chr1 : 198,903,349 198,903,585
236 bp 101 TFs 0 linked genes
This 236 bp open chromatin element has no linked target genes and is bound by 101 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:198,898,349 – 198,908,585
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
101 transcription factors
Source
Cell type
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 228 bp overlap
AR 1 dataset
ChIP LNCaP_DHTTHZ1 GSE125245.AR.LNCaP_DHTTHZ1 97 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 233 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 236 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 232 bp overlap
BCL6 4 datasets
Motif DE_12h DE_12h-BCL6_MA0463.3 13 bp overlap
Motif ES_0h ES_0h-BCL6_MA0463.3 13 bp overlap
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 212 bp overlap
ChIP OCI-Ly1 GSE107920.BCL6.OCI-Ly1 120 bp overlap
BRD4 15 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 116 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 216 bp overlap
ChIP HeLa GSE51633.BRD4.HeLa 161 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 129 bp overlap
ChIP MM1-S GSE43743.BRD4.MM1-S 166 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 180 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 50 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 152 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 188 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 236 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 236 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 230 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 236 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 183 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 236 bp overlap
CEBPA 1 dataset
ChIP SKH1_RUNX1-EVI1_KD GSE87283.CEBPA.SKH1_RUNX1-EVI1_KD 114 bp overlap
CEBPB 1 dataset
ChIP HCT116 ENCFF097OLY 90 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 236 bp overlap
CREBBP 1 dataset
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 194 bp overlap
CTCF 17 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 187 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 153 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 138 bp overlap
ChIP KMS-11 ENCFF853JKX 236 bp overlap
ChIP KMS-11 ENCFF853JKX 153 bp overlap
ChIP T-cell_naive GSE74850.CTCF.T-cell_naive 124 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 208 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 129 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 143 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 138 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF235CPK 236 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF277CZQ 236 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF338KEP 236 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF359BHR 233 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF595WAL 236 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF696JOF 228 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 236 bp overlap
DUX4 1 dataset
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 135 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 236 bp overlap
ChIP neural cell ENCFF442QNK 236 bp overlap
HAND2 2 datasets
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 236 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 236 bp overlap
IRF4 1 dataset
ChIP U266 GSE142493.IRF4.U266 190 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
KLF10 1 dataset
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
KLF12 1 dataset
Motif DE_12h DE_12h-KLF12_MA0742.2 9 bp overlap
KLF14 1 dataset
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KLF16 1 dataset
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 124 bp overlap
KMT2A 2 datasets
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 99 bp overlap
ChIP L826 GSE83671.KMT2A.L826 147 bp overlap
MAFF 7 datasets
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
ChIP HeLa-S3 ENCFF783SBT 232 bp overlap
ChIP HeLa-S3 ENCSR140DSL.MAFF.HeLa-S3 165 bp overlap
ChIP HepG2 ENCFF452YUT 227 bp overlap
ChIP K-562 ENCSR000EGI.MAFF.K-562 129 bp overlap
ChIP K562 ENCFF071YKK 222 bp overlap
MAFG 2 datasets
ChIP K-562 ENCSR818DQV.MAFG.K-562 236 bp overlap
ChIP K562 ENCFF455EEO 236 bp overlap
MAFK 12 datasets
ChIP A549 ENCFF371EPR 236 bp overlap
ChIP H1 ENCFF854XWE 233 bp overlap
ChIP HeLa-S3 ENCFF304XGR 236 bp overlap
ChIP HeLa-S3 ENCSR000ECK.MAFK.HeLa-S3 131 bp overlap
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 166 bp overlap
ChIP HepG2 ENCFF743ZOF 214 bp overlap
ChIP HepG2 ENCFF767LDG 218 bp overlap
ChIP IMR-90 ENCFF336DHZ 156 bp overlap
ChIP MCF-7 ENCFF558JLG 236 bp overlap
ChIP MCF-7 ENCSR555PBN.MAFK.MCF-7 194 bp overlap
ChIP OCI-Ly7 GSE47784.MAFK.OCI-Ly7 236 bp overlap
ChIP WA01 ENCSR000EBS.MAFK.WA01 226 bp overlap
MAZ 1 dataset
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
MED1 3 datasets
ChIP MM1-S_JQ1 GSE42161.MED1.MM1-S_JQ1 191 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 236 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 236 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 103 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 236 bp overlap
Mafb 2 datasets
Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap
Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap
Msgn1 1 dataset
Motif DE_12h DE_12h-Msgn1_MA1524.3 10 bp overlap
NCOA2 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 118 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 145 bp overlap
NCOR1 1 dataset
ChIP OCI-Ly1 GSE29282.NCOR1.OCI-Ly1 137 bp overlap
NEUROD1 2 datasets
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 236 bp overlap
Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap
NKX2-2 1 dataset
Motif DE_12h DE_12h-NKX2-2_MA1645.2 8 bp overlap
NRL 1 dataset
Motif DE_12h DE_12h-NRL_MA0842.3 12 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 103 bp overlap
OLIG2 2 datasets
ChIP brain-prefrontal-cortex_2017025 GSE129039.OLIG2.brain-prefrontal-cortex_2017025 236 bp overlap
ChIP brain-prefrontal-cortex_2017039 GSE129039.OLIG2.brain-prefrontal-cortex_2017039 128 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 211 bp overlap
POLR2A 5 datasets
ChIP HL-60 ENCFF321XKE 236 bp overlap
ChIP SK-N-MC ENCFF088IVG 236 bp overlap
ChIP SK-N-MC ENCFF088IVG 85 bp overlap
ChIP neural cell ENCFF604SPB 236 bp overlap
ChIP spleen ENCFF044PYR 236 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 145 bp overlap
POU5F1 1 dataset
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 164 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 214 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 170 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 188 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 77 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Prdm14 1 dataset
Motif DE_12h DE_12h-Prdm14_MA1998.2 8 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1618.2 9 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 236 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 97 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 236 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 163 bp overlap
RBPJ 2 datasets
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 133 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 236 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 137 bp overlap
ChIP neural cell ENCFF882LXX 158 bp overlap
RREB1 1 dataset
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
RUNX1 2 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 135 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 135 bp overlap
SMAD3 2 datasets
Motif DE_12h DE_12h-SMAD3_MA0795.1 10 bp overlap
Motif ES_0h ES_0h-SMAD3_MA0795.1 10 bp overlap
SMAD5 2 datasets
Motif DE_12h DE_12h-SMAD5_MA1557.1 10 bp overlap
Motif ES_0h ES_0h-SMAD5_MA1557.1 10 bp overlap
SMARCA2 3 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 68 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 236 bp overlap
ChIP SK-N-MC_shGFP GSE94275.SMARCA2.SK-N-MC_shGFP 63 bp overlap
SMARCA4 7 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 57 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 114 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 236 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 236 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 236 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 236 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 199 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 205 bp overlap
SMARCC1 3 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 236 bp overlap
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 80 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 236 bp overlap
SMC3 2 datasets
ChIP A549 ENCFF747SCJ 231 bp overlap
ChIP neural cell ENCFF795YGY 236 bp overlap
SOX10 2 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 236 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 197 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 198 bp overlap
SOX3 1 dataset
ChIP NPC GSE122631.SOX3.NPC 236 bp overlap
SOX4 1 dataset
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
SP1 2 datasets
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 153 bp overlap
SP2 1 dataset
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
SP3 1 dataset
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SP8 2 datasets
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
Motif ES_0h ES_0h-SP8_MA0747.2 11 bp overlap
SS18 1 dataset
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 236 bp overlap
Smad4 2 datasets
Motif DE_12h DE_12h-Smad4_MA1153.2 7 bp overlap
Motif ES_0h ES_0h-Smad4_MA1153.2 7 bp overlap
Sox6 1 dataset
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
TAF1 3 datasets
ChIP WA01 ENCSR000BHO.TAF1.WA01 124 bp overlap
ChIP neural ENCSR000BTX.TAF1.neural 111 bp overlap
ChIP neural cell ENCFF468SPD 236 bp overlap
TEAD4 1 dataset
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
TP53 15 datasets
ChIP GM00011 GSE55727.TP53.GM00011 131 bp overlap
ChIP GM06170 GSE55727.TP53.GM06170 235 bp overlap
ChIP H9 GSE142050.TP53.H9 236 bp overlap
ChIP H9_mesoderm GSE142050.TP53.H9_mesoderm 218 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP53.MCF-10A_Nutlin3A 234 bp overlap
ChIP MCF-7_2-5h_IR_10Gy GSE100099.TP53.MCF-7_2-5h_IR_10Gy 182 bp overlap
ChIP MCF-7_7-5h_IR_10Gy_Nutlin GSE100099.TP53.MCF-7_7-5h_IR_10Gy_Nutlin 227 bp overlap
ChIP MCF-7_nutlin GSE86164.TP53.MCF-7_nutlin 200 bp overlap
ChIP SJSA-1_nutlin GSE86164.TP53.SJSA-1_nutlin 168 bp overlap
ChIP SaOS-2 GSE15780.TP53.SaOS-2 193 bp overlap
ChIP U2OS_NUT GSE46641.TP53.U2OS_NUT 236 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 236 bp overlap
ChIP keratinocyte GSE56674.TP53.keratinocyte 140 bp overlap
ChIP keratinocyte_ADRIA GSE56674.TP53.keratinocyte_ADRIA 180 bp overlap
ChIP keratinocyte_CISP GSE56674.TP53.keratinocyte_CISP 170 bp overlap
TP63 12 datasets
ChIP JHU-029 GSE88859.TP63.JHU-029 129 bp overlap
ChIP MCF-10A_DCIS GSE72009.TP63.MCF-10A_DCIS 203 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 236 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 164 bp overlap
ChIP keratinocyte GSE56674.TP63.keratinocyte 204 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 177 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 224 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 188 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 184 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 147 bp overlap
ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 126 bp overlap
ChIP keratinocyte_epidermal_KDPAF GSE67382.TP63.keratinocyte_epidermal_KDPAF 179 bp overlap
TP73 2 datasets
Motif DE_12h DE_12h-TP73_MA0861.2 16 bp overlap
Motif ES_0h ES_0h-TP73_MA0861.2 16 bp overlap
TP73_TA 1 dataset
ChIP SaOS-2 GSE15780.TP73_TA.SaOS-2 210 bp overlap
Wt1 2 datasets
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
Motif ES_0h ES_0h-Wt1_MA1627.2 10 bp overlap
Yy1 1 dataset
Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap
ZBTB24 1 dataset
Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF184 1 dataset
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF341 2 datasets
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 195 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 103 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 146 bp overlap
ZNF682 3 datasets
Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap
Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap
Motif ES_0h ES_0h-ZNF682_MA1599.2 11 bp overlap
ZNF85 1 dataset
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
Zfp335 2 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap