562 ENCFF740YLK 203 bp overlap
RAD21 2 datasets
ChIP A-549 ENCSR000BUC.RAD21.A-549 82 bp overlap
ChIP A549 ENCFF264AHX 207 bp overlap
RBPJ 2 datasets
ChIP SCC_0h GSE156486.RBPJ.SCC_0h 104 bp overlap
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 223 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 160 bp overlap
RELA 5 datasets
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 62 bp overlap
ChIP HeLa-B2_TA_TNFA GSE24518.RELA.HeLa-B2_TA_TNFA 58 bp overlap
ChIP HeLa-B2_TNFA GSE24518.RELA.HeLa-B2_TNFA 76 bp overlap
ChIP KB_IL GSE52469.RELA.KB_IL 77 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 114 bp overlap
REST 1 dataset
ChIP A-549 ENCSR000BQP.REST.A-549 173 bp overlap
RFX5 1 dataset
ChIP HeLa-S3 ENCFF703XPB 118 bp overlap
SIN3A 3 datasets
ChIP A-549 ENCSR000BRM.SIN3A.A-549 149 bp overlap
ChIP A549 ENCFF752ATT 223 bp overlap
ChIP A549 ENCFF752ATT 223 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 72 bp overlap
SMARCA4 7 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 65 bp overlap
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 223 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 223 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 117 bp overlap
ChIP A-549_AG15723 GSE132290.SMARCA4.A-549_AG15723 63 bp overlap
ChIP A-549_AG15724 GSE132290.SMARCA4.A-549_AG15724 82 bp overlap
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 110 bp overlap
SMARCB1 1 dataset
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 140 bp overlap
SMARCC1 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 98 bp overlap
SMC1A 1 dataset
ChIP A-549 GSE76893.SMC1A.A-549 57 bp overlap
SMC3 5 datasets
ChIP A549 ENCFF079FKB 163 bp overlap
ChIP A549 ENCFF079FKB 223 bp overlap
ChIP HeLa GSE126990.SMC3.HeLa 164 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 164 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 164 bp overlap
SNAI2 1 dataset
ChIP PC-9_2DF GSE131687.SNAI2.PC-9_2DF 223 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 184 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 223 bp overlap
SOX4 1 dataset
ChIP MRC-5_1DPT GSE75910.SOX4.MRC-5_1DPT 108 bp overlap
SP1 1 dataset
ChIP A-549 ENCSR000BPE.SP1.A-549 223 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 65 bp overlap
STAT3 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 82 bp overlap
TBP 1 dataset
ChIP HeLa-S3 ENCSR000EDD.TBP.HeLa-S3 54 bp overlap
TCF12 1 dataset
ChIP A-549 ENCSR000BQQ.TCF12.A-549 202 bp overlap
TEAD1 1 dataset
ChIP adipocyte GSE140782.TEAD1.adipocyte 175 bp overlap
TEAD4 6 datasets
ChIP A549 ENCFF243FTL 52 bp overlap
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 223 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.TEAD4.PC-9_1DF_DMSO 113 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 180 bp overlap
ChIP PC-9_2DF_DMSO GSE131687.TEAD4.PC-9_2DF_DMSO 131 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 122 bp overlap
UBN1 1 dataset
ChIP HeLa GSE45024.UBN1.HeLa 162 bp overlap
VDR 1 dataset
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 146 bp overlap
YY1 1 dataset
ChIP A-549 ENCSR000BPM.YY1.A-549 150 bp overlap
YY1AP1 4 datasets
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 203 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.YY1AP1.PC-9_1DF_DMSO 144 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 119 bp overlap
ChIP PC-9_2DF_DMSO GSE131687.YY1AP1.PC-9_2DF_DMSO 155 bp overlap
ZEB1 1 dataset
ChIP PDAC GSE64557.ZEB1.PDAC 223 bp overlap
ZNF624 2 datasets
ChIP A-549 ENCSR419VVI.ZNF624.A-549 216 bp overlap
ChIP A549 ENCFF802OXN 223 bp overlap