chr20 : 31,553,230 31,553,610
380 bp 93 TFs 2 linked genes
This 380 bp open chromatin element is linked to HM13 and MCTS2 and is bound by 93 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
HM13 5.8 kb Proximal Proximity
MCTS2 5.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:31,548,230 – 31,558,610
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
93 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 146 bp overlap
ARID1A 6 datasets
ChIP MCF-7 GSE123284.ARID1A.MCF-7 284 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 380 bp overlap
ChIP MCF-7_DCDT GSE123284.ARID1A.MCF-7_DCDT 323 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 380 bp overlap
ChIP RMG-I GSE120058.ARID1A.RMG-I 380 bp overlap
ChIP RMG-I GSE104545.ARID1A.RMG-I 380 bp overlap
BRD4 4 datasets
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 127 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 139 bp overlap
ChIP OVCAR-3_DMSO GSE77568.BRD4.OVCAR-3_DMSO 219 bp overlap
ChIP SUM229PE_pos_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_pos_30nMtrametinib_24h 269 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 148 bp overlap
CEBPA 3 datasets
ChIP T-47D GSE132649.CEBPA.T-47D 227 bp overlap
ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 305 bp overlap
ChIP T-47D_siCtrl GSE132649.CEBPA.T-47D_siCtrl 338 bp overlap
CEBPB 4 datasets
ChIP Ishikawa ENCFF010USJ 179 bp overlap
ChIP Ishikawa ENCSR000BTT.CEBPB.Ishikawa 302 bp overlap
ChIP MCF-7 ENCFF772ZTQ 241 bp overlap
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 255 bp overlap
CREB1 2 datasets
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 258 bp overlap
ChIP MCF-7 ENCSR897JAS.CREB1.MCF-7 209 bp overlap
CREBBP 2 datasets
ChIP MCF-7 ERP000901.CREBBP.MCF-7 182 bp overlap
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 207 bp overlap
CTBP1 2 datasets
ChIP MCF-7 ENCFF969VBY 230 bp overlap
ChIP MCF-7 ENCSR636EYA.CTBP1.MCF-7 288 bp overlap
CTBP2 1 dataset
ChIP MCF-7 GSE107013.CTBP2.MCF-7 160 bp overlap
CTCF 1 dataset
ChIP thyroid gland ENCFF204HWS 282 bp overlap
Cebpa 4 datasets
ChIP BLaER1 ENCFF031ISE 61 bp overlap
ChIP BLaER1 ENCFF093OYK 253 bp overlap
ChIP BLaER1 ENCFF364PUR 380 bp overlap
ChIP BLaER1 ENCFF460KDD 63 bp overlap
DPF2 2 datasets
ChIP MCF-7 ENCFF712EXQ 229 bp overlap
ChIP MCF-7 ENCSR234VCE.DPF2.MCF-7 250 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 214 bp overlap
EP300 2 datasets
ChIP Ishikawa ENCFF364ZWT 336 bp overlap
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 262 bp overlap
ESR1 17 datasets
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 133 bp overlap
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 159 bp overlap
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 109 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 212 bp overlap
ChIP Ishikawa_E2 GSE109891.ESR1.Ishikawa_E2 119 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 331 bp overlap
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 232 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 232 bp overlap
ChIP MCF-7 ENCFF004AKH 361 bp overlap
ChIP MCF-7 GSE94023.ESR1.MCF-7 196 bp overlap
ChIP MCF-7_E2-20min-ERalpha GSE94023.ESR1.MCF-7_E2-20min-ERalpha 275 bp overlap
ChIP MCF-7_E2-320min-ERalpha GSE94023.ESR1.MCF-7_E2-320min-ERalpha 146 bp overlap
ChIP MCF-7_E2-40min-ERalpha GSE94023.ESR1.MCF-7_E2-40min-ERalpha 200 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 168 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 206 bp overlap
ChIP MCF-7_Veh_sc GSE117569.ESR1.MCF-7_Veh_sc 282 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 231 bp overlap
ESR1_pS118 2 datasets
ChIP MCF-7_E2_sc GSE117569.ESR1_pS118.MCF-7_E2_sc 380 bp overlap
ChIP MCF-7_Veh_sc GSE117569.ESR1_pS118.MCF-7_Veh_sc 289 bp overlap
FOS 1 dataset
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 227 bp overlap
FOXA1 10 datasets
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 158 bp overlap
ChIP LNCaP-C4-2B_TFS GSE123618.FOXA1.LNCaP-C4-2B_TFS 167 bp overlap
ChIP MCF-7 GSE72249.FOXA1.MCF-7 242 bp overlap
ChIP MCF-7 ENCSR126YEB.FOXA1.MCF-7 246 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 202 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 269 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 234 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 201 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 218 bp overlap
ChIP MCF-7_TAMR_E2_TAM ERP000380.FOXA1.MCF-7_TAMR_E2_TAM 172 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 364 bp overlap
ChIP DE DE-FOXA2-2 365 bp overlap
FOXM1 3 datasets
ChIP Ishikawa ENCFF578VDD 380 bp overlap
ChIP MCF-7 ENCFF363FKA 324 bp overlap
ChIP MCF-7 ENCSR000BUJ.FOXM1.MCF-7 133 bp overlap
GATA2 1 dataset
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 193 bp overlap
GATA3 5 datasets
ChIP MCF-7 ENCFF437NQS 353 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 243 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 219 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 232 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 213 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 370 bp overlap
ChIP DE DE-GATA4-2 380 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 364 bp overlap
ChIP DE DE-GATA6-2 380 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 247 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 164 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 292 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 327 bp overlap
GATAD2B 2 datasets
ChIP MCF-7 ENCFF718AXM 327 bp overlap
ChIP MCF-7 ENCSR979FQP.GATAD2B.MCF-7 220 bp overlap
GRHL1 1 dataset
ChIP MCF-7_ARID1A-KO GSE140185.GRHL1.MCF-7_ARID1A-KO 201 bp overlap
GRHL2 9 datasets
ChIP HBE GSE46194.GRHL2.HBE 212 bp overlap
ChIP MCF-7 GSE109820.GRHL2.MCF-7 331 bp overlap
ChIP MCF-7 GSE99680.GRHL2.MCF-7 170 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 380 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 380 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 269 bp overlap
ChIP OVCAR-3 GSE71018.GRHL2.OVCAR-3 145 bp overlap
ChIP PEO1 GSE71018.GRHL2.PEO1 215 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 220 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 253 bp overlap
HDAC2 2 datasets
ChIP MCF-7 ENCFF881POI 340 bp overlap
ChIP MCF-7 ENCSR000BTP.HDAC2.MCF-7 132 bp overlap
HOXB13 1 dataset
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 184 bp overlap
IFNA1 1 dataset
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 275 bp overlap
JUND 1 dataset
ChIP MCF-7 ENCSR000BSU.JUND.MCF-7 154 bp overlap
KDM1A 3 datasets
ChIP HepG2 ENCFF240UWG 152 bp overlap
ChIP keratinocyte_diff GSE57702.KDM1A.keratinocyte_diff 165 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 227 bp overlap
KLF4 1 dataset
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 170 bp overlap
MAX 4 datasets
ChIP Ishikawa ENCFF064TDQ 363 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 133 bp overlap
ChIP MCF-7 ENCFF169IXS 380 bp overlap
ChIP MCF-7 ENCSR000BUL.MAX.MCF-7 253 bp overlap
MAZ 1 dataset
ChIP MCF-7 ENCSR288IJC.MAZ.MCF-7 203 bp overlap
MSX2 1 dataset
ChIP MCF-7 ENCSR604WXQ.MSX2.MCF-7 186 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 78 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 293 bp overlap
NEUROD1 2 datasets
ChIP MCF-7 ENCFF232JNU 327 bp overlap
ChIP MCF-7 ENCSR006WUS.NEUROD1.MCF-7 364 bp overlap
NFIB 2 datasets
ChIP MCF-7 ENCFF799WGQ 373 bp overlap
ChIP MCF-7 ENCSR702BYX.NFIB.MCF-7 308 bp overlap
NFIC 2 datasets
ChIP Ishikawa ENCFF029AAD 302 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 227 bp overlap
NR2F2 1 dataset
ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 244 bp overlap
NR3C1 2 datasets
ChIP HCC1937 GSE152203.NR3C1.HCC1937 164 bp overlap
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 149 bp overlap
NR3C1_mut 2 datasets
ChIP MCF-7_E2_Dex GSE81510.NR3C1_mut.MCF-7_E2_Dex 149 bp overlap
ChIP MCF-7_ICI_Dex GSE81510.NR3C1_mut.MCF-7_ICI_Dex 233 bp overlap
OVOL1 1 dataset
ChIP MCF-7 ENCFF537GWI 320 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 317 bp overlap
PGR 2 datasets
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 294 bp overlap
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 231 bp overlap
POLR2A 4 datasets
ChIP HepG2 ENCFF736SLT 266 bp overlap
ChIP K562 ENCFF137JSF 265 bp overlap
ChIP PFSK-1 ENCFF576NIT 340 bp overlap
ChIP prostate gland ENCFF881OMH 200 bp overlap
POLR2G 1 dataset
ChIP HepG2 ENCFF241AEG 299 bp overlap
PRDM15 4 datasets
ChIP Hep-G2 ENCSR011INW.PRDM15.Hep-G2 144 bp overlap
ChIP HepG2 ENCFF259LUZ 380 bp overlap
ChIP HepG2 ENCFF259LUZ 178 bp overlap
ChIP WTC11 ENCFF108TMF 373 bp overlap
RBM22 1 dataset
ChIP K-562 ENCSR848AOP.RBM22.K-562 179 bp overlap
RBM25 3 datasets
ChIP K-562 ENCSR791OZM.RBM25.K-562 234 bp overlap
ChIP K562 ENCFF248CGR 268 bp overlap
ChIP K562 ENCFF957ORK 315 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 261 bp overlap
SIN3A 1 dataset
ChIP MCF-7 ENCSR000BUM.SIN3A.MCF-7 188 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 148 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 333 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 327 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 325 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 278 bp overlap
SMAD3 2 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 340 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 259 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 170 bp overlap
SMARCA4 3 datasets
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 334 bp overlap
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 290 bp overlap
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 305 bp overlap
SMARCB1 5 datasets
ChIP MCF-7 GSE123284.SMARCB1.MCF-7 227 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 380 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 353 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.SMARCB1.MCF-7_Fulvestrant 237 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 318 bp overlap
SMARCC1 2 datasets
ChIP MCF-7 GSE124225.SMARCC1.MCF-7 293 bp overlap
ChIP MCF-7_KO GSE124225.SMARCC1.MCF-7_KO 219 bp overlap
SMARCD3 2 datasets
ChIP MCF-7 GSE124225.SMARCD3.MCF-7 357 bp overlap
ChIP MCF-7_KO GSE124225.SMARCD3.MCF-7_KO 276 bp overlap
SMARCE1 2 datasets
ChIP MCF-7 ENCFF890MHF 277 bp overlap
ChIP MCF-7 ENCSR431TLD.SMARCE1.MCF-7 176 bp overlap
SNAI2 1 dataset
ChIP PC-9_1DF GSE131687.SNAI2.PC-9_1DF 257 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 161 bp overlap
SPDEF 2 datasets
ChIP MCF-7 ENCFF827PZY 328 bp overlap
ChIP MCF-7 ENCSR042GSX.SPDEF.MCF-7 289 bp overlap
SSRP1 1 dataset
ChIP HepG2 ENCFF540BLL 380 bp overlap
STAT3 5 datasets
ChIP HCC1187 GSE152203.STAT3.HCC1187 297 bp overlap
ChIP HCC1937 GSE152203.STAT3.HCC1937 150 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 175 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 256 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 206 bp overlap
SUPT5H 1 dataset
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 248 bp overlap
SUZ12 1 dataset
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 183 bp overlap
TCF12 2 datasets
ChIP Ishikawa ENCFF467DDW 379 bp overlap
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 282 bp overlap
TEAD4 2 datasets
ChIP Ishikawa ENCFF772OTG 282 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 273 bp overlap
TFAP2A 2 datasets
ChIP MCF-7_E2 GSE60270.TFAP2A.MCF-7_E2 247 bp overlap
ChIP WA09 GSE105081.TFAP2A.WA09 277 bp overlap
TFAP2C 1 dataset
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 271 bp overlap
TOE1 1 dataset
ChIP MCF-7 ENCFF544WQF 301 bp overlap
TRPS1 2 datasets
ChIP MCF-7 GSE133072.TRPS1.MCF-7 309 bp overlap
ChIP T-47D GSE107013.TRPS1.T-47D 121 bp overlap
USF1 2 datasets
ChIP Ishikawa ENCFF728IEG 261 bp overlap
ChIP Ishikawa ENCSR000BSX.USF1.Ishikawa 144 bp overlap
YY1 1 dataset
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 131 bp overlap
YY1AP1 4 datasets
ChIP MCF-7_E2 GSE125594.YY1AP1.MCF-7_E2 309 bp overlap
ChIP MCF-7_Veh GSE125594.YY1AP1.MCF-7_Veh 355 bp overlap
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 380 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 290 bp overlap
ZMYM3 5 datasets
ChIP Hep-G2 ENCSR848YWD.ZMYM3.Hep-G2 144 bp overlap
ChIP Hep-G2_Ab_JH39-2-2F10 GSE97661.ZMYM3.Hep-G2_Ab_JH39-2-2F10 126 bp overlap
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 165 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 151 bp overlap
ChIP K562 ENCFF361LXT 252 bp overlap
ZNF143 2 datasets
ChIP MCF-7 GSE76454.ZNF143.MCF-7 224 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 290 bp overlap
ZNF217 3 datasets
ChIP MCF-7 ENCFF379OSU 380 bp overlap
ChIP MCF-7 ENCSR465XQW.ZNF217.MCF-7 376 bp overlap
ChIP MCF-7 ENCSR912ATU.ZNF217.MCF-7 250 bp overlap
ZNF579 1 dataset
ChIP MCF-7 ENCFF550XRS 264 bp overlap
ZNF629 2 datasets
ChIP Hep-G2 ENCSR363ASY.ZNF629.Hep-G2 219 bp overlap
ChIP HepG2 ENCFF490FFQ 113 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 277 bp overlap