chr12 : 16,604,773 – 16,605,201
428 bp 88 TFs 1 linked gene
This 428 bp open chromatin element is linked to LMO3 and is bound by 88 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LMO3 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:16,599,773 – 16,610,201
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
AR 2 datasets
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 228 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 427 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 68 bp overlap
ARRB1 1 dataset
ChIP prostate GSE55615.ARRB1.prostate 135 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 428 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 211 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 323 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 428 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 428 bp overlap
BRD4 9 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 128 bp overlap
ChIP LNCaP-clone-FGC_DHT-Enzalutamide GSE118247.BRD4.LNCaP-clone-FGC_DHT-Enzalutamide 218 bp overlap
ChIP OVCAR-3_DMSO GSE77568.BRD4.OVCAR-3_DMSO 428 bp overlap
ChIP OVCAR-3_JQ1 GSE77568.BRD4.OVCAR-3_JQ1 428 bp overlap
ChIP SUM185_DMSO GSE63581.BRD4.SUM185_DMSO 195 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 99 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 266 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 428 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 266 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 60 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 132 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 321 bp overlap
CTCF 1 dataset
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 180 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 191 bp overlap
EGR1 1 dataset
ChIP T-HESCs GSE141063.EGR1.T-HESCs 240 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 428 bp overlap
ESR1 3 datasets
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 208 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 250 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 169 bp overlap
EZH2 16 datasets
ChIP GM23338 ENCFF613YON 182 bp overlap
ChIP GM23338 ENCFF613YON 385 bp overlap
ChIP GM23338 ENCFF613YON 128 bp overlap
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 428 bp overlap
ChIP H1 ENCFF232NZA 367 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 230 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 297 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 202 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 428 bp overlap
ChIP astrocyte ENCFF365JTP 428 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 346 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 428 bp overlap
ChIP hepatocyte ENCFF552DZB 428 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 428 bp overlap
ChIP keratinocyte ENCFF070STK 428 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 428 bp overlap
EZH2_phosphoT487 1 dataset
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 428 bp overlap
GATA4 1 dataset
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 66 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H_bioMerck GSE116344.HDAC2.RH4_Entinostat-6H_bioMerck 147 bp overlap
HIVEP1 1 dataset
ChIP Hep-G2 ENCSR697WMX.HIVEP1.Hep-G2 179 bp overlap
ISL2 1 dataset
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
JARID2 5 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 318 bp overlap
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 428 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 373 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 379 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 428 bp overlap
JUND 1 dataset
ChIP Kasumi-1_ctrl GSE117105.JUND.Kasumi-1_ctrl 121 bp overlap
KDM4A 3 datasets
ChIP H1 ENCFF078LED 419 bp overlap
ChIP H1 ENCFF078LED 428 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 428 bp overlap
KLF1 1 dataset
Motif ES_0h ES_0h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif ES_0h ES_0h-KLF10_MA1511.2 9 bp overlap
KLF11 1 dataset
Motif ES_0h ES_0h-KLF11_MA1512.2 10 bp overlap
KLF14 1 dataset
Motif ES_0h ES_0h-KLF14_MA0740.2 9 bp overlap
KLF16 1 dataset
Motif ES_0h ES_0h-KLF16_MA0741.1 11 bp overlap
KLF2 1 dataset
Motif ES_0h ES_0h-KLF2_MA1515.2 8 bp overlap
KLF4 1 dataset
Motif ES_0h ES_0h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
KLF9 1 dataset
Motif ES_0h ES_0h-KLF9_MA1107.3 11 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 226 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 356 bp overlap
MXI1 3 datasets
ChIP SK-N-SH ENCFF746HVJ 265 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 130 bp overlap
ChIP neural ENCSR934NHU.MXI1.neural 428 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 330 bp overlap
MYC 1 dataset
ChIP NB69 GSE138295.MYC.NB69 348 bp overlap
MYCN 6 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 219 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 154 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 103 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 213 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 277 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 428 bp overlap
Mecom 1 dataset
Motif ES_0h ES_0h-Mecom_MA0029.2 11 bp overlap
NANOG 1 dataset
ChIP WA01 ENCSR000BMT.NANOG.WA01 117 bp overlap
NBN 1 dataset
ChIP MCF-10A GSE93038.NBN.MCF-10A 258 bp overlap
NFATC3 1 dataset
ChIP Hep-G2 GSE97661.NFATC3.Hep-G2 216 bp overlap
NKX2-1 1 dataset
ChIP NCI-H2087 GSE39998.NKX2-1.NCI-H2087 110 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_DMSO GSE104261.NOTCH3.TALL-1_DMSO 206 bp overlap
PATZ1 1 dataset
Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 185 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 60 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 248 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 428 bp overlap
POLR2A 8 datasets
ChIP esophagus muscularis mucosa ENCFF759BBR 383 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 258 bp overlap
ChIP gastroesophageal sphincter ENCFF238INU 419 bp overlap
ChIP sigmoid colon ENCFF725QFT 406 bp overlap
ChIP sigmoid colon ENCFF748YVT 417 bp overlap
ChIP sigmoid colon ENCFF754JQR 282 bp overlap
ChIP thyroid gland ENCFF979LRR 428 bp overlap
ChIP vagina ENCFF384GAB 428 bp overlap
POU5F1 3 datasets
ChIP BG03 GSE21614.POU5F1.BG03 216 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 318 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 141 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 204 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RAD21 1 dataset
ChIP neural ENCSR198ZYJ.RAD21.neural 428 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 398 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 184 bp overlap
RFX5 1 dataset
ChIP SK-N-SH ENCFF755HLO 118 bp overlap
RNF2 2 datasets
ChIP H1 ENCFF239FFS 428 bp overlap
ChIP WA01 ENCSR784VUY.RNF2.WA01 428 bp overlap
RUNX1 1 dataset
ChIP AML GSE111821.RUNX1.AML 224 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 337 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 419 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 108 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 299 bp overlap
SMAD2 1 dataset
Motif ES_0h ES_0h-SMAD2_MA1964.2 6 bp overlap
SMAD3 1 dataset
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 127 bp overlap
SMARCA4 4 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 214 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 308 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 272 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 213 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 337 bp overlap
SMC3 2 datasets
ChIP neural ENCSR404BPV.SMC3.neural 427 bp overlap
ChIP neural cell ENCFF795YGY 350 bp overlap
SOX15 1 dataset
Motif DE_12h DE_12h-SOX15_MA1152.2 7 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 173 bp overlap
SP8 1 dataset
Motif ES_0h ES_0h-SP8_MA0747.2 11 bp overlap
SS18 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 280 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 116 bp overlap
SUZ12 2 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 389 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 234 bp overlap
TAF1 1 dataset
ChIP neural ENCSR000BTX.TAF1.neural 104 bp overlap
TCF12 1 dataset
ChIP Kasumi-1 GSE23730.TCF12.Kasumi-1 178 bp overlap
USF1 1 dataset
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 53 bp overlap
Wt1 1 dataset
Motif ES_0h ES_0h-Wt1_MA1627.2 10 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 237 bp overlap
ZBTB48 1 dataset
ChIP U2OS GSE96776.ZBTB48.U2OS 332 bp overlap
ZIC1 1 dataset
Motif ES_0h ES_0h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif ES_0h ES_0h-ZIC4_MA0751.2 14 bp overlap
ZIC5 2 datasets
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
Motif ES_0h ES_0h-ZIC5_MA1584.2 15 bp overlap
ZNF148 1 dataset
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF281 1 dataset
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF530 1 dataset
Motif ES_0h ES_0h-ZNF530_MA1981.2 14 bp overlap
ZNF93 2 datasets
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
Motif ES_0h ES_0h-ZNF93_MA1721.2 14 bp overlap
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