chr1 : 3,067,788 – 3,068,493
705 bp 86 TFs 1 linked gene
This 705 bp open chromatin element is linked to PRDM16-DT and is bound by 86 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PRDM16-DT 4.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:3,062,788 – 3,073,493
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
AATF 1 dataset
ChIP NALM-6 GSE93626.AATF.NALM-6 275 bp overlap
AR 1 dataset
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 347 bp overlap
ARID2 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 303 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-T910M 213 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 556 bp overlap
BCL11A 1 dataset
ChIP MCF-10A ERP003925.BCL11A.MCF-10A 100 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 275 bp overlap
BRD4 9 datasets
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 227 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 569 bp overlap
ChIP HAP1 GSE108387.BRD4.HAP1 454 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 159 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 459 bp overlap
ChIP T-47D ERP003925.BRD4.T-47D 477 bp overlap
ChIP retina_AB1-FW13 GSE86981.BRD4.retina_AB1-FW13 274 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 187 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 651 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 337 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 612 bp overlap
CDK9 2 datasets
ChIP HCT-116 GSE72622.CDK9.HCT-116 284 bp overlap
ChIP HCT-116 GSE72622.CDK9.HCT-116 63 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 213 bp overlap
CTBP2 2 datasets
ChIP WA01 ENCSR000EUO.CTBP2.WA01 232 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 285 bp overlap
CTCF 4 datasets
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 120 bp overlap
ChIP nerve_tibial ENCSR434XLP.CTCF.nerve_tibial 309 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 587 bp overlap
ChIP thyroid gland ENCFF748ICQ 311 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 449 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF274GAT 120 bp overlap
ChIP BLaER1 ENCFF364PUR 109 bp overlap
DNMT3B 1 dataset
ChIP HUES-8_TripleKO-TET1-2-3 GSE99346.DNMT3B.HUES-8_TripleKO-TET1-2-3 67 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 145 bp overlap
EGR1 1 dataset
ChIP A-375 GSE116190.EGR1.A-375 334 bp overlap
ERG 1 dataset
ChIP K-562 GSE23730.ERG.K-562 282 bp overlap
ESR1 3 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 396 bp overlap
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 308 bp overlap
ChIP MCF-7_estradiol_45min_ChIP-and-reChIP GSE99626.ESR1.MCF-7_estradiol_45min_ChIP-and-reChIP 123 bp overlap
ETS1 3 datasets
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 514 bp overlap
ChIP cardiomyocyte_D14 GSE129986.ETS1.cardiomyocyte_D14 216 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 436 bp overlap
EZH2 34 datasets
ChIP A673 ENCFF790MVL 465 bp overlap
ChIP A673 ENCFF790MVL 596 bp overlap
ChIP A673 ENCFF955JRZ 465 bp overlap
ChIP A673 ENCFF955JRZ 596 bp overlap
ChIP DU145_SH4 GSE135623.EZH2.DU145_SH4 396 bp overlap
ChIP GM23248 ENCFF506FWX 445 bp overlap
ChIP GM23338 ENCFF613YON 705 bp overlap
ChIP GM23338 ENCFF886DXX 406 bp overlap
ChIP H1 ENCFF232NZA 705 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 705 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 700 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 600 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 212 bp overlap
ChIP SF8628 GSE94834.EZH2.SF8628 325 bp overlap
ChIP VCaP_ETOH GSE28950.EZH2.VCaP_ETOH 705 bp overlap
ChIP astrocyte ENCFF365JTP 705 bp overlap
ChIP astrocyte ENCFF365JTP 163 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 705 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 295 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 705 bp overlap
ChIP fibroblast of lung ENCFF479BAW 442 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 678 bp overlap
ChIP hESC GSE113817.EZH2.hESC 655 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 478 bp overlap
ChIP hepatocyte ENCFF552DZB 705 bp overlap
ChIP keratinocyte ENCFF070STK 492 bp overlap
ChIP keratinocyte ENCFF070STK 460 bp overlap
ChIP myotube ENCFF857GWB 440 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 605 bp overlap
ChIP neural ENCSR511CUH.EZH2.neural 629 bp overlap
ChIP neural progenitor cell ENCFF018MKA 705 bp overlap
ChIP neural progenitor cell ENCFF472NFV 705 bp overlap
ChIP prostate-cancer_HA GSE107780.EZH2.prostate-cancer_HA 501 bp overlap
ChIP prostate-cancer_plko GSE107780.EZH2.prostate-cancer_plko 401 bp overlap
EZH2_phosphoT487 2 datasets
ChIP PC-3 ENCSR617RSQ.EZH2_phosphoT487.PC-3 556 bp overlap
ChIP SK-N-SH ENCSR297MUV.EZH2_phosphoT487.SK-N-SH 253 bp overlap
GABPA 2 datasets
ChIP WA01 ENCSR000BIW.GABPA.WA01 415 bp overlap
ChIP WA01 ENCSR000BIW.GABPA.WA01 181 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 158 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 139 bp overlap
HEXIM1 2 datasets
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 382 bp overlap
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 51 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 579 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 500 bp overlap
HNF4A 1 dataset
ChIP KATO-III GSE114018.HNF4A.KATO-III 146 bp overlap
HNRNPL 1 dataset
ChIP Hep-G2 GSE120104.HNRNPL.Hep-G2 161 bp overlap
HNRNPLL 1 dataset
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 81 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 627 bp overlap
JARID2 2 datasets
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 705 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 518 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 280 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 281 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 55 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 600 bp overlap
KDM4C 1 dataset
ChIP SW1783 GSE92483.KDM4C.SW1783 114 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 197 bp overlap
KMT2A 1 dataset
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 71 bp overlap
MAX 1 dataset
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 287 bp overlap
MBD2 1 dataset
ChIP HeLa GSE41006.MBD2.HeLa 252 bp overlap
MED1 1 dataset
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 257 bp overlap
MEN1 2 datasets
ChIP IMS-M2_DMSO GSE129636.MEN1.IMS-M2_DMSO 705 bp overlap
ChIP OCI-AML-3_VTP GSE129636.MEN1.OCI-AML-3_VTP 236 bp overlap
MXI1 2 datasets
ChIP neural ENCSR934NHU.MXI1.neural 534 bp overlap
ChIP neural cell ENCFF623HQN 296 bp overlap
MYB 1 dataset
ChIP MOLT-3 GSE59657.MYB.MOLT-3 141 bp overlap
MYC-DAXX 1 dataset
ChIP HEK293_GAL4-DBD GSE107348.MYC-DAXX.HEK293_GAL4-DBD 355 bp overlap
MYOCD 1 dataset
ChIP A-549 GSE128921.MYOCD.A-549 207 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 193 bp overlap
NANOG 2 datasets
ChIP WA01 ERP004238.NANOG.WA01 240 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 347 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 156 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 217 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 574 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 497 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 335 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 73 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 357 bp overlap
PHIP 2 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 99 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 253 bp overlap
POLR2A 2 datasets
ChIP tibial nerve ENCFF983HAU 429 bp overlap
ChIP tibial nerve ENCFF983HAU 471 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 705 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 429 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 705 bp overlap
RAD21 1 dataset
ChIP neural ENCSR198ZYJ.RAD21.neural 673 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 453 bp overlap
RING1 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.RING1.SYO-1_shRING1A-B 325 bp overlap
RNF2 5 datasets
ChIP H1 ENCFF239FFS 151 bp overlap
ChIP H1 ENCFF239FFS 204 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 503 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 549 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 705 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 161 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 424 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 523 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 482 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 277 bp overlap
SMARCA4 5 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 317 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 584 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 222 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 162 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 481 bp overlap
SMARCC1 3 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 197 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 104 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 311 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 302 bp overlap
SOX17_M 2 datasets
ChIP DE_D2 DED2-SOX17-M_Batch_II 128 bp overlap
ChIP DE_D2 DED2-SOX17-M_Batch_II 220 bp overlap
SS18 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 646 bp overlap
SUZ12 5 datasets
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 484 bp overlap
ChIP H1 ENCFF881NFR 705 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 705 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 705 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 415 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 189 bp overlap
TCF7 1 dataset
ChIP breast-organoid_BRCA2-mut GSE113909.TCF7.breast-organoid_BRCA2-mut 516 bp overlap
TFAP2C 4 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 145 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 449 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 246 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 71 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 99 bp overlap
TP63 3 datasets
ChIP breast-organoid GSE113909.TP63.breast-organoid 116 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 151 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 141 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 705 bp overlap
TRIM28 1 dataset
ChIP HCT-116 GSE72622.TRIM28.HCT-116 301 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 562 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 190 bp overlap
ZBTB26 1 dataset
ChIP HEK293 ENCFF752POA 69 bp overlap
ZBTB33 1 dataset
ChIP HepG2 ENCFF778UKV 106 bp overlap
ZBTB38 1 dataset
ChIP HepG2 ENCFF875UQX 240 bp overlap
ZNF19 1 dataset
ChIP HEK293T GSE78099.ZNF19.HEK293T 128 bp overlap
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