chr1 : 59,673,290 59,673,593
303 bp 76 TFs 0 linked genes
This 303 bp open chromatin element has no linked target genes and is bound by 76 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:59,668,290 – 59,678,593
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
76 transcription factors
Source
Cell type
AR 4 datasets
ChIP DU145 GSE47987.AR.DU145 222 bp overlap
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 241 bp overlap
ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 303 bp overlap
ChIP prostate_DHT GSE61838.AR.prostate_DHT 122 bp overlap
ATF3 1 dataset
ChIP K562 ENCFF921JQW 87 bp overlap
BORCS8-MEF2B,MEF2B 2 datasets
ChIP GM12878 ENCFF427QAI 303 bp overlap
ChIP GM12878 ENCFF427QAI 145 bp overlap
BRCA1 1 dataset
ChIP MCF-10A GSE40591.BRCA1.MCF-10A 189 bp overlap
BRD2 4 datasets
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 105 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD2.MDA-MB-231_DMSO 86 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD2.MDA-MB-231_DMSO_rDNA 86 bp overlap
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 149 bp overlap
BRD4 13 datasets
ChIP 402-91 GSE111253.BRD4.402-91 200 bp overlap
ChIP HCC1395 GSE63581.BRD4.HCC1395 86 bp overlap
ChIP HCC1806_100nMtrametinib_24h GSE87418.BRD4.HCC1806_100nMtrametinib_24h 262 bp overlap
ChIP HCC1937 GSE124748.BRD4.HCC1937 303 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 102 bp overlap
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.BRD4.Hs-352-Sk_PAX3-FOXO1-vector 213 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 168 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 168 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 292 bp overlap
ChIP OCI-AML3 GSE104745.BRD4.OCI-AML3 240 bp overlap
ChIP SUM149_DMSO GSE63581.BRD4.SUM149_DMSO 303 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 168 bp overlap
ChIP SUM229PE_pos_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_pos_30nMtrametinib_24h 303 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 303 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 204 bp overlap
CBX3 1 dataset
ChIP HCT116 ENCFF947BOL 199 bp overlap
CDKN1B 2 datasets
ChIP MDA-MB-231 GSE112444.CDKN1B.MDA-MB-231 255 bp overlap
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 303 bp overlap
CREBBP 2 datasets
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 303 bp overlap
ChIP monocyte_IFNg-LPS GSE131294.CREBBP.monocyte_IFNg-LPS 145 bp overlap
CTCF 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 188 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 147 bp overlap
EBF1 3 datasets
ChIP GM12878 ENCFF167CZS 217 bp overlap
ChIP GM12878 ENCFF813OXE 197 bp overlap
ChIP GM12878 ENCSR000DZQ.EBF1.GM12878 123 bp overlap
EHF 1 dataset
ChIP primary-bronchial-epithelial GSE85401.EHF.primary-bronchial-epithelial 143 bp overlap
EP300 2 datasets
ChIP PC-3 GSE147455.EP300.PC-3 138 bp overlap
ChIP tibial nerve ENCFF346AYA 296 bp overlap
ERG 2 datasets
ChIP ME-1 GSE46044.ERG.ME-1 265 bp overlap
ChIP RWPE-1 GSE114241.ERG.RWPE-1 136 bp overlap
ESR1 2 datasets
ChIP T-47D_PROG GSE68355.ESR1.T-47D_PROG 233 bp overlap
ChIP T-47D_R5020 GSE68355.ESR1.T-47D_R5020 190 bp overlap
ETS1 2 datasets
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 54 bp overlap
ChIP SCC-25 GSE109884.ETS1.SCC-25 303 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 280 bp overlap
FOS 2 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 100 bp overlap
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 303 bp overlap
FOSL1 2 datasets
ChIP BT-549 GSE112961.FOSL1.BT-549 289 bp overlap
ChIP BT-549 GSE46166.FOSL1.BT-549 203 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 250 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 103 bp overlap
GATA6 6 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 146 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 303 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 303 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 303 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 303 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 133 bp overlap
HIF1A 1 dataset
ChIP PC-3_hypoxia_siCtrl GSE106305.HIF1A.PC-3_hypoxia_siCtrl 157 bp overlap
IKZF1 1 dataset
ChIP GM12878 ENCFF753XDO 303 bp overlap
JMJD1C 2 datasets
ChIP HL-60 GSE63484.JMJD1C.HL-60 201 bp overlap
ChIP THP-1 GSE63484.JMJD1C.THP-1 134 bp overlap
JUN 9 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 303 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 52 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 233 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 300 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 303 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 303 bp overlap
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 303 bp overlap
ChIP MDA-BoM-1833_shp27 GSE112444.JUN.MDA-BoM-1833_shp27 184 bp overlap
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 247 bp overlap
JUNB 2 datasets
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 98 bp overlap
ChIP Karpas-299 GSE151413.JUNB.Karpas-299 285 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 100 bp overlap
KDM1A 2 datasets
ChIP Kasumi-1_GSK690 GSE71739.KDM1A.Kasumi-1_GSK690 180 bp overlap
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 249 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 303 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 117 bp overlap
MAX 1 dataset
ChIP MDA-MB-231 GSE127192.MAX.MDA-MB-231 156 bp overlap
MED1 4 datasets
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 209 bp overlap
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 50 bp overlap
ChIP MDA-MB-231_LQ GSE95121.MED1.MDA-MB-231_LQ 303 bp overlap
ChIP RH4 GSE83726.MED1.RH4 82 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 56 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 184 bp overlap
MYCN 2 datasets
ChIP SH-EP_MYCNER_plusOHT GSE111905.MYCN.SH-EP_MYCNER_plusOHT 141 bp overlap
ChIP SH-EP_pRRL-MYCN GSE111905.MYCN.SH-EP_pRRL-MYCN 209 bp overlap
NANOG 1 dataset
ChIP WA09 GSE105028.NANOG.WA09 142 bp overlap
NFE2L2 1 dataset
ChIP BEAS-2B GSE145834.NFE2L2.BEAS-2B 177 bp overlap
NFKB1 3 datasets
ChIP HEK293T GSE129618.NFKB1.HEK293T 243 bp overlap
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 191 bp overlap
ChIP L1236 GSE63736.NFKB1.L1236 161 bp overlap
NFKB2 1 dataset
ChIP L1236 GSE63736.NFKB2.L1236 102 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 303 bp overlap
NR3C1 2 datasets
ChIP MCF-10A_EGF_DEX_20min GSE102355.NR3C1.MCF-10A_EGF_DEX_20min 210 bp overlap
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 125 bp overlap
PGR 4 datasets
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 238 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 226 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 185 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 153 bp overlap
POLR2A 1 dataset
ChIP upper lobe of left lung ENCFF095BJW 250 bp overlap
PPARG 1 dataset
ChIP THP-1_DIFF GSE25426.PPARG.THP-1_DIFF 197 bp overlap
RBPJ 1 dataset
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 166 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 204 bp overlap
REST 1 dataset
ChIP hippocampus GSE144226.REST.hippocampus 126 bp overlap
SALL2 1 dataset
ChIP HEK293 GSE145940.SALL2.HEK293 198 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 66 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 66 bp overlap
SMAD2 3 datasets
ChIP hESC GSE29422.SMAD2.hESC 119 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 279 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 250 bp overlap
SMAD2-3 7 datasets
ChIP HGrC1_C134W-TGF GSE138496.SMAD2-3.HGrC1_C134W-TGF 202 bp overlap
ChIP HGrC1_C134W-TGF_SMAD4-KO GSE138496.SMAD2-3.HGrC1_C134W-TGF_SMAD4-KO 164 bp overlap
ChIP HGrC1_WT-TGF GSE138496.SMAD2-3.HGrC1_WT-TGF 143 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 254 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 303 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 303 bp overlap
ChIP MCF-10A_TGFB-16h GSE83787.SMAD2-3.MCF-10A_TGFB-16h 213 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 303 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 303 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 303 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 223 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 303 bp overlap
SMAD3 6 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 295 bp overlap
ChIP HMLE GSE104760.SMAD3.HMLE 151 bp overlap
ChIP HMLE_Doxycicline_TGFb GSE104760.SMAD3.HMLE_Doxycicline_TGFb 303 bp overlap
ChIP HMLE_TGFb GSE104760.SMAD3.HMLE_TGFb 268 bp overlap
ChIP LX2_CALCIPOTRIOL_TGFB1 GSE38103.SMAD3.LX2_CALCIPOTRIOL_TGFB1 237 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 173 bp overlap
SMAD4 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.SMAD4.HGrC1_C134W-TGF 79 bp overlap
SMARCA4 3 datasets
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 180 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 83 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 173 bp overlap
SMC1 1 dataset
ChIP monocyte_IFNg-LPS GSE120943.SMC1.monocyte_IFNg-LPS 160 bp overlap
SMC1A 4 datasets
ChIP monocyte_INFg GSE98367.SMC1A.monocyte_INFg 303 bp overlap
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 184 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d3 203 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d6 301 bp overlap
SMC3 1 dataset
ChIP peripheral-blood-neutrophil_Ecoli-1 GSE126755.SMC3.peripheral-blood-neutrophil_Ecoli-1 303 bp overlap
SP1 1 dataset
ChIP HCT116 ENCFF800LBN 176 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 142 bp overlap
SPDEF 1 dataset
ChIP A-549 GSE86957.SPDEF.A-549 303 bp overlap
SPI1 12 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 176 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 168 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 189 bp overlap
ChIP NB4 GSE128834.SPI1.NB4 259 bp overlap
ChIP THP-1_DIFF GSE25426.SPI1.THP-1_DIFF 205 bp overlap
ChIP macrophage_D7_donorP GSE128834.SPI1.macrophage_D7_donorP 258 bp overlap
ChIP monocyte GSE31621.SPI1.monocyte 220 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.SPI1.monocyte_MACROPHAGE 130 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 253 bp overlap
ChIP primary-monocyte_4h_donorO GSE128834.SPI1.primary-monocyte_4h_donorO 198 bp overlap
ChIP primary-neutrophil_donorE GSE128834.SPI1.primary-neutrophil_donorE 109 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 115 bp overlap
SRC 1 dataset
ChIP MDA-MB-231_LQ GSE95121.SRC.MDA-MB-231_LQ 192 bp overlap
STAT1 3 datasets
ChIP CD14_INFG GSE43036.STAT1.CD14_INFG 208 bp overlap
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 303 bp overlap
ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 267 bp overlap
STAT3 7 datasets
ChIP MDA-MB-468_EtOH GSE85579.STAT3.MDA-MB-468_EtOH 131 bp overlap
ChIP NCI-H358 GSE79707.STAT3.NCI-H358 192 bp overlap
ChIP monocyte_IFNg GSE120943.STAT3.monocyte_IFNg 106 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.STAT3.monocyte_IFNg-LPS 235 bp overlap
ChIP monocyte_IL10 GSE120943.STAT3.monocyte_IL10 180 bp overlap
ChIP monocyte_LPS GSE120943.STAT3.monocyte_LPS 274 bp overlap
ChIP monocyte_resting GSE120943.STAT3.monocyte_resting 137 bp overlap
TEAD1 2 datasets
ChIP CCLP1 GSE62272.TEAD1.CCLP1 77 bp overlap
ChIP MSTO GSE68170.TEAD1.MSTO 61 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 247 bp overlap
TP53 1 dataset
ChIP keratinocyte_CISP GSE56674.TP53.keratinocyte_CISP 224 bp overlap
TP63 4 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 63 bp overlap
ChIP HaCaT_caRAS_TGFB GSE60814.TP63.HaCaT_caRAS_TGFB 231 bp overlap
ChIP JHU-029 GSE88859.TP63.JHU-029 183 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 66 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 303 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 246 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 256 bp overlap