chr12 : 106,601,068 106,601,308
240 bp 80 TFs 1 linked gene
This 240 bp open chromatin element is linked to RFX4 and is bound by 80 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
RFX4 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:106,596,068 – 106,606,308
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
80 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 161 bp overlap
ARNTL 1 dataset
ChIP GSC_387 GSE134972.ARNTL.GSC_387 173 bp overlap
ATF1 1 dataset
ChIP HCT-116 GSE130477.ATF1.HCT-116 50 bp overlap
BMI1 2 datasets
ChIP K-562 ENCSR782WRO.BMI1.K-562 166 bp overlap
ChIP MCF-7 ENCSR966YYJ.BMI1.MCF-7 240 bp overlap
BRD4 2 datasets
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 178 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
CBFB 1 dataset
ChIP WTC11 ENCFF113HIY 240 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 188 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 231 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 181 bp overlap
COMMD3-BMI1,BMI1 1 dataset
ChIP MCF-7 ENCFF570JPP 240 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 111 bp overlap
CSDE1 1 dataset
ChIP K562 ENCFF313FYC 240 bp overlap
CTCF 40 datasets
ChIP GM23338 ENCFF772DML 174 bp overlap
ChIP H1 ENCFF414GZI 180 bp overlap
ChIP H1 ENCFF764RHO 218 bp overlap
ChIP H9 ENCFF152GTF 240 bp overlap
ChIP H9 ENCFF152GTF 70 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 117 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 158 bp overlap
ChIP HepG2 ENCFF757EKU 240 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 188 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 175 bp overlap
ChIP K-562 ENCSR000EGM.CTCF.K-562 111 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 145 bp overlap
ChIP K-562_11698 GSE131349.CTCF.K-562_11698 114 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 101 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 98 bp overlap
ChIP K562 ENCFF082GOI 167 bp overlap
ChIP K562 ENCFF111MGE 210 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 199 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 180 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 154 bp overlap
ChIP Kelly_shB4-res GSE115248.CTCF.Kelly_shB4-res 146 bp overlap
ChIP MCF-7 ENCFF198DQX 195 bp overlap
ChIP MCF-7 ENCFF494VXA 195 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 211 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 154 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 240 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 143 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 174 bp overlap
ChIP endodermal cell ENCFF471YCZ 240 bp overlap
ChIP glioblastoma_GBM3565 GSE139416.CTCF.glioblastoma_GBM3565 240 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 217 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 163 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 130 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 137 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 187 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 175 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 154 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 211 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 119 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 177 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 240 bp overlap
E2F1 1 dataset
ChIP LNCaP_shRB GSE94958.E2F1.LNCaP_shRB 195 bp overlap
ELF1 4 datasets
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 136 bp overlap
ChIP Hep-G2 ENCSR321VGW.ELF1.Hep-G2 185 bp overlap
ChIP K-562 ENCSR000BMD.ELF1.K-562 143 bp overlap
ChIP K562 ENCFF496AKI 217 bp overlap
ESR1 9 datasets
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 240 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 240 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 240 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 240 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 240 bp overlap
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 240 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 189 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 170 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 227 bp overlap
FOXA1 2 datasets
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 111 bp overlap
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 189 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 182 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 240 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 240 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 240 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 165 bp overlap
KDM5B 2 datasets
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 236 bp overlap
ChIP T-47D GSE46055.KDM5B.T-47D 113 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 187 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 191 bp overlap
MED1 2 datasets
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 93 bp overlap
ChIP dopaminergic-neuron_Dopamine_neurons GSE93905.MED1.dopaminergic-neuron_Dopamine_neurons 139 bp overlap
MYCN 2 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 180 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 178 bp overlap
NCOR1 1 dataset
ChIP HEK293T_SICTR GSE35197.NCOR1.HEK293T_SICTR 110 bp overlap
NFATC3 1 dataset
ChIP Hep-G2 GSE97661.NFATC3.Hep-G2 117 bp overlap
NFKB1 2 datasets
ChIP HEK293T GSE129618.NFKB1.HEK293T 192 bp overlap
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 193 bp overlap
NFKBIA 1 dataset
ChIP dermal GSE30082.NFKBIA.dermal 123 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 207 bp overlap
OGG1 1 dataset
ChIP HEK293 GSE89017.OGG1.HEK293 135 bp overlap
ONECUT1 3 datasets
ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 82 bp overlap
ChIP HepG2 ENCFF243FIR 158 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 145 bp overlap
OSR2 1 dataset
ChIP HEK293 GSE76494.OSR2.HEK293 214 bp overlap
PCBP1 1 dataset
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 208 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 206 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 218 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 207 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 214 bp overlap
PPARG 1 dataset
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 181 bp overlap
RAD21 22 datasets
ChIP H1 ENCFF698EWO 215 bp overlap
ChIP H1 ENCFF967OJF 205 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 225 bp overlap
ChIP Hep-G2 ENCSR054FKH.RAD21.Hep-G2 149 bp overlap
ChIP Hep-G2 ENCSR000EEG.RAD21.Hep-G2 122 bp overlap
ChIP HepG2 ENCFF360ZSW 189 bp overlap
ChIP IMR-5 GSE78957.RAD21.IMR-5 195 bp overlap
ChIP Ishikawa ENCFF570JVV 193 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 155 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 92 bp overlap
ChIP K562 ENCFF169SQI 170 bp overlap
ChIP K562 ENCFF634XYR 227 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 121 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 224 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 186 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 171 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 155 bp overlap
ChIP hiPSC_IIA11 GSE106870.RAD21.hiPSC_IIA11 99 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 232 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 193 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 172 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 240 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 210 bp overlap
RBM39 2 datasets
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 106 bp overlap
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 97 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 240 bp overlap
RFX1 10 datasets
ChIP Hep-G2 ENCSR928API.RFX1.Hep-G2 223 bp overlap
ChIP HepG2 ENCFF144SCF 113 bp overlap
ChIP K-562 ENCSR968GIB.RFX1.K-562 240 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 240 bp overlap
ChIP K562 ENCFF421AVO 240 bp overlap
ChIP K562 ENCFF809XVG 240 bp overlap
ChIP MCF-7 ENCFF782EZS 240 bp overlap
ChIP MCF-7 ENCFF973QAD 240 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 240 bp overlap
ChIP MCF-7 ENCSR788XNX.RFX1.MCF-7 240 bp overlap
RFX3 2 datasets
ChIP Hep-G2 ENCSR633OVO.RFX3.Hep-G2 213 bp overlap
ChIP HepG2 ENCFF681ZHO 240 bp overlap
RFX5 1 dataset
ChIP Hep-G2 ENCSR000EEA.RFX5.Hep-G2 133 bp overlap
RNF2 1 dataset
ChIP WA01 GSE104690.RNF2.WA01 198 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 199 bp overlap
SIN3A 3 datasets
ChIP WA01 ENCSR000EBO.SIN3A.WA01 129 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 176 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 220 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 197 bp overlap
SMARCA4 2 datasets
ChIP NSC GSE125033.SMARCA4.NSC 240 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 240 bp overlap
SMARCC1 1 dataset
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 200 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 111 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 235 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 149 bp overlap
SPI1 1 dataset
ChIP macrophage_IFNG GSE47188.SPI1.macrophage_IFNG 166 bp overlap
STAG1 3 datasets
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 157 bp overlap
ChIP Hep-G2 ERP000209.STAG1.Hep-G2 157 bp overlap
ChIP HepG2 ENCFF843EBZ 240 bp overlap
STAT3 6 datasets
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 181 bp overlap
ChIP T-47D_JC4753 GSE126004.STAT3.T-47D_JC4753 69 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 150 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 189 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 159 bp overlap
ChIP WA01 ERP004237.STAT3.WA01 240 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 240 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 225 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 240 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 240 bp overlap
TFAP4 1 dataset
ChIP Hep-G2 ENCSR103SZL.TFAP4.Hep-G2 134 bp overlap
TFE3 1 dataset
ChIP Hep-G2 ENCSR589SNT.TFE3.Hep-G2 158 bp overlap
THAP1 1 dataset
ChIP K-562 ENCSR000BNN.THAP1.K-562 125 bp overlap
THRB 2 datasets
ChIP Hep-G2 ENCSR430JGJ.THRB.Hep-G2 198 bp overlap
ChIP HepG2 ENCFF476INC 240 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 240 bp overlap
U2AF2 1 dataset
ChIP Hep-G2 GSE120104.U2AF2.Hep-G2 188 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 116 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 240 bp overlap
ZNF143 6 datasets
ChIP Hep-G2 ENCSR080UEM.ZNF143.Hep-G2 187 bp overlap
ChIP MCF-7 GSE76454.ZNF143.MCF-7 136 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 147 bp overlap
ChIP WA01 ENCSR000EBW.ZNF143.WA01 180 bp overlap
ChIP WA09 GSE105028.ZNF143.WA09 169 bp overlap
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 172 bp overlap
ZNF316 2 datasets
ChIP K-562 ENCSR200JYP.ZNF316.K-562 118 bp overlap
ChIP K562 ENCFF281INV 77 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 240 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 240 bp overlap