chr2 : 65,137,434 65,137,879
445 bp 108 TFs 1 linked gene
This 445 bp open chromatin element is linked to RAB1A and is bound by 108 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
RAB1A 7.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:65,132,434 – 65,142,879
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
108 transcription factors
Source
Cell type
AEBP2 2 datasets
ChIP HEK293 ENCFF002GMR 90 bp overlap
ChIP HEK293 ENCSR769JRS.AEBP2.HEK293 72 bp overlap
BRD1 1 dataset
ChIP RKO GSE47190.BRD1.RKO 119 bp overlap
CEBPA 1 dataset
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 136 bp overlap
EBF3 1 dataset
Motif DE_72h DE_72h-EBF3_MA1637.2 9 bp overlap
ELF1 1 dataset
Motif DE_72h DE_72h-ELF1_MA0473.4 9 bp overlap
ERG 1 dataset
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 160 bp overlap
ESR1 1 dataset
ChIP MCF-7_ethanol_MKL1D200 GSE107476.ESR1.MCF-7_ethanol_MKL1D200 252 bp overlap
Ebf2 2 datasets
Motif DE_72h DE_72h-Ebf2_MA1604.2 9 bp overlap
Motif DE_72h DE_72h-Ebf2_MA1604.2 9 bp overlap
Erg 1 dataset
Motif DE_72h DE_72h-Erg_MA0474.4 10 bp overlap
FOXA1 14 datasets
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 184 bp overlap
ChIP 22Rv1_R1881 GSE80742.FOXA1.22Rv1_R1881 182 bp overlap
ChIP A-549 ENCSR000BPX.FOXA1.A-549 149 bp overlap
ChIP HepG2 ENCFF207NVJ 281 bp overlap
ChIP HepG2 ENCFF740VZW 285 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 108 bp overlap
ChIP MCF-7 GSE80808.FOXA1.MCF-7 217 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 282 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 213 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 137 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 289 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 249 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 347 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 170 bp overlap
FOXA2 12 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 310 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 229 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 277 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 306 bp overlap
ChIP DE DE-FOXA2-1 404 bp overlap
ChIP DE DE-FOXA2-2 358 bp overlap
ChIP HepG2 ENCFF533COJ 296 bp overlap
ChIP HepG2 ENCFF533COJ 247 bp overlap
ChIP HepG2 ENCFF570ABM 327 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 292 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 340 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 242 bp overlap
FOXD2 1 dataset
Motif DE_72h DE_72h-FOXD2_MA0847.4 11 bp overlap
FOXD3 1 dataset
Motif DE_72h DE_72h-FOXD3_MA0041.3 14 bp overlap
GABPA 2 datasets
Motif DE_72h DE_72h-GABPA_MA0062.4 10 bp overlap
ChIP VCaP GSE49091.GABPA.VCaP 51 bp overlap
GATA2 1 dataset
ChIP SKH1 GSE87283.GATA2.SKH1 234 bp overlap
GATA4 6 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 266 bp overlap
ChIP DE DE-GATA4-1 275 bp overlap
ChIP DE DE-GATA4-2 277 bp overlap
ChIP foregut GSE117136.GATA4.foregut 355 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 233 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 256 bp overlap
GATA6 6 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 118 bp overlap
ChIP DE DE-GATA6-1 284 bp overlap
ChIP DE DE-GATA6-2 350 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 205 bp overlap
ChIP foregut GSE117136.GATA6.foregut 270 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 241 bp overlap
GFI1B 2 datasets
ChIP HEK293 ENCFF264FBS 103 bp overlap
ChIP HEK293 ENCSR445PDR.GFI1B.HEK293 114 bp overlap
HDAC2 2 datasets
ChIP Hep-G2 ENCSR000BMC.HDAC2.Hep-G2 151 bp overlap
ChIP K-562 ENCSR075HTM.HDAC2.K-562 217 bp overlap
Hnf1A 1 dataset
Motif DE_72h DE_72h-Hnf1A_MA1991.2 10 bp overlap
IKZF2 1 dataset
Motif DE_72h DE_72h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_72h DE_72h-Ikzf3_MA1992.2 9 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 445 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 295 bp overlap
KLF1 1 dataset
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 191 bp overlap
KLF16 1 dataset
ChIP HEK293 ENCSR397DQC.KLF16.HEK293 185 bp overlap
KLF7 1 dataset
ChIP HEK293 ENCSR604VWJ.KLF7.HEK293 118 bp overlap
Lef1 2 datasets
Motif DE_48h DE_48h-Lef1_MA0768.3 8 bp overlap
Motif DE_72h DE_72h-Lef1_MA0768.3 8 bp overlap
MAZ 1 dataset
Motif DE_72h DE_72h-MAZ_MA1522.2 8 bp overlap
MECOM 1 dataset
ChIP SKH1_CEBPA-ER_E2 GSE102697.MECOM.SKH1_CEBPA-ER_E2 172 bp overlap
MEF2B 2 datasets
Motif DE_48h DE_48h-MEF2B_MA0660.1 12 bp overlap
Motif DE_72h DE_72h-MEF2B_MA0660.1 12 bp overlap
MEF2D 2 datasets
Motif DE_48h DE_48h-MEF2D_MA0773.1 12 bp overlap
Motif DE_72h DE_72h-MEF2D_MA0773.1 12 bp overlap
MYNN 2 datasets
ChIP HEK293 ENCFF897QZG 139 bp overlap
ChIP HEK293 ENCSR707BNG.MYNN.HEK293 125 bp overlap
MYOG 1 dataset
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 120 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 131 bp overlap
NKX2-2 1 dataset
Motif DE_72h DE_72h-NKX2-2_MA1645.2 8 bp overlap
PATZ1 1 dataset
Motif DE_72h DE_72h-PATZ1_MA1961.2 11 bp overlap
PGR 1 dataset
ChIP myometrium_TP1 GSE137550.PGR.myometrium_TP1 155 bp overlap
PRDM9 1 dataset
Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap
RBPJ 2 datasets
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
REST 2 datasets
ChIP HEK293 ENCFF073DOT 86 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 144 bp overlap
SP3 1 dataset
ChIP HEK293 ENCSR141PZA.SP3.HEK293 189 bp overlap
SPIB 1 dataset
Motif DE_72h DE_72h-SPIB_MA0081.3 13 bp overlap
Spi1 1 dataset
Motif DE_72h DE_72h-Spi1_MA0080.7 13 bp overlap
TCF7L2 1 dataset
Motif DE_72h DE_72h-TCF7L2_MA0523.2 9 bp overlap
TSHZ1 1 dataset
ChIP HEK293 ENCSR217WRC.TSHZ1.HEK293 157 bp overlap
Tfcp2l1 2 datasets
Motif DE_48h DE_48h-Tfcp2l1_MA0145.2 14 bp overlap
Motif DE_72h DE_72h-Tfcp2l1_MA0145.2 14 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 60 bp overlap
ZBTB1 1 dataset
ChIP HEK293 ENCFF916DEM 97 bp overlap
ZBTB11 2 datasets
ChIP HEK293 ENCFF262GZJ 124 bp overlap
ChIP HEK293 ENCSR882ZTS.ZBTB11.HEK293 141 bp overlap
ZBTB8A 2 datasets
ChIP HEK293 ENCFF303WRD 135 bp overlap
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 159 bp overlap
ZC3H11A 3 datasets
ChIP A-549 ENCSR277OOQ.ZC3H11A.A-549 191 bp overlap
ChIP A549 ENCFF640AQE 64 bp overlap
ChIP K562 ENCFF850RGJ 155 bp overlap
ZEB1 2 datasets
ChIP HEK293 ENCSR909HMT.ZEB1.HEK293 141 bp overlap
ChIP Hep-G2 ENCSR000BVN.ZEB1.Hep-G2 242 bp overlap
ZFP3 2 datasets
ChIP HEK293 ENCFF345CRU 110 bp overlap
ChIP HEK293 ENCSR134QIE.ZFP3.HEK293 132 bp overlap
ZFP37 1 dataset
ChIP HEK293 ENCSR365GRX.ZFP37.HEK293 153 bp overlap
ZNF138 2 datasets
ChIP HEK293 ENCFF585PTQ 127 bp overlap
ChIP HEK293 ENCSR551KAP.ZNF138.HEK293 124 bp overlap
ZNF140 2 datasets
ChIP HEK293 ENCFF501RUF 63 bp overlap
ChIP HEK293 ENCSR464KFG.ZNF140.HEK293 121 bp overlap
ZNF143 1 dataset
Motif DE_72h DE_72h-ZNF143_MA0088.2 16 bp overlap
ZNF19 1 dataset
ChIP HEK293 ENCFF811PGJ 106 bp overlap
ZNF223 2 datasets
ChIP HEK293 ENCFF408UAU 128 bp overlap
ChIP HEK293 ENCSR906PCS.ZNF223.HEK293 145 bp overlap
ZNF24 1 dataset
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 156 bp overlap
ZNF266 2 datasets
ChIP HEK293 ENCFF483FIW 113 bp overlap
ChIP HEK293 ENCSR466VYP.ZNF266.HEK293 152 bp overlap
ZNF292 2 datasets
ChIP HEK293 ENCFF460VUS 99 bp overlap
ChIP HEK293 ENCSR228PGT.ZNF292.HEK293 50 bp overlap
ZNF34 2 datasets
ChIP HEK293 ENCFF481TFV 185 bp overlap
ChIP HEK293 ENCSR727PIC.ZNF34.HEK293 224 bp overlap
ZNF394 2 datasets
ChIP HEK293 ENCFF236OPX 215 bp overlap
ChIP HEK293 ENCSR125DNC.ZNF394.HEK293 221 bp overlap
ZNF404 2 datasets
ChIP HEK293 ENCFF538SAN 164 bp overlap
ChIP HEK293 ENCSR669GUM.ZNF404.HEK293 135 bp overlap
ZNF426 2 datasets
ChIP HEK293 ENCFF957XYN 184 bp overlap
ChIP HEK293 ENCSR224NFP.ZNF426.HEK293 202 bp overlap
ZNF433 2 datasets
ChIP HEK293 ENCFF115FJL 113 bp overlap
ChIP HEK293 ENCSR586BRJ.ZNF433.HEK293 142 bp overlap
ZNF518A 2 datasets
ChIP HEK293 ENCFF892ULS 142 bp overlap
ChIP HEK293 ENCSR159GFL.ZNF518A.HEK293 196 bp overlap
ZNF529 1 dataset
ChIP HEK293 ENCFF090MHG 121 bp overlap
ZNF530 2 datasets
ChIP HEK293 ENCFF931DWM 122 bp overlap
ChIP HEK293 ENCSR701RXW.ZNF530.HEK293 105 bp overlap
ZNF547 2 datasets
ChIP HEK293 ENCFF693MRM 128 bp overlap
ChIP HEK293 ENCSR909TSW.ZNF547.HEK293 140 bp overlap
ZNF555 2 datasets
ChIP HEK293 ENCFF406QFI 85 bp overlap
ChIP HEK293 ENCSR767XSF.ZNF555.HEK293 160 bp overlap
ZNF623 2 datasets
ChIP HEK293 ENCFF505YHP 89 bp overlap
ChIP HEK293 ENCSR022IZK.ZNF623.HEK293 144 bp overlap
ZNF629 2 datasets
ChIP HEK293 ENCFF096ELQ 100 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 136 bp overlap
ZNF654 2 datasets
ChIP HEK293 ENCFF636WIC 75 bp overlap
ChIP HEK293 ENCSR504VDV.ZNF654.HEK293 118 bp overlap
ZNF664 2 datasets
ChIP HEK293 ENCFF343XSW 53 bp overlap
ChIP HEK293 ENCSR714LZQ.ZNF664.HEK293 129 bp overlap
ZNF682 1 dataset
Motif DE_72h DE_72h-ZNF682_MA1599.2 11 bp overlap
ZNF791 2 datasets
ChIP HEK293 ENCFF232OEV 71 bp overlap
ChIP HEK293 ENCSR775HFF.ZNF791.HEK293 218 bp overlap
ZXDB 2 datasets
ChIP HEK293 ENCFF835SGA 86 bp overlap
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 156 bp overlap