chr13 : 106,532,527 – 106,532,831
304 bp 73 TFs 1 linked gene
This 304 bp open chromatin element is linked to EFNB2 and is bound by 73 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
EFNB2 2.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:106,527,527 – 106,537,831
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
73 transcription factors
Source
Cell type
AR 3 datasets
ChIP LNCaP_DHT24H GSE58428.AR.LNCaP_DHT24H 122 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 106 bp overlap
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 163 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 284 bp overlap
BAF155 1 dataset
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 205 bp overlap
BCOR 3 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 189 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 144 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 264 bp overlap
BRD1 1 dataset
ChIP RKO GSE47190.BRD1.RKO 191 bp overlap
BRD2 2 datasets
ChIP MDA-MB-231_DMSO GSE116879.BRD2.MDA-MB-231_DMSO 304 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD2.MDA-MB-231_DMSO_rDNA 304 bp overlap
BRD4 13 datasets
ChIP BE2C GSE80151.BRD4.BE2C 271 bp overlap
ChIP HT29 GSE73319.BRD4.HT29 89 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 200 bp overlap
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 110 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.BRD4.MCF-7_ARID1A-KO_4-OHT 248 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 219 bp overlap
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 304 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 271 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 304 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 240 bp overlap
ChIP SUM229PE_neg_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_neg_30nMtrametinib_24h 63 bp overlap
ChIP retina_AB1-FW13 GSE86981.BRD4.retina_AB1-FW13 276 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 304 bp overlap
CDK9 1 dataset
ChIP Kelly_CYC065 GSE107126.CDK9.Kelly_CYC065 143 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 188 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 168 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 233 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 91 bp overlap
CTCF 2 datasets
ChIP CD14-positive monocyte ENCFF087XLR 55 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 139 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 138 bp overlap
ESR1 1 dataset
ChIP breast_tumor_Male_13 GSE104399.ESR1.breast_tumor_Male_13 304 bp overlap
ESR1_pS118 1 dataset
ChIP MCF-7_E2_sc GSE117569.ESR1_pS118.MCF-7_E2_sc 304 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 242 bp overlap
ETS1 3 datasets
ChIP HUVEC-C_4h GSE93030.ETS1.HUVEC-C_4h 226 bp overlap
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 200 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.ETS1.HUVEC-C_VEGF_4h 226 bp overlap
EZH2 2 datasets
ChIP B cell ENCFF803EMO 177 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 193 bp overlap
EZH2_phosphoT487 1 dataset
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 304 bp overlap
FOXA1 2 datasets
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 304 bp overlap
ChIP breast_tumor_Male_13 GSE104399.FOXA1.breast_tumor_Male_13 249 bp overlap
GATA2 5 datasets
ChIP SH-SY5Y ENCFF485YIB 132 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 304 bp overlap
ChIP SK-N-SH ENCFF764OZD 304 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 285 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 189 bp overlap
GATA3 5 datasets
ChIP BE2C GSE65664.GATA3.BE2C 160 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 192 bp overlap
ChIP SH-SY5Y ENCFF475HYF 289 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 230 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 233 bp overlap
GATA4 3 datasets
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 148 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 304 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 304 bp overlap
GATA6 3 datasets
ChIP DE_D2 S55-DE-d2-GATA6-exp2 85 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 296 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 218 bp overlap
GLIS2 2 datasets
ChIP HEK293 ENCFF446EIF 209 bp overlap
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 148 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 304 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 304 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 205 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 255 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 211 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 292 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 195 bp overlap
JUN 1 dataset
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 136 bp overlap
KMT2A 2 datasets
ChIP HEK293T_C-term_C49 GSE90762.KMT2A.HEK293T_C-term_C49 274 bp overlap
ChIP HEK293T_C-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_C-term_shCtrl_TASP1-KO 117 bp overlap
MED1 1 dataset
ChIP U-87MG GSE36354.MED1.U-87MG 304 bp overlap
MEN1 3 datasets
ChIP MCF-7 GSE85317.MEN1.MCF-7 146 bp overlap
ChIP MCF-7_E2 GSE85317.MEN1.MCF-7_E2 141 bp overlap
ChIP PC-3 GSE132827.MEN1.PC-3 52 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 149 bp overlap
ChIP neural cell ENCFF623HQN 148 bp overlap
MYCN 7 datasets
ChIP BE2C GSE80151.MYCN.BE2C 214 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 304 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 163 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 183 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 277 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 290 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 214 bp overlap
NR1H2 1 dataset
ChIP HT29_GW3965_48H GSE77039.NR1H2.HT29_GW3965_48H 149 bp overlap
NR3C1 1 dataset
ChIP T-47D GSE126859.NR3C1.T-47D 180 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 77 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 292 bp overlap
PATZ1 2 datasets
ChIP HEK293 ENCFF016MNJ 176 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 129 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 281 bp overlap
ChIP HCT-116_MLL4-SET-KO_ab833 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab833 276 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 304 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 179 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 304 bp overlap
POLR2A 2 datasets
ChIP neural cell ENCFF604SPB 304 bp overlap
ChIP neural cell ENCFF604SPB 137 bp overlap
RAD21 10 datasets
ChIP HCT-116 GSE131606.RAD21.HCT-116 253 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.RAD21.HCT-116_RAD21-mAC 213 bp overlap
ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 302 bp overlap
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 229 bp overlap
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 286 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 70 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 213 bp overlap
ChIP SK-N-SH ENCFF747MAS 251 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 304 bp overlap
ChIP neural cell ENCFF564MOT 304 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 182 bp overlap
RCOR1 3 datasets
ChIP SK-N-SH ENCFF518EXB 304 bp overlap
ChIP SK-N-SH ENCFF518EXB 105 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 263 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 268 bp overlap
RNF2 1 dataset
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 304 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 173 bp overlap
SFPQ 1 dataset
ChIP LTAD_EtOH GSE94577.SFPQ.LTAD_EtOH 219 bp overlap
SIN3A 1 dataset
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 162 bp overlap
SMAD3 1 dataset
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 195 bp overlap
SMARCA4 2 datasets
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 202 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 86 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 58 bp overlap
SMC1 2 datasets
ChIP DKO GSE131606.SMC1.DKO 56 bp overlap
ChIP HCT-116 GSE131606.SMC1.HCT-116 109 bp overlap
SMC3 2 datasets
ChIP IMR-90 ENCSR000HPG.SMC3.IMR-90 121 bp overlap
ChIP neural cell ENCFF795YGY 210 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 128 bp overlap
STAG1 3 datasets
ChIP HCAEC GSE101921.STAG1.HCAEC 160 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 293 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 108 bp overlap
SUZ12 3 datasets
ChIP GM12878 ENCFF498QAM 70 bp overlap
ChIP GM12878 ENCFF498QAM 285 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 82 bp overlap
TP63 1 dataset
ChIP SUIT-2 GSE115461.TP63.SUIT-2 203 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 207 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 207 bp overlap
ZEB1 1 dataset
ChIP RKO GSE88734.ZEB1.RKO 184 bp overlap
ZEB2 2 datasets
ChIP HEK293 ENCFF847JIE 304 bp overlap
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 241 bp overlap
ZFP69B 1 dataset
ChIP HEK293T GSE78099.ZFP69B.HEK293T 304 bp overlap
ZKSCAN2 1 dataset
ChIP HEK293T GSE78099.ZKSCAN2.HEK293T 219 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 181 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 279 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 234 bp overlap
ZNF513 2 datasets
ChIP HEK293 ENCFF457TCC 107 bp overlap
ChIP HEK293 ENCSR503DPC.ZNF513.HEK293 188 bp overlap
ZNF561 1 dataset
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 304 bp overlap
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