chr12 : 6,342,478 6,342,614
136 bp 65 TFs 1 linked gene
This 136 bp open chromatin element is linked to TNFRSF1A and is bound by 65 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
TNFRSF1A 393 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:6,337,478 – 6,347,614
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
AR 38 datasets
ChIP DU145 GSE47987.AR.DU145 109 bp overlap
ChIP DU145_ARQ6540X GSE47987.AR.DU145_ARQ6540X 94 bp overlap
ChIP LNCaP GSE85558.AR.LNCaP 136 bp overlap
ChIP LNCaP GSE117430.AR.LNCaP 136 bp overlap
ChIP LNCaP ERP003503.AR.LNCaP 136 bp overlap
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 136 bp overlap
ChIP LNCaP_1F5 GSE30623.AR.LNCaP_1F5 136 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 136 bp overlap
ChIP LNCaP_Bag-1L_WT_DHT GSE89938.AR.LNCaP_Bag-1L_WT_DHT 117 bp overlap
ChIP LNCaP_DSG GSE114737.AR.LNCaP_DSG 136 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 136 bp overlap
ChIP LNCaP_R1881 GSE62492.AR.LNCaP_R1881 136 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 136 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.AR.LNCaP_SHFOXA1_R1881 136 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 78 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 119 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 136 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 97 bp overlap
ChIP LNCaP_androgen-Y_hypoxia-Y GSE114732.AR.LNCaP_androgen-Y_hypoxia-Y 117 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 136 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 136 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 136 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 136 bp overlap
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 119 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 106 bp overlap
ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 136 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.AR.primary-prostate-cancer_P2_DSG 136 bp overlap
ChIP prostate GSE56288.AR.prostate 136 bp overlap
ChIP prostate-cancer_C4-2-CON GSE136128.AR.prostate-cancer_C4-2-CON 136 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.AR.prostate-cancer_PDX_167 136 bp overlap
ChIP prostate_1592_T GSE130408.AR.prostate_1592_T 60 bp overlap
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 136 bp overlap
ChIP prostate_1853_T GSE130408.AR.prostate_1853_T 136 bp overlap
ChIP prostate_2752_T GSE130408.AR.prostate_2752_T 136 bp overlap
ChIP prostate_4024_T GSE130408.AR.prostate_4024_T 136 bp overlap
ChIP prostate_P7 GSE130408.AR.prostate_P7 96 bp overlap
ChIP prostate_normal_1335 GSE118845.AR.prostate_normal_1335 136 bp overlap
ChIP prostate_normal_1609 GSE118845.AR.prostate_normal_1609 75 bp overlap
ASH2L 1 dataset
ChIP HepG2 ENCFF207QHL 98 bp overlap
BRD2 3 datasets
ChIP NCI-H23 GSE104481.BRD2.NCI-H23 136 bp overlap
ChIP NCI-H23 GSE113714.BRD2.NCI-H23 66 bp overlap
ChIP THP-1_DMSO GSE138084.BRD2.THP-1_DMSO 66 bp overlap
BRD4 6 datasets
ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 90 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 136 bp overlap
ChIP HEK293T GSE39579.BRD4.HEK293T 136 bp overlap
ChIP HT29 GSE73319.BRD4.HT29 136 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 73 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 59 bp overlap
CHD4 1 dataset
ChIP A549 ENCFF005TEA 120 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF419EBE 54 bp overlap
DPF2 1 dataset
ChIP K-562 ENCSR219BXP.DPF2.K-562 131 bp overlap
E4F1 1 dataset
ChIP K-562 ENCSR731LHZ.E4F1.K-562 98 bp overlap
ELF1 1 dataset
ChIP K562 ENCFF886KFV 136 bp overlap
EP300 1 dataset
ChIP A549 ENCFF960ZEI 64 bp overlap
EZH2 2 datasets
ChIP Jurkat GSE147198.EZH2.Jurkat 135 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 91 bp overlap
FOSL1 1 dataset
ChIP K562 ENCFF455MKD 136 bp overlap
FOXA1 5 datasets
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 136 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 107 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.FOXA1.LNCaP_SHGATA2_R1881 124 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 72 bp overlap
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 86 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 136 bp overlap
ChIP DE DE-FOXA2-1 136 bp overlap
ChIP DE DE-FOXA2-2 136 bp overlap
GATA2 3 datasets
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 132 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 136 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 93 bp overlap
GATA3 1 dataset
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 136 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 136 bp overlap
ChIP DE DE-GATA4-2 136 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 74 bp overlap
ChIP foregut GSE117136.GATA4.foregut 136 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 126 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 136 bp overlap
ChIP DE DE-GATA6-2 136 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 113 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 136 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 108 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 128 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 136 bp overlap
ChIP foregut GSE117136.GATA6.foregut 136 bp overlap
GMEB1 1 dataset
ChIP K562 ENCFF705LHX 99 bp overlap
HDAC1 1 dataset
ChIP K562 ENCFF968WBH 89 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR075HTM.HDAC2.K-562 136 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR563YDA.HDGF.K-562 136 bp overlap
IKZF1 2 datasets
ChIP K562 ENCFF348IBL 136 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 136 bp overlap
IKZF2 1 dataset
ChIP GM12878 ENCFF918AID 88 bp overlap
MED1 4 datasets
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 59 bp overlap
ChIP MOLM-13 GSE154985.MED1.MOLM-13 73 bp overlap
ChIP SGBS GSE64233.MED1.SGBS 136 bp overlap
ChIP SUM159PT_DMSO_24h GSE87418.MED1.SUM159PT_DMSO_24h 136 bp overlap
MTA2 1 dataset
ChIP K562 ENCFF441KCP 85 bp overlap
MYC 3 datasets
ChIP HepG2 ENCFF575FXK 62 bp overlap
ChIP MIA-PaCa-2_CM GSE143804.MYC.MIA-PaCa-2_CM 133 bp overlap
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 136 bp overlap
NBN 2 datasets
ChIP GM12878 ENCFF213ZNN 67 bp overlap
ChIP K562 ENCFF146YTY 126 bp overlap
NCOR1 1 dataset
ChIP K562 ENCFF788MPU 100 bp overlap
NR2C2 1 dataset
ChIP K562 ENCFF750AXF 136 bp overlap
NR3C1 4 datasets
ChIP HCC1937 GSE152203.NR3C1.HCC1937 136 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.NR3C1.LNCaP_1F5_SIFOXA1 136 bp overlap
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 135 bp overlap
ChIP U2OS_SHHIC5 GSE65847.NR3C1.U2OS_SHHIC5 77 bp overlap
PGR 4 datasets
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 136 bp overlap
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 136 bp overlap
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 136 bp overlap
ChIP breast_tumor_Male_30 GSE104399.PGR.breast_tumor_Male_30 111 bp overlap
PHF20 1 dataset
ChIP HepG2 ENCFF609JBM 136 bp overlap
PHF21A 1 dataset
ChIP HepG2 ENCFF525EUW 56 bp overlap
PHIP 2 datasets
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 136 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 136 bp overlap
PPARG 1 dataset
ChIP ASC GSE21366.PPARG.ASC 133 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 136 bp overlap
PROX1 1 dataset
ChIP HepG2 ENCFF016ZJS 51 bp overlap
RELA 1 dataset
ChIP K-562 ENCSR772EEN.RELA.K-562 136 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE68976.RUNX1.Jurkat 88 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 136 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 117 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 136 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 98 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 136 bp overlap
SMARCA4 5 datasets
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 102 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 54 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 136 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 136 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 136 bp overlap
SMARCA5 1 dataset
ChIP GM12878 ENCFF327LDR 136 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 108 bp overlap
TEAD4 1 dataset
ChIP A549 ENCFF243FTL 55 bp overlap
TIGD3 1 dataset
ChIP HepG2 ENCFF491KVL 128 bp overlap
TP63 4 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 78 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 136 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 106 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 57 bp overlap
TRIM28 2 datasets
ChIP HEK293 ENCFF265CEM 136 bp overlap
ChIP HEK293 ENCFF582MWI 105 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 136 bp overlap
YY1 1 dataset
ChIP liver ENCFF400MBC 74 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 136 bp overlap
ZBTB25 1 dataset
ChIP HepG2 ENCFF648SDH 136 bp overlap
ZNF507 1 dataset
ChIP MCF-7 ENCFF080XWY 116 bp overlap
ZNF518A 1 dataset
ChIP HEK293 ENCFF892ULS 136 bp overlap
ZNF592 1 dataset
ChIP K562 ENCFF547OSS 99 bp overlap
ZNF607 1 dataset
ChIP HepG2 ENCFF118ANP 136 bp overlap