chr11 : 133,854,269 133,855,200
931 bp 98 TFs 2 linked genes
This 931 bp open chromatin element is linked to IGSF9B and JAM3 and is bound by 98 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
IGSF9B 102.3 kb Distal Multiome
JAM3 214.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:133,849,269 – 133,860,200
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
98 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 222 bp overlap
BACH1 2 datasets
ChIP H1 ENCFF282VDB 321 bp overlap
ChIP WA01 ENCSR000EBQ.BACH1.WA01 140 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 161 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 164 bp overlap
BHLHE22 2 datasets
Motif DE_24h DE_24h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_36h DE_36h-BHLHE22_MA1635.2 6 bp overlap
Bhlha15 2 datasets
Motif DE_24h DE_24h-Bhlha15_MA1472.3 8 bp overlap
Motif DE_36h DE_36h-Bhlha15_MA1472.3 8 bp overlap
CTBP2 1 dataset
ChIP H1 ENCFF329MAX 432 bp overlap
CTCF 2 datasets
Motif DE_24h DE_24h-CTCF_MA1929.2 31 bp overlap
Motif DE_36h DE_36h-CTCF_MA1929.2 31 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF262VBH 449 bp overlap
ChIP BLaER1 ENCFF274GAT 295 bp overlap
ChIP BLaER1 ENCFF460KDD 366 bp overlap
DMRTA1 2 datasets
Motif DE_24h DE_24h-DMRTA1_MA1707.2 10 bp overlap
Motif DE_36h DE_36h-DMRTA1_MA1707.2 10 bp overlap
DMRTA2 2 datasets
Motif DE_24h DE_24h-DMRTA2_MA1478.2 6 bp overlap
Motif DE_36h DE_36h-DMRTA2_MA1478.2 6 bp overlap
DMRTC2 2 datasets
Motif DE_24h DE_24h-DMRTC2_MA1479.2 11 bp overlap
Motif DE_36h DE_36h-DMRTC2_MA1479.2 11 bp overlap
Dmrt1 2 datasets
Motif DE_24h DE_24h-Dmrt1_MA1603.2 9 bp overlap
Motif DE_36h DE_36h-Dmrt1_MA1603.2 9 bp overlap
E2F6 2 datasets
Motif DE_24h DE_24h-E2F6_MA0471.3 8 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 216 bp overlap
E2F8 1 dataset
Motif DE_24h DE_24h-E2F8_MA0865.3 9 bp overlap
EBF1 1 dataset
ChIP GM12878 ENCSR000DZQ.EBF1.GM12878 214 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 388 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 192 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 171 bp overlap
EZH2 2 datasets
ChIP THP-1 GSE135024.EZH2.THP-1 83 bp overlap
ChIP hESC GSE113817.EZH2.hESC 275 bp overlap
FOSL2 1 dataset
ChIP HepG2 ENCFF548CXY 357 bp overlap
FOXA1 2 datasets
ChIP LS180 GSE140533.FOXA1.LS180 65 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 193 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 609 bp overlap
ChIP DE DE-FOXA2-2 554 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 230 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 480 bp overlap
ChIP DE DE-GATA4-2 611 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 640 bp overlap
ChIP DE DE-GATA6-2 678 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 513 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 467 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 566 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 749 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 416 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 375 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 343 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 463 bp overlap
HDAC2 4 datasets
ChIP H1 ENCFF353UJQ 362 bp overlap
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 378 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 273 bp overlap
HNF4A 3 datasets
Motif DE_24h DE_24h-HNF4A_MA1494.2 14 bp overlap
Motif DE_36h DE_36h-HNF4A_MA0114.5 9 bp overlap
Motif DE_36h DE_36h-HNF4A_MA1494.2 14 bp overlap
HNF4G 1 dataset
Motif DE_36h DE_36h-HNF4G_MA0484.3 9 bp overlap
JUN 8 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 671 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 288 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 820 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 886 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 664 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 464 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 425 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 539 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 701 bp overlap
ChIP H1 ENCFF078LED 645 bp overlap
KLF15 1 dataset
Motif DE_24h DE_24h-KLF15_MA1513.2 8 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCFF658MHR 425 bp overlap
LIN54 2 datasets
Motif DE_24h DE_24h-LIN54_MA0619.2 7 bp overlap
Motif DE_36h DE_36h-LIN54_MA0619.2 7 bp overlap
MAFK 1 dataset
ChIP WA01 ENCSR000EBS.MAFK.WA01 128 bp overlap
MYF5 2 datasets
Motif DE_24h DE_24h-MYF5_MA1641.2 8 bp overlap
Motif DE_36h DE_36h-MYF5_MA1641.2 8 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 252 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 209 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 153 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 330 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 317 bp overlap
NEUROD1 2 datasets
Motif DE_24h DE_24h-NEUROD1_MA1109.2 8 bp overlap
Motif DE_36h DE_36h-NEUROD1_MA1109.2 8 bp overlap
NFATC3 2 datasets
Motif DE_24h DE_24h-NFATC3_MA0625.3 6 bp overlap
Motif DE_36h DE_36h-NFATC3_MA0625.3 6 bp overlap
NFE2 1 dataset
ChIP K562 ENCFF047YKA 405 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 377 bp overlap
Neurod2 4 datasets
Motif DE_24h DE_24h-Neurod2_MA0668.3 8 bp overlap
Motif DE_24h DE_24h-Neurod2_MA1993.2 6 bp overlap
Motif DE_36h DE_36h-Neurod2_MA0668.3 8 bp overlap
Motif DE_36h DE_36h-Neurod2_MA1993.2 6 bp overlap
Nfat5 2 datasets
Motif DE_24h DE_24h-Nfat5_MA0606.3 8 bp overlap
Motif DE_36h DE_36h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 2 datasets
Motif DE_24h DE_24h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_36h DE_36h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 2 datasets
Motif DE_24h DE_24h-Nfatc2_MA0152.3 8 bp overlap
Motif DE_36h DE_36h-Nfatc2_MA0152.3 8 bp overlap
Olig2 2 datasets
Motif DE_24h DE_24h-Olig2_MA1997.2 6 bp overlap
Motif DE_36h DE_36h-Olig2_MA1997.2 6 bp overlap
PBX1 2 datasets
Motif DE_24h DE_24h-PBX1_MA0070.2 9 bp overlap
Motif DE_36h DE_36h-PBX1_MA0070.2 9 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 508 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 202 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 632 bp overlap
PPARG 1 dataset
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 150 bp overlap
Prdm15 2 datasets
Motif DE_24h DE_24h-Prdm15_MA1616.2 11 bp overlap
Motif DE_36h DE_36h-Prdm15_MA1616.2 11 bp overlap
Ptf1A 2 datasets
Motif DE_24h DE_24h-Ptf1A_MA1619.2 8 bp overlap
Motif DE_36h DE_36h-Ptf1A_MA1619.2 8 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 256 bp overlap
REL 2 datasets
Motif DE_24h DE_24h-REL_MA0101.1 10 bp overlap
Motif DE_36h DE_36h-REL_MA0101.1 10 bp overlap
RELA 3 datasets
Motif DE_24h DE_24h-RELA_MA0107.1 10 bp overlap
Motif DE_36h DE_36h-RELA_MA0107.1 10 bp overlap
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 169 bp overlap
RELB 2 datasets
Motif DE_24h DE_24h-RELB_MA1117.2 7 bp overlap
Motif DE_36h DE_36h-RELB_MA1117.2 7 bp overlap
RXRA 1 dataset
ChIP WA01 ENCSR000BJW.RXRA.WA01 177 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 155 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 623 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 615 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 627 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 705 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 674 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 807 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 852 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 918 bp overlap
SMAD3 4 datasets
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 220 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 404 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 385 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 292 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 287 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 381 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 262 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 411 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 295 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 255 bp overlap
SOX10 2 datasets
Motif DE_24h DE_24h-SOX10_MA0442.3 6 bp overlap
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 642 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 275 bp overlap
SP2 1 dataset
Motif DE_24h DE_24h-SP2_MA0516.3 9 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 227 bp overlap
SP5 1 dataset
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
SREBF1 2 datasets
Motif DE_24h DE_24h-SREBF1_MA0595.1 10 bp overlap
Motif DE_36h DE_36h-SREBF1_MA0595.1 10 bp overlap
SREBF2 2 datasets
Motif DE_24h DE_24h-SREBF2_MA0596.1 10 bp overlap
Motif DE_36h DE_36h-SREBF2_MA0596.1 10 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 434 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 349 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 292 bp overlap
TFAP2E 2 datasets
Motif DE_24h DE_24h-TFAP2E_MA1569.2 9 bp overlap
Motif DE_36h DE_36h-TFAP2E_MA1569.2 9 bp overlap
TFDP1 1 dataset
Motif DE_24h DE_24h-TFDP1_MA1122.2 8 bp overlap
TP53 3 datasets
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 261 bp overlap
ChIP H9_mesoderm GSE142050.TP53.H9_mesoderm 244 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 601 bp overlap
TP63 4 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 398 bp overlap
ChIP BxPC-3 GSE115461.TP63.BxPC-3 50 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 73 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 50 bp overlap
Tbx6 6 datasets
Motif DE_24h DE_24h-Tbx6_MA1567.3 9 bp overlap
Motif DE_24h DE_24h-Tbx6_MA1567.3 9 bp overlap
Motif DE_24h DE_24h-Tbx6_MA1567.3 9 bp overlap
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
Tcf12 2 datasets
Motif DE_24h DE_24h-Tcf12_MA0521.3 6 bp overlap
Motif DE_36h DE_36h-Tcf12_MA0521.3 6 bp overlap
Twist2 2 datasets
Motif DE_24h DE_24h-Twist2_MA0633.3 6 bp overlap
Motif DE_36h DE_36h-Twist2_MA0633.3 6 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 168 bp overlap
ZBTB18 2 datasets
Motif DE_24h DE_24h-ZBTB18_MA0698.2 11 bp overlap
Motif DE_36h DE_36h-ZBTB18_MA0698.2 11 bp overlap
ZIC1 2 datasets
Motif DE_24h DE_24h-ZIC1_MA0696.1 14 bp overlap
Motif DE_36h DE_36h-ZIC1_MA0696.1 14 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 624 bp overlap
ZIC5 2 datasets
Motif DE_24h DE_24h-ZIC5_MA1584.2 15 bp overlap
Motif DE_36h DE_36h-ZIC5_MA1584.2 15 bp overlap
ZNF114 1 dataset
ChIP GM23338 ENCFF631OSW 357 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 289 bp overlap
ZNF213 2 datasets
Motif DE_24h DE_24h-ZNF213_MA2121.1 12 bp overlap
Motif DE_36h DE_36h-ZNF213_MA2121.1 12 bp overlap
ZNF281 2 datasets
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
Motif DE_36h DE_36h-ZNF281_MA1630.3 10 bp overlap
ZNF398 2 datasets
ChIP BG01V GSE133630.ZNF398.BG01V 213 bp overlap
ChIP H9 GSE133630.ZNF398.H9 199 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 537 bp overlap
ZNF460 1 dataset
Motif DE_24h DE_24h-ZNF460_MA1596.1 16 bp overlap
ZNF462 3 datasets
ChIP GM23338 ENCFF896CCA 105 bp overlap
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 258 bp overlap
ZNF530 2 datasets
Motif DE_24h DE_24h-ZNF530_MA1981.2 14 bp overlap
Motif DE_36h DE_36h-ZNF530_MA1981.2 14 bp overlap
ZNF701 4 datasets
Motif DE_24h DE_24h-ZNF701_MA1987.2 17 bp overlap
Motif DE_24h DE_24h-ZNF701_MA1987.2 17 bp overlap
Motif DE_36h DE_36h-ZNF701_MA1987.2 17 bp overlap
Motif DE_36h DE_36h-ZNF701_MA1987.2 17 bp overlap
Zic2 2 datasets
Motif DE_24h DE_24h-Zic2_MA1629.2 9 bp overlap
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap