chr11 : 27,359,253 27,359,849
596 bp 101 TFs 1 linked gene
This 596 bp open chromatin element is linked to CCDC34 and is bound by 101 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
CCDC34 3.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:27,354,253 – 27,364,849
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
101 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 ERP001226.AR.MCF-7 215 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 248 bp overlap
BCL6B 2 datasets
Motif DE_12h DE_12h-BCL6B_MA0731.1 17 bp overlap
Motif ES_0h ES_0h-BCL6B_MA0731.1 17 bp overlap
CHAMP1 1 dataset
ChIP K562 ENCFF860ZIW 457 bp overlap
CTBP1 2 datasets
ChIP HEK293T ENCFF003PDY 202 bp overlap
ChIP MCF-7 ENCSR636EYA.CTBP1.MCF-7 253 bp overlap
CTCF 51 datasets
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
Motif ES_0h ES_0h-CTCF_MA1930.2 33 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 155 bp overlap
ChIP GM23338 ENCFF531QOI 412 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 384 bp overlap
ChIP H9 ENCFF152GTF 387 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 240 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 240 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 394 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 170 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 231 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 207 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 252 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 255 bp overlap
ChIP HeLa-Kyoto GSE102884.CTCF.HeLa-Kyoto 245 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 442 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 428 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 406 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 212 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 183 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 143 bp overlap
ChIP K-562 GSE70482.CTCF.K-562 165 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.CTCF.K-562_dCas9-KRAB 197 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.CTCF.K-562_dCas9-LSD1 119 bp overlap
ChIP Loucy ENCFF359TVQ 326 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 178 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 137 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 142 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 163 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 230 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 114 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 120 bp overlap
ChIP endodermal cell ENCFF471YCZ 271 bp overlap
ChIP esophagus squamous epithelium ENCFF037IYT 397 bp overlap
ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 203 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 181 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 456 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 112 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 121 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 151 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 163 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 234 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 164 bp overlap
ChIP neural progenitor cell ENCFF420RBO 393 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 218 bp overlap
ChIP placenta ENCFF029PHY 440 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 244 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d3 221 bp overlap
ChIP smooth muscle cell ENCFF656FBT 357 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 189 bp overlap
CTCFL 1 dataset
ChIP OVCAR-8 GSE70764.CTCFL.OVCAR-8 175 bp overlap
E2F2 2 datasets
Motif DE_12h DE_12h-E2F2_MA0864.3 13 bp overlap
Motif ES_0h ES_0h-E2F2_MA0864.3 13 bp overlap
EGR1 2 datasets
ChIP Ishikawa ENCFF550FKT 268 bp overlap
ChIP Ishikawa ENCSR000BSQ.EGR1.Ishikawa 176 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 130 bp overlap
EOMES 1 dataset
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
ESR1 23 datasets
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 215 bp overlap
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 186 bp overlap
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 191 bp overlap
ChIP Ishikawa_C1-5 GSE147141.ESR1.Ishikawa_C1-5 251 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 341 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 530 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 196 bp overlap
ChIP Ishikawa_M2-5 GSE147141.ESR1.Ishikawa_M2-5 269 bp overlap
ChIP MCF-7 GSE41561.ESR1.MCF-7 214 bp overlap
ChIP MCF-7 GSE148277.ESR1.MCF-7 294 bp overlap
ChIP MCF-7_ARID1A-KO GSE123284.ESR1.MCF-7_ARID1A-KO 151 bp overlap
ChIP MCF-7_ARID1A-KO_clone14 GSE123284.ESR1.MCF-7_ARID1A-KO_clone14 121 bp overlap
ChIP MCF-7_AZD2014 GSE103023.ESR1.MCF-7_AZD2014 137 bp overlap
ChIP MCF-7_D538G GSE148277.ESR1.MCF-7_D538G 246 bp overlap
ChIP MCF-7_D538G_DMSO GSE148277.ESR1.MCF-7_D538G_DMSO 247 bp overlap
ChIP MCF-7_E2-10min-ERalpha GSE94023.ESR1.MCF-7_E2-10min-ERalpha 154 bp overlap
ChIP MCF-7_HC11 GSE102882.ESR1.MCF-7_HC11 196 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 283 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 316 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 221 bp overlap
ChIP MCF-7_Veh_sc GSE117569.ESR1.MCF-7_Veh_sc 255 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 181 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 209 bp overlap
FEZF2 3 datasets
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
GATA1 1 dataset
Motif DE_12h DE_12h-GATA1_MA0035.5 7 bp overlap
GATA3 3 datasets
ChIP MCF-7 GSE122847.GATA3.MCF-7 305 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 222 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 260 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 225 bp overlap
Gfi1B 1 dataset
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR711VWL.HDAC1.K-562 99 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 245 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 275 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 108 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
IRF1 1 dataset
ChIP HAEC_TNFa_4h GSE89970.IRF1.HAEC_TNFa_4h 67 bp overlap
IRF3 1 dataset
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
Irf1 2 datasets
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
KDM1A 2 datasets
ChIP K562 ENCFF128TYE 354 bp overlap
ChIP K562 ENCFF133OLU 277 bp overlap
KLF1 1 dataset
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
KLF11 1 dataset
Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap
KLF12 1 dataset
Motif DE_12h DE_12h-KLF12_MA0742.2 9 bp overlap
KLF13 1 dataset
Motif DE_12h DE_12h-KLF13_MA0657.2 17 bp overlap
KLF14 1 dataset
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KLF16 1 dataset
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
KLF2 1 dataset
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
KLF3 1 dataset
Motif DE_12h DE_12h-KLF3_MA1516.2 10 bp overlap
KLF5 3 datasets
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
ChIP HEK293 GSE88976.KLF5.HEK293 270 bp overlap
ChIP KATO-III GSE51705.KLF5.KATO-III 201 bp overlap
KLF6 1 dataset
Motif DE_12h DE_12h-KLF6_MA1517.2 9 bp overlap
KLF7 1 dataset
Motif DE_12h DE_12h-KLF7_MA1959.2 8 bp overlap
KLF9 3 datasets
ChIP GBM1A GSE62211.KLF9.GBM1A 149 bp overlap
ChIP HEK293 ENCFF588INF 298 bp overlap
ChIP HEK293 ENCSR076EZB.KLF9.HEK293 221 bp overlap
MAFK 1 dataset
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
MGA 1 dataset
Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap
MSANTD3 2 datasets
Motif DE_12h DE_12h-MSANTD3_MA1523.2 7 bp overlap
Motif ES_0h ES_0h-MSANTD3_MA1523.2 7 bp overlap
MTA2 1 dataset
ChIP K-562 ENCSR411UYA.MTA2.K-562 198 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 596 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 165 bp overlap
PBX3 2 datasets
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
Motif ES_0h ES_0h-PBX3_MA1114.2 11 bp overlap
PGR 1 dataset
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 197 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 328 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 228 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 290 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 405 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 596 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 222 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 538 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 143 bp overlap
Prdm14 1 dataset
Motif DE_12h DE_12h-Prdm14_MA1998.2 8 bp overlap
RAD21 6 datasets
ChIP GP5D GSE51234.RAD21.GP5D 288 bp overlap
ChIP H1 ENCFF967OJF 194 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 136 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 260 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 141 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 314 bp overlap
SMARCA4 2 datasets
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 91 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.SMARCA4.MCF-7_ARID1A-KO_4-OHT_clone14 203 bp overlap
SMC3 5 datasets
ChIP HeLa GSE126990.SMC3.HeLa 234 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 234 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 234 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 246 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 251 bp overlap
SP3 1 dataset
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SP8 1 dataset
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
SP9 1 dataset
Motif DE_12h DE_12h-SP9_MA1564.2 10 bp overlap
SREBF2 1 dataset
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
STAG1 3 datasets
ChIP HeLa GSE126990.STAG1.HeLa 429 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 429 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 102 bp overlap
Stat2 2 datasets
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
TBR1 1 dataset
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
TBX18 1 dataset
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
TBX5 3 datasets
ChIP G296S GSE85628.TBX5.G296S 108 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 108 bp overlap
ChIP G296S_4 GSE85628.TBX5.G296S_4 175 bp overlap
TCF12 2 datasets
ChIP Ishikawa ENCFF467DDW 412 bp overlap
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 153 bp overlap
TEAD4 3 datasets
ChIP Ishikawa ENCFF772OTG 265 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 176 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 181 bp overlap
TFAP2C 1 dataset
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
TRPS1 1 dataset
ChIP MCF-7 GSE133072.TRPS1.MCF-7 222 bp overlap
Tbx6 1 dataset
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 206 bp overlap
ZBTB33 5 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 579 bp overlap
ChIP K562 ENCFF427SDV 505 bp overlap
ChIP K562 ENCFF875HLX 536 bp overlap
ChIP MCF-7 ENCFF622BUU 321 bp overlap
ChIP MCF-7 ENCSR231YFE.ZBTB33.MCF-7 353 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 325 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 249 bp overlap
ZFP69B 1 dataset
ChIP HEK293T GSE78099.ZFP69B.HEK293T 121 bp overlap
ZIC4 2 datasets
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
Motif ES_0h ES_0h-ZIC4_MA0751.2 14 bp overlap
ZIM3 2 datasets
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZNF135 1 dataset
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF16 2 datasets
Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap
Motif ES_0h ES_0h-ZNF16_MA1654.2 21 bp overlap
ZNF18 2 datasets
ChIP HEK293 ENCFF066NGR 441 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 281 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF354A 1 dataset
Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap
ZNF384 5 datasets
Motif DE_12h DE_12h-ZNF384_MA1125.2 8 bp overlap
Motif DE_12h DE_12h-ZNF384_MA1125.2 8 bp overlap
ChIP HEK293T ENCFF019DZX 206 bp overlap
ChIP HEK293T ENCSR882ICT.ZNF384.HEK293T 381 bp overlap
ChIP K-562 ENCSR000EFP.ZNF384.K-562 114 bp overlap
ZNF460 2 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF530 1 dataset
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
ZNF682 1 dataset
Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 112 bp overlap
ZNF770 2 datasets
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 71 bp overlap