chr11 : 32,092,613 32,093,131
518 bp 88 TFs 1 linked gene
This 518 bp open chromatin element is linked to RCN1 and is bound by 88 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
RCN1 1.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:32,087,613 – 32,098,131
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 365 bp overlap
AR 4 datasets
ChIP 22Rv1_siARFL_R1881 GSE80742.AR.22Rv1_siARFL_R1881 298 bp overlap
ChIP DU145_ARQ6540X GSE47987.AR.DU145_ARQ6540X 176 bp overlap
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 387 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 145 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 304 bp overlap
ARID2 3 datasets
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 518 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 127 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-T910M 345 bp overlap
ASH2L 1 dataset
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 227 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 489 bp overlap
BRD2 2 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 166 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 107 bp overlap
BRD4 8 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 270 bp overlap
ChIP COLO-205 GSE73319.BRD4.COLO-205 187 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 195 bp overlap
ChIP SEM GSE83671.BRD4.SEM 196 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 245 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 518 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 518 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 65 bp overlap
CBFB 1 dataset
ChIP Hep-G2 ENCSR479RZV.CBFB.Hep-G2 132 bp overlap
CDK8 1 dataset
ChIP SW480 GSE53602.CDK8.SW480 200 bp overlap
CDX2 1 dataset
ChIP LS180_125 GSE31939.CDX2.LS180_125 117 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 164 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 268 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 157 bp overlap
CTCF 2 datasets
ChIP GP5D GSE51234.CTCF.GP5D 78 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 260 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 469 bp overlap
CUX1 1 dataset
ChIP Hep-G2 ENCSR049KIZ.CUX1.Hep-G2 294 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 126 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 206 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 163 bp overlap
EP300 1 dataset
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 175 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 146 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 179 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 346 bp overlap
ChIP DE DE-GATA4-2 439 bp overlap
ChIP foregut GSE117136.GATA4.foregut 318 bp overlap
GATA6 9 datasets
ChIP AGS GSE51705.GATA6.AGS 301 bp overlap
ChIP DE DE-GATA6-1 343 bp overlap
ChIP DE DE-GATA6-2 518 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 277 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 416 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 297 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 440 bp overlap
ChIP foregut GSE117136.GATA6.foregut 360 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 291 bp overlap
GATAD2B 2 datasets
ChIP GM12878 ENCFF781IAU 225 bp overlap
ChIP GM12878 ENCSR828NCB.GATAD2B.GM12878 187 bp overlap
HNF4A 4 datasets
ChIP HCT-116_TCF4 GSE62890.HNF4A.HCT-116_TCF4 404 bp overlap
ChIP HCT-116_TCF4_DOX GSE62890.HNF4A.HCT-116_TCF4_DOX 411 bp overlap
ChIP Hep-G2 ERP000209.HNF4A.Hep-G2 108 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 263 bp overlap
HNF4G 1 dataset
ChIP Hep-G2 ENCSR000BNJ.HNF4G.Hep-G2 204 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 195 bp overlap
IKZF2 1 dataset
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 410 bp overlap
INO80 1 dataset
ChIP Hep-G2 GSE97411.INO80.Hep-G2 178 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 133 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 55 bp overlap
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 159 bp overlap
KDM1A 1 dataset
ChIP HepG2 ENCFF240UWG 489 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 87 bp overlap
LEF1 1 dataset
ChIP hESC_WNT3A GSE64758.LEF1.hESC_WNT3A 295 bp overlap
MED1 1 dataset
ChIP GM12878 GSE93080.MED1.GM12878 221 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 89 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 449 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 184 bp overlap
MYBL2 2 datasets
ChIP A-673 GSE119971.MYBL2.A-673 62 bp overlap
ChIP A-673 GSE119971.MYBL2.A-673 103 bp overlap
MYC 1 dataset
ChIP GP5D GSE51234.MYC.GP5D 304 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 280 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 376 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 334 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 226 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 430 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 413 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 451 bp overlap
ChIP hESC GSE18292.NANOG.hESC 167 bp overlap
ChIP hESC GSE20650.NANOG.hESC 157 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 145 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 273 bp overlap
NEUROG2 4 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 170 bp overlap
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 131 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 162 bp overlap
ChIP MRC-5_N_02DPT GSE75910.NEUROG2.MRC-5_N_02DPT 188 bp overlap
NIPBL 1 dataset
ChIP HCT-116_RAD21-mAC GSE104888.NIPBL.HCT-116_RAD21-mAC 371 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 218 bp overlap
NR2F1 2 datasets
ChIP GM12878 ENCFF273VKX 434 bp overlap
ChIP GM12878 ENCSR514VYD.NR2F1.GM12878 346 bp overlap
NR2F6 1 dataset
ChIP Hep-G2 ENCSR518WPL.NR2F6.Hep-G2 221 bp overlap
NR3C1 8 datasets
ChIP BEAS-2B_DEX GSE125623.NR3C1.BEAS-2B_DEX 289 bp overlap
ChIP BEAS-2B_DEX_IA1 GSE125623.NR3C1.BEAS-2B_DEX_IA1 194 bp overlap
ChIP HeLa-B2_GRKD_DMSO GSE24518.NR3C1.HeLa-B2_GRKD_DMSO 121 bp overlap
ChIP U2OS_GLUCC ERP007081.NR3C1.U2OS_GLUCC 132 bp overlap
ChIP U2OS_SHHIC5 GSE65847.NR3C1.U2OS_SHHIC5 450 bp overlap
ChIP U2OS_SHNS GSE65847.NR3C1.U2OS_SHNS 308 bp overlap
ChIP U2OS_siBRMsiHic5 GSE109383.NR3C1.U2OS_siBRMsiHic5 313 bp overlap
ChIP U2OS_siHic5siNS GSE109383.NR3C1.U2OS_siHic5siNS 377 bp overlap
PARP1 1 dataset
ChIP MCF-10A GSE93038.PARP1.MCF-10A 268 bp overlap
PGR 2 datasets
ChIP AB32 GSE31129.PGR.AB32 331 bp overlap
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 205 bp overlap
PHIP 5 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 429 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 256 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 205 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 144 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 166 bp overlap
PKNOX1 2 datasets
ChIP GM12878 ENCFF589FCY 245 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 200 bp overlap
POLR2A 1 dataset
ChIP HCT116 ENCFF508RDJ 448 bp overlap
POU5F1 5 datasets
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 518 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 411 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 350 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 287 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 337 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 422 bp overlap
RELA 1 dataset
ChIP SW480_16h_TNFa GSE102796.RELA.SW480_16h_TNFa 409 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 180 bp overlap
REST 1 dataset
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 337 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE29180.RUNX1.Jurkat 125 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 212 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 370 bp overlap
SMARCA4 5 datasets
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 179 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 102 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 518 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 493 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 232 bp overlap
SMARCC1 3 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 222 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 288 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 252 bp overlap
SMARCC2 1 dataset
ChIP HeLa-S3 ENCFF313RPK 146 bp overlap
SNRNP70 2 datasets
ChIP K-562 GSE120104.SNRNP70.K-562 162 bp overlap
ChIP K-562 ENCSR754ZHU.SNRNP70.K-562 163 bp overlap
SOX13 3 datasets
ChIP Hep-G2 ENCSR445ACU.SOX13.Hep-G2 310 bp overlap
ChIP HepG2 ENCFF062VSQ 369 bp overlap
ChIP HepG2 ENCFF231PAK 341 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 219 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 518 bp overlap
SOX2 8 datasets
ChIP HNSC GSE69479.SOX2.HNSC 383 bp overlap
ChIP LK2_DNp63 GSE137459.SOX2.LK2_DNp63 332 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 430 bp overlap
ChIP NCI-H520 GSE137459.SOX2.NCI-H520 401 bp overlap
ChIP NPC GSE122631.SOX2.NPC 187 bp overlap
ChIP hESC GSE18292.SOX2.hESC 186 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 369 bp overlap
ChIP hiPSC_3s2 GSE81899.SOX2.hiPSC_3s2 266 bp overlap
SOX5 1 dataset
ChIP HepG2 ENCFF470KZD 281 bp overlap
SOX6 3 datasets
ChIP Hep-G2 ENCSR766TSU.SOX6.Hep-G2 430 bp overlap
ChIP HepG2 ENCFF767OCK 472 bp overlap
ChIP HepG2 ENCFF767OCK 268 bp overlap
SUPT5H 2 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 314 bp overlap
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 508 bp overlap
TCF7 2 datasets
ChIP Hep-G2 ENCSR444LIN.TCF7.Hep-G2 240 bp overlap
ChIP HepG2 ENCFF628OFQ 357 bp overlap
TCF7L2 4 datasets
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 472 bp overlap
ChIP HCT-116_C16 GSE127960.TCF7L2.HCT-116_C16 239 bp overlap
ChIP HCT-116_sc2 GSE127960.TCF7L2.HCT-116_sc2 382 bp overlap
ChIP HCT116 ENCFF038POZ 371 bp overlap
TP53 2 datasets
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 518 bp overlap
ChIP SW480_shp53_16h_TNF-a GSE115985.TP53.SW480_shp53_16h_TNF-a 296 bp overlap
XRCC5 1 dataset
ChIP HepG2 ENCFF330PDO 418 bp overlap
YY1 1 dataset
ChIP ALL GSE145549.YY1.ALL 253 bp overlap