chr13 : 55,566,427 55,569,780
3,353 bp 116 TFs 0 linked genes
This 3.4 kb open chromatin element has no linked target genes and is bound by 116 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:55,561,427 – 55,574,780
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
116 transcription factors
Source
Cell type
AR 5 datasets
ChIP 22Rv1_siARFL_R1881 GSE80742.AR.22Rv1_siARFL_R1881 356 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 175 bp overlap
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 230 bp overlap
ChIP WTC11 ENCFF267GQJ 317 bp overlap
ChIP WTC11 ENCFF267GQJ 317 bp overlap
ATF2 8 datasets
ChIP H1 ENCFF295GZO 571 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 479 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 162 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 259 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 206 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 504 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 359 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 194 bp overlap
ATF6 1 dataset
Motif ES_0h ES_0h-ATF6_MA1466.2 13 bp overlap
BRD4 3 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 216 bp overlap
ChIP MV4-11_IBET_SGC GSE71776.BRD4.MV4-11_IBET_SGC 183 bp overlap
ChIP MV4-11_SGC GSE71776.BRD4.MV4-11_SGC 210 bp overlap
CDK8 1 dataset
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 271 bp overlap
CEBPA 7 datasets
ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 218 bp overlap
ChIP THP-1_1-25D_24h GSE124032.CEBPA.THP-1_1-25D_24h 302 bp overlap
ChIP THP-1_1-25D_2h GSE124032.CEBPA.THP-1_1-25D_2h 403 bp overlap
ChIP THP-1_1-25D_8h GSE124032.CEBPA.THP-1_1-25D_8h 377 bp overlap
ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 345 bp overlap
ChIP THP-1_EtOH_2h GSE124032.CEBPA.THP-1_EtOH_2h 342 bp overlap
ChIP THP-1_EtOH_8h GSE124032.CEBPA.THP-1_EtOH_8h 396 bp overlap
CEBPB 6 datasets
ChIP HL-60_CEBPB_overexpressed GSE100486.CEBPB.HL-60_CEBPB_overexpressed 102 bp overlap
ChIP THP-1_NS1-Pam3csk-0h GSE103477.CEBPB.THP-1_NS1-Pam3csk-0h 270 bp overlap
ChIP THP-1_NS1-Pam3csk-4h GSE103477.CEBPB.THP-1_NS1-Pam3csk-4h 287 bp overlap
ChIP THP-1_eGFP-Pam3csk-0h GSE103477.CEBPB.THP-1_eGFP-Pam3csk-0h 276 bp overlap
ChIP THP-1_eGFP-Pam3csk-4h GSE103477.CEBPB.THP-1_eGFP-Pam3csk-4h 300 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 203 bp overlap
CHD1 5 datasets
ChIP WA01 ENCSR000AQK.CHD1.WA01 239 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 159 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 229 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 417 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 399 bp overlap
CHD2 1 dataset
ChIP WA01 ENCSR000EBT.CHD2.WA01 120 bp overlap
CHD7 1 dataset
ChIP H1 ENCFF126NLU 597 bp overlap
CTCF 3 datasets
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 244 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 151 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 232 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF093OYK 276 bp overlap
ChIP BLaER1 ENCFF798NMV 358 bp overlap
ChIP BLaER1 ENCFF896HSY 260 bp overlap
DMRTA2 1 dataset
Motif ES_0h ES_0h-DMRTA2_MA1478.2 6 bp overlap
DUX4 1 dataset
Motif ES_0h ES_0h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif ES_0h ES_0h-DUXA_MA0884.2 13 bp overlap
Dux 1 dataset
Motif ES_0h ES_0h-Dux_MA0611.3 11 bp overlap
EMX1 4 datasets
ChIP WTC11 ENCFF692RZJ 256 bp overlap
ChIP WTC11 ENCFF692RZJ 605 bp overlap
ChIP WTC11 ENCFF692RZJ 237 bp overlap
ChIP WTC11 ENCFF692RZJ 357 bp overlap
ERG 4 datasets
ChIP WTC11 ENCFF011YUL 281 bp overlap
ChIP WTC11 ENCFF011YUL 281 bp overlap
ChIP WTC11 ENCFF011YUL 281 bp overlap
ChIP WTC11 ENCFF011YUL 281 bp overlap
Elf5 1 dataset
Motif ES_0h ES_0h-Elf5_MA0136.4 8 bp overlap
FEZF2 1 dataset
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
FOXA1 10 datasets
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 250 bp overlap
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 264 bp overlap
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 334 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 161 bp overlap
ChIP MCF-7 ENCFF465LTH 391 bp overlap
ChIP MCF-7 ENCSR126YEB.FOXA1.MCF-7 279 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 185 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 197 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 181 bp overlap
ChIP T47D-A1-2_Dex GSE112491.FOXA1.T47D-A1-2_Dex 148 bp overlap
Foxl2 1 dataset
Motif ES_0h ES_0h-Foxl2_MA1607.2 10 bp overlap
GATA1 1 dataset
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 124 bp overlap
GCM1 1 dataset
Motif ES_0h ES_0h-GCM1_MA0646.2 10 bp overlap
GCM2 1 dataset
Motif ES_0h ES_0h-GCM2_MA0767.2 8 bp overlap
GRHL1 1 dataset
Motif ES_0h ES_0h-GRHL1_MA0647.2 10 bp overlap
GRHL2 1 dataset
Motif ES_0h ES_0h-GRHL2_MA1105.3 8 bp overlap
HMGA1 2 datasets
ChIP IMR-90_RAS-induced GSE111841.HMGA1.IMR-90_RAS-induced 258 bp overlap
ChIP IMR-90_ctrl GSE111841.HMGA1.IMR-90_ctrl 139 bp overlap
Hmga1 1 dataset
Motif ES_0h ES_0h-Hmga1_MA2124.1 8 bp overlap
IKZF2 1 dataset
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
IRF8 1 dataset
ChIP THP-1 GSE123872.IRF8.THP-1 197 bp overlap
JUND 3 datasets
ChIP WA01 ENCSR000BKP.JUND.WA01 108 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 94 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 94 bp overlap
KMT2A 1 dataset
ChIP MOLM-13_VTP-d3-180110 GSE127507.KMT2A.MOLM-13_VTP-d3-180110 285 bp overlap
KMT2B 1 dataset
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 384 bp overlap
LIN54 1 dataset
Motif ES_0h ES_0h-LIN54_MA0619.2 7 bp overlap
Lef1 1 dataset
Motif ES_0h ES_0h-Lef1_MA0768.3 8 bp overlap
Lhx3 1 dataset
Motif ES_0h ES_0h-Lhx3_MA0135.2 12 bp overlap
MEIS1 2 datasets
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif ES_0h ES_0h-MEIS2_MA0774.1 8 bp overlap
MEIS3 1 dataset
Motif ES_0h ES_0h-MEIS3_MA0775.2 7 bp overlap
MORC2 3 datasets
ChIP H9 GSE95374.MORC2.H9 1273 bp overlap
ChIP H9 GSE95374.MORC2.H9 575 bp overlap
ChIP H9 GSE95374.MORC2.H9 315 bp overlap
MYB 2 datasets
ChIP THP-1 GSE90769.MYB.THP-1 216 bp overlap
ChIP THP-1_OG86 GSE90769.MYB.THP-1_OG86 259 bp overlap
NANOG 1 dataset
ChIP WA09 GSE105028.NANOG.WA09 146 bp overlap
NCOR2 1 dataset
ChIP LS180 GSE39277.NCOR2.LS180 100 bp overlap
NFATC4 4 datasets
ChIP WTC11 ENCFF744MZI 271 bp overlap
ChIP WTC11 ENCFF744MZI 271 bp overlap
ChIP WTC11 ENCFF744MZI 271 bp overlap
ChIP WTC11 ENCFF744MZI 200 bp overlap
NFIA 1 dataset
Motif ES_0h ES_0h-NFIA_MA0670.2 6 bp overlap
NFIC 1 dataset
Motif ES_0h ES_0h-NFIC_MA1527.2 15 bp overlap
NFIX 2 datasets
Motif ES_0h ES_0h-NFIX_MA0671.2 6 bp overlap
Motif ES_0h ES_0h-NFIX_MA1528.2 14 bp overlap
NR1D1 1 dataset
Motif ES_0h ES_0h-NR1D1_MA1531.2 14 bp overlap
NR1D2 1 dataset
Motif ES_0h ES_0h-NR1D2_MA1532.2 15 bp overlap
NR2C1 1 dataset
Motif ES_0h ES_0h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif ES_0h ES_0h-NR2C2_MA1536.2 6 bp overlap
NR5A1 3 datasets
ChIP hESC GSE101087.NR5A1.hESC 337 bp overlap
ChIP hESC GSE101087.NR5A1.hESC 412 bp overlap
ChIP hESC GSE101087.NR5A1.hESC 144 bp overlap
Nr1H2 1 dataset
Motif ES_0h ES_0h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif ES_0h ES_0h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif ES_0h ES_0h-Nr1h3_MA2337.1 6 bp overlap
Nr2F6 1 dataset
Motif ES_0h ES_0h-Nr2F6_MA0728.1 15 bp overlap
OGT 1 dataset
ChIP PC-3_OSMI-2 GSE112667.OGT.PC-3_OSMI-2 483 bp overlap
PBX1 1 dataset
Motif ES_0h ES_0h-PBX1_MA0070.2 9 bp overlap
PGR 5 datasets
ChIP T-47D GSE31129.PGR.T-47D 283 bp overlap
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 181 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 233 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 161 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 288 bp overlap
PHOX2A 1 dataset
Motif ES_0h ES_0h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 4 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 131 bp overlap
Motif ES_0h ES_0h-PHOX2B_MA0681.3 12 bp overlap
Motif ES_0h ES_0h-PHOX2B_MA0681.3 12 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 177 bp overlap
POLR2A 17 datasets
ChIP GM23338 ENCFF450WCS 293 bp overlap
ChIP GM23338 ENCFF450WCS 491 bp overlap
ChIP GM23338 ENCFF450WCS 491 bp overlap
ChIP GM23338 ENCFF450WCS 491 bp overlap
ChIP GM23338 ENCFF450WCS 363 bp overlap
ChIP GM23338 ENCFF450WCS 55 bp overlap
ChIP H1 ENCFF566JSR 337 bp overlap
ChIP H1 ENCFF566JSR 631 bp overlap
ChIP H1 ENCFF566JSR 277 bp overlap
ChIP H1 ENCFF566JSR 255 bp overlap
ChIP H1 ENCFF566JSR 397 bp overlap
ChIP H1 ENCFF770YBQ 471 bp overlap
ChIP H1 ENCFF770YBQ 471 bp overlap
ChIP H1 ENCFF770YBQ 471 bp overlap
ChIP H1 ENCFF833NJP 282 bp overlap
ChIP H1 ENCFF833NJP 411 bp overlap
ChIP H1 ENCFF833NJP 411 bp overlap
POU3F1 1 dataset
ChIP SKM-1_D2 GSE93706.POU3F1.SKM-1_D2 78 bp overlap
POU3F3 1 dataset
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
PRDM1 1 dataset
Motif ES_0h ES_0h-PRDM1_MA0508.4 7 bp overlap
PRDM9 1 dataset
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
PROP1 1 dataset
Motif ES_0h ES_0h-PROP1_MA0715.1 11 bp overlap
PRRX2 4 datasets
ChIP WTC11 ENCFF107JGJ 110 bp overlap
ChIP WTC11 ENCFF107JGJ 301 bp overlap
ChIP WTC11 ENCFF107JGJ 301 bp overlap
ChIP WTC11 ENCFF107JGJ 231 bp overlap
Prdm14 1 dataset
Motif ES_0h ES_0h-Prdm14_MA1998.2 8 bp overlap
Prdm15 1 dataset
Motif ES_0h ES_0h-Prdm15_MA1616.2 11 bp overlap
RAD21 4 datasets
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-020m-Flavo-000m 277 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.RAD21.THP-1_Pam3csk-150m-Flavo-030m 223 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 206 bp overlap
ChIP THP-1_eGFP-IFNb GSE103477.RAD21.THP-1_eGFP-IFNb 271 bp overlap
RARA 2 datasets
Motif ES_0h ES_0h-RARA_MA0729.1 18 bp overlap
Motif ES_0h ES_0h-RARA_MA0730.1 17 bp overlap
RFX7 1 dataset
Motif ES_0h ES_0h-RFX7_MA1554.2 8 bp overlap
Rarb 2 datasets
Motif ES_0h ES_0h-Rarb_MA0857.1 16 bp overlap
Motif ES_0h ES_0h-Rarb_MA0858.1 17 bp overlap
Rarg 1 dataset
Motif ES_0h ES_0h-Rarg_MA0859.2 15 bp overlap
SATB1 2 datasets
ChIP MCF-10A_ICRF GSE123292.SATB1.MCF-10A_ICRF 120 bp overlap
ChIP MCF-10A_dHD GSE123292.SATB1.MCF-10A_dHD 172 bp overlap
SIX1 1 dataset
Motif ES_0h ES_0h-SIX1_MA1118.2 9 bp overlap
SIX2 1 dataset
Motif ES_0h ES_0h-SIX2_MA1119.2 11 bp overlap
SP4 5 datasets
ChIP WA01 ENCSR000BQV.SP4.WA01 143 bp overlap
ChIP WA01 ENCSR000BQV.SP4.WA01 160 bp overlap
ChIP WA01 ENCSR000BQV.SP4.WA01 232 bp overlap
ChIP WA01 ENCSR000BQV.SP4.WA01 208 bp overlap
ChIP WA01 ENCSR000BQV.SP4.WA01 157 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SPI1 2 datasets
ChIP EM-3 GSE128834.SPI1.EM-3 186 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 163 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 138 bp overlap
Six4 1 dataset
Motif ES_0h ES_0h-Six4_MA2001.2 7 bp overlap
Stat6 2 datasets
Motif ES_0h ES_0h-Stat6_MA0520.2 10 bp overlap
Motif ES_0h ES_0h-Stat6_MA0520.2 10 bp overlap
TBP 3 datasets
Motif ES_0h ES_0h-TBP_MA0108.3 7 bp overlap
Motif ES_0h ES_0h-TBP_MA0108.3 7 bp overlap
ChIP H1 ENCFF859IIO 377 bp overlap
TCF7 1 dataset
Motif ES_0h ES_0h-TCF7_MA0769.3 7 bp overlap
TEF 1 dataset
Motif ES_0h ES_0h-TEF_MA0843.2 10 bp overlap
TFCP2 1 dataset
Motif ES_0h ES_0h-TFCP2_MA1968.2 9 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 370 bp overlap
TRIM24 2 datasets
ChIP MOLM-13_IACS-9571 GSE100571.TRIM24.MOLM-13_IACS-9571 194 bp overlap
ChIP MOLM-13_dTRIM24 GSE100571.TRIM24.MOLM-13_dTRIM24 221 bp overlap
ZMAT4 3 datasets
ChIP WTC11 ENCFF608UXZ 241 bp overlap
ChIP WTC11 ENCFF608UXZ 241 bp overlap
ChIP WTC11 ENCFF608UXZ 202 bp overlap
ZNF143 2 datasets
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 650 bp overlap
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 559 bp overlap
ZNF157 1 dataset
Motif ES_0h ES_0h-ZNF157_MA2331.1 21 bp overlap
ZNF257 1 dataset
ChIP HEK293T GSE78099.ZNF257.HEK293T 123 bp overlap
ZNF35 1 dataset
Motif ES_0h ES_0h-ZNF35_MA2333.1 7 bp overlap
ZNF416 4 datasets
Motif ES_0h ES_0h-ZNF416_MA1979.2 10 bp overlap
ChIP WTC11 ENCFF407TAZ 271 bp overlap
ChIP WTC11 ENCFF407TAZ 271 bp overlap
ChIP WTC11 ENCFF407TAZ 271 bp overlap
ZNF425 5 datasets
ChIP WTC11 ENCFF359IXT 301 bp overlap
ChIP WTC11 ENCFF359IXT 301 bp overlap
ChIP WTC11 ENCFF359IXT 85 bp overlap
ChIP WTC11 ENCFF359IXT 301 bp overlap
ChIP WTC11 ENCFF359IXT 164 bp overlap
ZNF532 5 datasets
ChIP WTC11 ENCFF373VBX 285 bp overlap
ChIP WTC11 ENCFF373VBX 285 bp overlap
ChIP WTC11 ENCFF373VBX 285 bp overlap
ChIP WTC11 ENCFF373VBX 285 bp overlap
ChIP WTC11 ENCFF373VBX 285 bp overlap
ZNF558 1 dataset
Motif ES_0h ES_0h-ZNF558_MA2335.1 29 bp overlap
ZNF582 1 dataset
Motif ES_0h ES_0h-ZNF582_MA1983.2 19 bp overlap
ZNF671 3 datasets
ChIP WTC11 ENCFF053HBV 265 bp overlap
ChIP WTC11 ENCFF053HBV 265 bp overlap
ChIP WTC11 ENCFF053HBV 265 bp overlap
ZNF677 1 dataset
Motif ES_0h ES_0h-ZNF677_MA2101.1 12 bp overlap
Zic2 1 dataset
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap