chr1 : 243,491,313 243,491,839
526 bp 83 TFs 2 linked genes
This 526 bp open chromatin element is linked to SDCCAG8 and CEP170 and is bound by 83 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
SDCCAG8 235.6 kb Distal Multiome
CEP170 236.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:243,486,313 – 243,496,839
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
83 transcription factors
Source
Cell type
AR 3 datasets
ChIP prostate_P13_T GSE130408.AR.prostate_P13_T 160 bp overlap
ChIP prostate_P27 GSE130408.AR.prostate_P27 262 bp overlap
ChIP prostate_P27_T GSE130408.AR.prostate_P27_T 116 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 367 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 466 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 260 bp overlap
BCL11A 1 dataset
Motif ES_0h ES_0h-BCL11A_MA2324.1 7 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 192 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 256 bp overlap
CHD7 1 dataset
ChIP H1 ENCFF126NLU 410 bp overlap
CREBBP 1 dataset
ChIP fibroblast_proliferating GSE106146.CREBBP.fibroblast_proliferating 232 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 405 bp overlap
CTCF 21 datasets
ChIP 22Rv1 ENCFF466OXN 164 bp overlap
ChIP CD14-positive monocyte ENCFF087XLR 126 bp overlap
ChIP CD14-positive monocyte ENCFF590KQU 67 bp overlap
ChIP Calu3 ENCFF526MDS 138 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 471 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 296 bp overlap
ChIP HFFc6 ENCFF005CJI 66 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 102 bp overlap
ChIP HeLa-S3 ENCFF255ASZ 62 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 65 bp overlap
ChIP RWPE2 ENCFF911IEE 190 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 86 bp overlap
ChIP SLK_RAD21-KD GSE138105.CTCF.SLK_RAD21-KD 69 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 103 bp overlap
ChIP THP-1_siNIPBL-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siNIPBL-eGFP-Pam3csk-4h 127 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 174 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 128 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 108 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 182 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 102 bp overlap
ChIP neural crest cell ENCFF182LWK 64 bp overlap
EP300 4 datasets
ChIP SK-N-SH ENCFF829RWA 241 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 194 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 270 bp overlap
ChIP fibroblast_proliferating GSE106146.EP300.fibroblast_proliferating 202 bp overlap
ETS1 1 dataset
ChIP GM23338 ENCFF701IZH 377 bp overlap
FOXC1 1 dataset
Motif ES_0h ES_0h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif ES_0h ES_0h-FOXC2_MA0846.2 11 bp overlap
FOXP2 1 dataset
Motif ES_0h ES_0h-FOXP2_MA0593.2 9 bp overlap
GATA2 2 datasets
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 184 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 203 bp overlap
GATA3 1 dataset
ChIP SK-N-SH ENCFF040SSB 187 bp overlap
GTF2I 1 dataset
ChIP WTC11 ENCFF255XXZ 217 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF939VKA 181 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 195 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 258 bp overlap
IKZF1 1 dataset
Motif ES_0h ES_0h-IKZF1_MA1508.2 8 bp overlap
IRF4 1 dataset
Motif ES_0h ES_0h-IRF4_MA1419.2 14 bp overlap
IRF8 1 dataset
Motif ES_0h ES_0h-IRF8_MA0652.2 13 bp overlap
IRF9 1 dataset
Motif ES_0h ES_0h-IRF9_MA0653.1 15 bp overlap
Irf1 1 dataset
Motif ES_0h ES_0h-Irf1_MA0050.4 11 bp overlap
JUN 1 dataset
ChIP ESC S34-ESC-d0-JUN-exp2 380 bp overlap
JUND 1 dataset
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 129 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 383 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 248 bp overlap
MED1 2 datasets
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 133 bp overlap
ChIP hMSC-TERT4_D3 GSE104537.MED1.hMSC-TERT4_D3 323 bp overlap
MEIS1 3 datasets
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MYB 1 dataset
Motif ES_0h ES_0h-MYB_MA0100.4 6 bp overlap
NANOG 5 datasets
ChIP GM23338 ENCFF065NZG 248 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 262 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 456 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 330 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 234 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 173 bp overlap
NFIC 1 dataset
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 230 bp overlap
NKX2-2 1 dataset
Motif ES_0h ES_0h-NKX2-2_MA1645.2 8 bp overlap
NR5A1 1 dataset
Motif ES_0h ES_0h-NR5A1_MA1540.3 12 bp overlap
POU5F1 10 datasets
ChIP GM23338 ENCFF333SNB 287 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 506 bp overlap
ChIP OSK GSE81899.POU5F1.OSK 342 bp overlap
ChIP OSKM GSE81899.POU5F1.OSKM 263 bp overlap
ChIP OSvKM GSE81899.POU5F1.OSvKM 197 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 226 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 293 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 265 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 283 bp overlap
ChIP hiPSC GSE149017.POU5F1.hiPSC 228 bp overlap
PRDM9 1 dataset
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
Prdm15 1 dataset
Motif ES_0h ES_0h-Prdm15_MA1616.2 11 bp overlap
RAD21 6 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 449 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 526 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 526 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 362 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 185 bp overlap
RBBP4 1 dataset
ChIP RH5 GSE155861.RBBP4.RH5 103 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 229 bp overlap
REST 1 dataset
ChIP hiPSC_IA12 GSE106870.REST.hiPSC_IA12 148 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 232 bp overlap
SIN3A 3 datasets
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 293 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 219 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 122 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 271 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 526 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 247 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 526 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 252 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 449 bp overlap
SOX2 2 datasets
ChIP OSKM GSE81899.SOX2.OSKM 242 bp overlap
ChIP OSvKM GSE81899.SOX2.OSvKM 296 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 319 bp overlap
STAT1 1 dataset
Motif ES_0h ES_0h-STAT1_MA0137.4 9 bp overlap
Stat2 2 datasets
Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap
Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap
Stat5a 1 dataset
Motif ES_0h ES_0h-Stat5a_MA1624.2 9 bp overlap
TBP 2 datasets
ChIP hESC GSE122298.TBP.hESC 233 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 160 bp overlap
TCF12 2 datasets
ChIP SK-N-SH ENCFF147AHB 173 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 258 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 220 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 301 bp overlap
TEAD1 1 dataset
ChIP adipocyte GSE140782.TEAD1.adipocyte 277 bp overlap
TEAD2 1 dataset
Motif ES_0h ES_0h-TEAD2_MA1121.2 7 bp overlap
TEAD4 5 datasets
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 172 bp overlap
Motif ES_0h ES_0h-TEAD4_MA0809.3 8 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 244 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 246 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 55 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 317 bp overlap
TGIF2 1 dataset
ChIP WTC11 ENCFF649SHI 236 bp overlap
THRA 1 dataset
Motif ES_0h ES_0h-THRA_MA1969.2 18 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 233 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 280 bp overlap
ZIM3 2 datasets
Motif ES_0h ES_0h-ZIM3_MA1709.2 11 bp overlap
Motif ES_0h ES_0h-ZIM3_MA1709.2 11 bp overlap
ZNF135 1 dataset
Motif ES_0h ES_0h-ZNF135_MA1587.1 14 bp overlap
ZNF24 1 dataset
ChIP GM12878 ENCSR072PWP.ZNF24.GM12878 157 bp overlap
ZNF257 1 dataset
Motif ES_0h ES_0h-ZNF257_MA1710.2 10 bp overlap
ZNF281 1 dataset
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF317 1 dataset
Motif ES_0h ES_0h-ZNF317_MA1593.2 8 bp overlap
ZNF324 1 dataset
Motif ES_0h ES_0h-ZNF324_MA1977.2 14 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF425 1 dataset
ChIP WTC11 ENCFF359IXT 93 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 430 bp overlap
ZNF582 1 dataset
Motif ES_0h ES_0h-ZNF582_MA1983.2 19 bp overlap
ZNF669 1 dataset
Motif ES_0h ES_0h-ZNF669_MA1985.1 15 bp overlap
ZNF768 3 datasets
Motif ES_0h ES_0h-ZNF768_MA1731.2 9 bp overlap
Motif ES_0h ES_0h-ZNF768_MA1731.2 9 bp overlap
Motif ES_0h ES_0h-ZNF768_MA1731.2 9 bp overlap
Zfp335 1 dataset
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap