chr18 : 50,398,965 50,399,883
918 bp 106 TFs 4 linked genes
This 918 bp open chromatin element is linked to 4 target genes and is bound by 106 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
SKA1 24.2 kb Distal Multiome
CXXC1 111.6 kb Distal Multiome
MBD1 117.7 kb Distal Multiome
MYO5B 204.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:50,393,965 – 50,404,883
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
106 transcription factors
Source
Cell type
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 283 bp overlap
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 246 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 272 bp overlap
Arid3b 2 datasets
Motif DE_48h DE_48h-Arid3b_MA0601.2 7 bp overlap
Motif DE_72h DE_72h-Arid3b_MA0601.2 7 bp overlap
BARX1 2 datasets
Motif DE_48h DE_48h-BARX1_MA0875.2 6 bp overlap
Motif DE_72h DE_72h-BARX1_MA0875.2 6 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 210 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 156 bp overlap
BRD3 1 dataset
ChIP K-562_DMSO-IFNG GSE138084.BRD3.K-562_DMSO-IFNG 201 bp overlap
BRD4 4 datasets
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 254 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 178 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 202 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 159 bp overlap
BSX 2 datasets
Motif DE_48h DE_48h-BSX_MA0876.2 6 bp overlap
Motif DE_72h DE_72h-BSX_MA0876.2 6 bp overlap
CCAR2 1 dataset
ChIP Hep-G2 ENCSR247XFV.CCAR2.Hep-G2 178 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 257 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 301 bp overlap
DLX1 2 datasets
Motif DE_48h DE_48h-DLX1_MA0879.3 6 bp overlap
Motif DE_72h DE_72h-DLX1_MA0879.3 6 bp overlap
DLX6 2 datasets
Motif DE_48h DE_48h-DLX6_MA0882.2 6 bp overlap
Motif DE_72h DE_72h-DLX6_MA0882.2 6 bp overlap
DUX4 2 datasets
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
Motif DE_72h DE_72h-DUX4_MA0468.1 11 bp overlap
Dlx2 2 datasets
Motif DE_48h DE_48h-Dlx2_MA0885.3 8 bp overlap
Motif DE_72h DE_72h-Dlx2_MA0885.3 8 bp overlap
Dlx3 2 datasets
Motif DE_48h DE_48h-Dlx3_MA0880.2 6 bp overlap
Motif DE_72h DE_72h-Dlx3_MA0880.2 6 bp overlap
Dlx4 2 datasets
Motif DE_48h DE_48h-Dlx4_MA0881.2 6 bp overlap
Motif DE_72h DE_72h-Dlx4_MA0881.2 6 bp overlap
Dlx5 2 datasets
Motif DE_48h DE_48h-Dlx5_MA1476.3 8 bp overlap
Motif DE_72h DE_72h-Dlx5_MA1476.3 8 bp overlap
EBF1 1 dataset
Motif DE_48h DE_48h-EBF1_MA0154.5 11 bp overlap
EZH2 1 dataset
ChIP H1 ENCFF232NZA 840 bp overlap
Ebf4 1 dataset
Motif DE_48h DE_48h-Ebf4_MA2122.1 11 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_ENOB-2849 GSE128018.FOXA1.breast-cancer_ENOB-2849 217 bp overlap
FOXA2 4 datasets
ChIP DE DE-FOXA2-1 379 bp overlap
ChIP DE DE-FOXA2-1 334 bp overlap
ChIP DE DE-FOXA2-2 419 bp overlap
ChIP DE DE-FOXA2-2 180 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 441 bp overlap
GATA1 2 datasets
ChIP K-562 GSE107726.GATA1.K-562 174 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 138 bp overlap
GATA2 6 datasets
ChIP SH-SY5Y ENCFF485YIB 236 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 322 bp overlap
ChIP SK-N-SH ENCFF764OZD 326 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 319 bp overlap
ChIP WA09 GSE105081.GATA2.WA09 151 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 203 bp overlap
GATA3 5 datasets
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 287 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 195 bp overlap
ChIP SH-SY5Y ENCFF475HYF 317 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 326 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 198 bp overlap
GATA4 7 datasets
ChIP DE DE-GATA4-1 417 bp overlap
ChIP DE DE-GATA4-1 252 bp overlap
ChIP DE DE-GATA4-2 918 bp overlap
ChIP foregut GSE117136.GATA4.foregut 295 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 321 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 489 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 142 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 351 bp overlap
ChIP DE DE-GATA6-1 396 bp overlap
ChIP DE DE-GATA6-2 918 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 542 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 286 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 918 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 372 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 106 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 396 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 585 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 137 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 423 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 302 bp overlap
GBX2 2 datasets
Motif DE_48h DE_48h-GBX2_MA0890.2 6 bp overlap
Motif DE_72h DE_72h-GBX2_MA0890.2 6 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 404 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 122 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 273 bp overlap
HESX1 2 datasets
Motif DE_48h DE_48h-HESX1_MA0894.2 6 bp overlap
Motif DE_72h DE_72h-HESX1_MA0894.2 6 bp overlap
HOXA6 2 datasets
Motif DE_48h DE_48h-HOXA6_MA1497.2 7 bp overlap
Motif DE_72h DE_72h-HOXA6_MA1497.2 7 bp overlap
HOXA7 2 datasets
Motif DE_48h DE_48h-HOXA7_MA1498.3 6 bp overlap
Motif DE_72h DE_72h-HOXA7_MA1498.3 6 bp overlap
HOXB6 2 datasets
Motif DE_48h DE_48h-HOXB6_MA1500.2 7 bp overlap
Motif DE_72h DE_72h-HOXB6_MA1500.2 7 bp overlap
HOXB7 2 datasets
Motif DE_48h DE_48h-HOXB7_MA1501.2 7 bp overlap
Motif DE_72h DE_72h-HOXB7_MA1501.2 7 bp overlap
HOXB8 2 datasets
Motif DE_48h DE_48h-HOXB8_MA1502.2 7 bp overlap
Motif DE_72h DE_72h-HOXB8_MA1502.2 7 bp overlap
HOXD8 2 datasets
Motif DE_48h DE_48h-HOXD8_MA0910.3 7 bp overlap
Motif DE_72h DE_72h-HOXD8_MA0910.3 7 bp overlap
HOXD9 2 datasets
Motif DE_48h DE_48h-HOXD9_MA0913.3 9 bp overlap
Motif DE_72h DE_72h-HOXD9_MA0913.3 9 bp overlap
Hmx1 4 datasets
Motif DE_48h DE_48h-Hmx1_MA0896.2 9 bp overlap
Motif DE_48h DE_48h-Hmx1_MA0896.2 9 bp overlap
Motif DE_72h DE_72h-Hmx1_MA0896.2 9 bp overlap
Motif DE_72h DE_72h-Hmx1_MA0896.2 9 bp overlap
Hmx2 2 datasets
Motif DE_48h DE_48h-Hmx2_MA0897.2 15 bp overlap
Motif DE_72h DE_72h-Hmx2_MA0897.2 15 bp overlap
Hmx3 4 datasets
Motif DE_48h DE_48h-Hmx3_MA0898.2 9 bp overlap
Motif DE_48h DE_48h-Hmx3_MA0898.2 9 bp overlap
Motif DE_72h DE_72h-Hmx3_MA0898.2 9 bp overlap
Motif DE_72h DE_72h-Hmx3_MA0898.2 9 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 263 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 270 bp overlap
Isl1 2 datasets
Motif DE_48h DE_48h-Isl1_MA1608.2 7 bp overlap
Motif DE_72h DE_72h-Isl1_MA1608.2 7 bp overlap
JUN 2 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 303 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 432 bp overlap
KDM1A 3 datasets
ChIP K-562 ENCSR360HRA.KDM1A.K-562 227 bp overlap
ChIP K-562 ENCSR908CMW.KDM1A.K-562 469 bp overlap
ChIP K-562 GSE117944.KDM1A.K-562 181 bp overlap
LBX2 2 datasets
Motif DE_48h DE_48h-LBX2_MA0699.2 6 bp overlap
Motif DE_72h DE_72h-LBX2_MA0699.2 6 bp overlap
LHX2 2 datasets
Motif DE_48h DE_48h-LHX2_MA0700.3 6 bp overlap
Motif DE_72h DE_72h-LHX2_MA0700.3 6 bp overlap
MAX 1 dataset
ChIP WTC11 ENCFF223QFY 553 bp overlap
MED1 2 datasets
ChIP HCT-116 GSE121798.MED1.HCT-116 398 bp overlap
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 374 bp overlap
MEIS1 1 dataset
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
MEIS3 1 dataset
Motif DE_48h DE_48h-MEIS3_MA0775.2 7 bp overlap
MSX1 2 datasets
Motif DE_48h DE_48h-MSX1_MA0666.3 6 bp overlap
Motif DE_72h DE_72h-MSX1_MA0666.3 6 bp overlap
MSX2 2 datasets
Motif DE_48h DE_48h-MSX2_MA0708.3 6 bp overlap
Motif DE_72h DE_72h-MSX2_MA0708.3 6 bp overlap
MXI1 2 datasets
Motif DE_48h DE_48h-MXI1_MA1108.3 6 bp overlap
Motif DE_72h DE_72h-MXI1_MA1108.3 6 bp overlap
MYB 2 datasets
Motif DE_48h DE_48h-MYB_MA0100.4 6 bp overlap
Motif DE_72h DE_72h-MYB_MA0100.4 6 bp overlap
MYC 1 dataset
ChIP NB69 GSE138295.MYC.NB69 238 bp overlap
MYCN 7 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 198 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 580 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 305 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 212 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 310 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 149 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 204 bp overlap
Msx3 2 datasets
Motif DE_48h DE_48h-Msx3_MA0709.2 6 bp overlap
Motif DE_72h DE_72h-Msx3_MA0709.2 6 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 248 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 335 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 303 bp overlap
NBN 1 dataset
ChIP MCF-10A GSE93038.NBN.MCF-10A 283 bp overlap
NFYA 1 dataset
Motif DE_72h DE_72h-NFYA_MA0060.4 8 bp overlap
NFYB 1 dataset
Motif DE_72h DE_72h-NFYB_MA0502.3 9 bp overlap
NFYC 1 dataset
Motif DE_72h DE_72h-NFYC_MA1644.2 7 bp overlap
Nobox 2 datasets
Motif DE_48h DE_48h-Nobox_MA0125.2 6 bp overlap
Motif DE_72h DE_72h-Nobox_MA0125.2 6 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 261 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 367 bp overlap
RARA 4 datasets
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 218 bp overlap
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 260 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 261 bp overlap
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 175 bp overlap
RAX 2 datasets
Motif DE_48h DE_48h-RAX_MA0718.2 6 bp overlap
Motif DE_72h DE_72h-RAX_MA0718.2 6 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 110 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 350 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 479 bp overlap
Rfx6 2 datasets
Motif DE_48h DE_48h-Rfx6_MA1724.2 9 bp overlap
Motif DE_72h DE_72h-Rfx6_MA1724.2 9 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 431 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 539 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 109 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 602 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 548 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 539 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 479 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 338 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 259 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 181 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 320 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 157 bp overlap
SUPT5H 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 202 bp overlap
TBX19 2 datasets
Motif DE_48h DE_48h-TBX19_MA0804.2 17 bp overlap
Motif DE_72h DE_72h-TBX19_MA0804.2 17 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 292 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 169 bp overlap
TBXT 2 datasets
Motif DE_48h DE_48h-TBXT_MA0009.2 16 bp overlap
Motif DE_72h DE_72h-TBXT_MA0009.2 16 bp overlap
TCF4 2 datasets
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 297 bp overlap
ChIP SK-N-SH ENCFF270OWF 371 bp overlap
TFAP2A 2 datasets
Motif DE_48h DE_48h-TFAP2A_MA0810.2 11 bp overlap
ChIP WA09 GSE105081.TFAP2A.WA09 239 bp overlap
TFAP2B 2 datasets
Motif DE_48h DE_48h-TFAP2B_MA0811.2 11 bp overlap
ChIP SK-N-SH ENCFF869XXQ 392 bp overlap
TFAP2C 6 datasets
Motif DE_48h DE_48h-TFAP2C_MA0524.3 11 bp overlap
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 152 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 792 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 410 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 237 bp overlap
ChIP WA09 GSE105081.TFAP2C.WA09 142 bp overlap
TFAP2E 1 dataset
Motif DE_48h DE_48h-TFAP2E_MA1569.2 9 bp overlap
THAP1 1 dataset
Motif DE_48h DE_48h-THAP1_MA0597.3 8 bp overlap
TOX2 1 dataset
ChIP SK-N-SH ENCFF415OYE 297 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 381 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 209 bp overlap
TWIST1 2 datasets
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 191 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 180 bp overlap
USF1 2 datasets
Motif DE_48h DE_48h-USF1_MA0093.4 10 bp overlap
Motif DE_72h DE_72h-USF1_MA0093.4 10 bp overlap
VENTX 2 datasets
Motif DE_48h DE_48h-VENTX_MA0724.1 9 bp overlap
Motif DE_72h DE_72h-VENTX_MA0724.1 9 bp overlap
YY1 2 datasets
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 146 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 208 bp overlap
ZIC4 2 datasets
Motif DE_48h DE_48h-ZIC4_MA0751.2 14 bp overlap
Motif DE_72h DE_72h-ZIC4_MA0751.2 14 bp overlap
ZIC5 2 datasets
Motif DE_48h DE_48h-ZIC5_MA1584.2 15 bp overlap
Motif DE_72h DE_72h-ZIC5_MA1584.2 15 bp overlap
ZNF300 1 dataset
ChIP HEK293T GSE78099.ZNF300.HEK293T 284 bp overlap
ZNF317 2 datasets
Motif DE_48h DE_48h-ZNF317_MA1593.2 8 bp overlap
ChIP HEK293 GSE76494.ZNF317.HEK293 137 bp overlap
ZNF574 1 dataset
ChIP HEK293 GSE76494.ZNF574.HEK293 163 bp overlap
ZNF677 1 dataset
Motif DE_48h DE_48h-ZNF677_MA2101.1 12 bp overlap
ZNF682 2 datasets
Motif DE_48h DE_48h-ZNF682_MA1599.2 11 bp overlap
Motif DE_72h DE_72h-ZNF682_MA1599.2 11 bp overlap
ZNF684 2 datasets
Motif DE_48h DE_48h-ZNF684_MA1600.2 14 bp overlap
Motif DE_72h DE_72h-ZNF684_MA1600.2 14 bp overlap
ZSCAN16 2 datasets
Motif DE_48h DE_48h-ZSCAN16_MA2100.1 18 bp overlap
Motif DE_72h DE_72h-ZSCAN16_MA2100.1 18 bp overlap