chr3 : 61,141,157 61,142,054
897 bp 96 TFs 1 linked gene
This 897 bp open chromatin element is linked to FHIT and is bound by 96 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
FHIT 109.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:61,136,157 – 61,147,054
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
96 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 219 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 724 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 170 bp overlap
BACH1 1 dataset
Motif ES_0h ES_0h-BACH1_MA1633.2 9 bp overlap
BCL11A 2 datasets
ChIP WA01 ENCSR000BIP.BCL11A.WA01 185 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 114 bp overlap
BCOR 5 datasets
ChIP WA01 GSE104690.BCOR.WA01 328 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 479 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 163 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 450 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 234 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 688 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCFF432ZEW 258 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 590 bp overlap
CTCF 2 datasets
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 410 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 216 bp overlap
CTNNB1 1 dataset
ChIP hESC_activinA_15h GSE99202.CTNNB1.hESC_activinA_15h 488 bp overlap
DPRX 2 datasets
Motif DE_12h DE_12h-DPRX_MA1480.2 9 bp overlap
Motif ES_0h ES_0h-DPRX_MA1480.2 9 bp overlap
EP300 2 datasets
ChIP WA01 ENCSR000BKK.EP300.WA01 176 bp overlap
ChIP hESC GSE17917.EP300.hESC 367 bp overlap
ESR1 5 datasets
ChIP Ishikawa_C2-3 GSE147141.ESR1.Ishikawa_C2-3 160 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 243 bp overlap
ChIP MCF-7_D538G GSE148277.ESR1.MCF-7_D538G 332 bp overlap
ChIP MCF-7_D538G_DMSO GSE148277.ESR1.MCF-7_D538G_DMSO 335 bp overlap
ChIP ZR751_E2 GSE72249.ESR1.ZR751_E2 212 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 454 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 609 bp overlap
FOSL2 2 datasets
Motif ES_0h ES_0h-FOSL2_MA0478.2 10 bp overlap
ChIP NPC GSE122631.FOSL2.NPC 188 bp overlap
FOXA1 2 datasets
ChIP ZR751 GSE72249.FOXA1.ZR751 256 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 334 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 338 bp overlap
ChIP DE DE-FOXA2-2 398 bp overlap
FOXM1 1 dataset
ChIP Ishikawa ENCFF578VDD 59 bp overlap
FOXP1 2 datasets
ChIP H9 GSE31006.FOXP1.H9 124 bp overlap
ChIP H9 GSE31006.FOXP1.H9 348 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 471 bp overlap
ChIP DE DE-GATA4-2 477 bp overlap
ChIP foregut GSE117136.GATA4.foregut 375 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 332 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 402 bp overlap
ChIP DE DE-GATA6-2 376 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 503 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 90 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 611 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 894 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 558 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 641 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 67 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 619 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 221 bp overlap
ChIP foregut GSE117136.GATA6.foregut 372 bp overlap
HDAC2 4 datasets
ChIP H1 ENCFF353UJQ 645 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 450 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 132 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 271 bp overlap
HNF4A 2 datasets
ChIP HCT-116_TCF4 GSE62890.HNF4A.HCT-116_TCF4 258 bp overlap
ChIP HCT-116_TCF4_DOX GSE62890.HNF4A.HCT-116_TCF4_DOX 330 bp overlap
HOXC12 2 datasets
Motif DE_12h DE_12h-HOXC12_MA0906.2 10 bp overlap
Motif ES_0h ES_0h-HOXC12_MA0906.2 10 bp overlap
JUN 10 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 603 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 440 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 897 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 608 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 226 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 426 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 897 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 897 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 897 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 867 bp overlap
JUND 5 datasets
ChIP H1 ENCFF010YXS 311 bp overlap
ChIP H1 ENCFF468JZD 231 bp overlap
ChIP HCT-116 ENCSR000BSA.JUND.HCT-116 204 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 271 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 196 bp overlap
KLF4 3 datasets
ChIP HAP1 GSE130417.KLF4.HAP1 392 bp overlap
ChIP WA09 GSE105028.KLF4.WA09 355 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 304 bp overlap
LEF1 1 dataset
ChIP hESC_WNT3A GSE64758.LEF1.hESC_WNT3A 251 bp overlap
Lef1 1 dataset
Motif ES_0h ES_0h-Lef1_MA0768.3 8 bp overlap
MAFK 1 dataset
ChIP H1 ENCFF854XWE 285 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 314 bp overlap
NANOG 16 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCFF065NZG 300 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 215 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 212 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP H1 ENCFF747ZPQ 204 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 443 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 303 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 304 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 277 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 897 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 897 bp overlap
ChIP hESC GSE18292.NANOG.hESC 349 bp overlap
ChIP hESC GSE20650.NANOG.hESC 370 bp overlap
ChIP hESC GSE20650.NANOG.hESC 180 bp overlap
ChIP hESC GSE18292.NANOG.hESC 141 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 335 bp overlap
NIPBL 4 datasets
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 590 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 457 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 442 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 379 bp overlap
ONECUT2 1 dataset
ChIP PC-3_hypoxia GSE106305.ONECUT2.PC-3_hypoxia 197 bp overlap
PBX3 1 dataset
Motif ES_0h ES_0h-PBX3_MA1114.2 11 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 205 bp overlap
POU4F2 2 datasets
Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap
Motif ES_0h ES_0h-POU4F2_MA0683.2 15 bp overlap
POU5F1 9 datasets
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 427 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 220 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 307 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 316 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 113 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 520 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 203 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 166 bp overlap
RAD21 5 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 536 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 330 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 506 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 414 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 231 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 215 bp overlap
SALL3 2 datasets
ChIP hiPSC GSE104863.SALL3.hiPSC 275 bp overlap
ChIP hiPSC GSE104863.SALL3.hiPSC 197 bp overlap
SIX1 2 datasets
Motif DE_12h DE_12h-SIX1_MA1118.2 9 bp overlap
Motif ES_0h ES_0h-SIX1_MA1118.2 9 bp overlap
SIX2 6 datasets
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
Motif ES_0h ES_0h-SIX2_MA1119.2 11 bp overlap
ChIP HEK GSE73865.SIX2.HEK 692 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 318 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 318 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 232 bp overlap
SIX4 1 dataset
ChIP WTC11 ENCFF891HYW 180 bp overlap
SMAD2 1 dataset
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 274 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 308 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 455 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 623 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 424 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 446 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 451 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 316 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 264 bp overlap
SMAD3 3 datasets
ChIP BG03 GSE21614.SMAD3.BG03 194 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 196 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 180 bp overlap
SMARCA4 5 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 593 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 232 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 490 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 295 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 897 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 897 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 741 bp overlap
SMARCC1 3 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 459 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 209 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 808 bp overlap
SOX13 1 dataset
Motif ES_0h ES_0h-SOX13_MA1120.2 7 bp overlap
SOX2 13 datasets
Motif ES_0h ES_0h-SOX2_MA0143.5 7 bp overlap
ChIP H9 GSE46837.SOX2.H9 156 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 897 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 278 bp overlap
ChIP hESC GSE18292.SOX2.hESC 221 bp overlap
ChIP hESC GSE69479.SOX2.hESC 224 bp overlap
ChIP hESC GSE18292.SOX2.hESC 101 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 417 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 238 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 361 bp overlap
ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 370 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 238 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 313 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 318 bp overlap
SOX9 1 dataset
Motif ES_0h ES_0h-SOX9_MA0077.2 8 bp overlap
SP1 4 datasets
ChIP HCT-116 ENCSR000BSF.SP1.HCT-116 134 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 271 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 205 bp overlap
ChIP WTC11 ENCFF688PEU 311 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SPI1 1 dataset
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 174 bp overlap
SREBF2 2 datasets
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
Motif ES_0h ES_0h-SREBF2_MA0596.1 10 bp overlap
STAT3 1 dataset
ChIP MDA-MB-453 GSE152203.STAT3.MDA-MB-453 202 bp overlap
SUPT6H 1 dataset
ChIP HCT-116_Inhibitor GSE130509.SUPT6H.HCT-116_Inhibitor 284 bp overlap
Sox3 1 dataset
Motif ES_0h ES_0h-Sox3_MA0514.3 7 bp overlap
Spz1 1 dataset
Motif ES_0h ES_0h-Spz1_MA0111.1 11 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 185 bp overlap
TBP 1 dataset
ChIP hESC GSE122298.TBP.hESC 136 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 317 bp overlap
TCF7L2 9 datasets
Motif ES_0h ES_0h-TCF7L2_MA0523.2 9 bp overlap
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 383 bp overlap
ChIP HCT-116_WT GSE127960.TCF7L2.HCT-116_WT 166 bp overlap
ChIP HCT-116_sc2 GSE127960.TCF7L2.HCT-116_sc2 334 bp overlap
ChIP HCT116 ENCFF038POZ 143 bp overlap
ChIP LNCaP GSE51621.TCF7L2.LNCaP 294 bp overlap
ChIP MCF-7 ENCFF219LIX 452 bp overlap
ChIP MCF-7 ENCSR000EWT.TCF7L2.MCF-7 287 bp overlap
ChIP MDA-MB-453 GSE45201.TCF7L2.MDA-MB-453 201 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 192 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 425 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 289 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 249 bp overlap
ZBTB24 1 dataset
Motif ES_0h ES_0h-ZBTB24_MA2330.1 10 bp overlap
ZNF114 1 dataset
ChIP GM23338 ENCFF631OSW 299 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 443 bp overlap
ZNF24 1 dataset
Motif ES_0h ES_0h-ZNF24_MA1124.1 13 bp overlap
ZNF274 2 datasets
Motif DE_12h DE_12h-ZNF274_MA1592.2 12 bp overlap
Motif ES_0h ES_0h-ZNF274_MA1592.2 12 bp overlap
ZNF331 1 dataset
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 139 bp overlap
ZNF462 3 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCFF896CCA 122 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 848 bp overlap
ZNF610 1 dataset
Motif ES_0h ES_0h-ZNF610_MA1713.2 10 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 218 bp overlap