chr9 : 131,017,004 – 131,017,463

459 bp 95 TFs 1 linked gene

This 459 bp open chromatin element is linked to LAMC3 and is bound by 95 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
LAMC3		7.8 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

95 transcription factors

AR 5 datasets

ChIP prostate GSE56288.AR.prostate 199 bp overlap

ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 185 bp overlap

ChIP prostate_P1 GSE130408.AR.prostate_P1 157 bp overlap

ChIP prostate_P27 GSE130408.AR.prostate_P27 175 bp overlap

ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 216 bp overlap

BCOR 1 dataset

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 450 bp overlap

BHLHE40 1 dataset

ChIP K-562 ENCSR000EGV.BHLHE40.K-562 189 bp overlap

BRD1 1 dataset

ChIP HUES-64 GSE104059.BRD1.HUES-64 231 bp overlap

BRD2 2 datasets

ChIP K-562_iBET-BD1-IFNG GSE138084.BRD2.K-562_iBET-BD1-IFNG 284 bp overlap

ChIP K-562_iBET-IFNG GSE138084.BRD2.K-562_iBET-IFNG 204 bp overlap

BRD3 2 datasets

ChIP K-562_DMSO-IFNG GSE138084.BRD3.K-562_DMSO-IFNG 201 bp overlap

ChIP K-562_iBET-BD1-IFNG GSE138084.BRD3.K-562_iBET-BD1-IFNG 201 bp overlap

BRD4 3 datasets

ChIP K-562_iBET GSE138084.BRD4.K-562_iBET 233 bp overlap

ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 264 bp overlap

ChIP MDA-MB-231 ERP003925.BRD4.MDA-MB-231 135 bp overlap

CDK8 2 datasets

ChIP leiomyoma_PT848 GSE128230.CDK8.leiomyoma_PT848 65 bp overlap

ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 57 bp overlap

CDKN1B 1 dataset

ChIP MDA-MB-231 GSE112444.CDKN1B.MDA-MB-231 211 bp overlap

CHD2 1 dataset

ChIP K-562 ENCSR000EHD.CHD2.K-562 150 bp overlap

CTCF 1 dataset

ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 213 bp overlap

Cebpa 2 datasets

ChIP BLaER1 ENCFF031ISE 327 bp overlap

ChIP BLaER1 ENCFF093OYK 302 bp overlap

E2F6 2 datasets

ChIP H1 ENCFF785DWK 352 bp overlap

ChIP WA01 ENCSR000BSI.E2F6.WA01 145 bp overlap

EP300 1 dataset

ChIP osteoblast ENCSR000AUD.EP300.osteoblast 316 bp overlap

ESR1 1 dataset

ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 304 bp overlap

EZH1 1 dataset

ChIP ProEs_SHEZH2 GSE59087.EZH1.ProEs_SHEZH2 303 bp overlap

EZH2 11 datasets

ChIP GM23248 ENCFF404ZHM 371 bp overlap

ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 459 bp overlap

ChIP MM.1S ENCFF138BXR 439 bp overlap

ChIP ProEs GSE59087.EZH2.ProEs 432 bp overlap

ChIP ProEs_SHCTR GSE59087.EZH2.ProEs_SHCTR 406 bp overlap

ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 364 bp overlap

ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 395 bp overlap

ChIP fibroblast of dermis ENCFF029VZK 459 bp overlap

ChIP fibroblast of lung ENCFF479BAW 459 bp overlap

ChIP fibroblast_DERMAL ENCSR000ASE.EZH2.fibroblast_DERMAL 459 bp overlap

ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 393 bp overlap

EZH2_phosphoT487 2 datasets

ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 459 bp overlap

ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 184 bp overlap

FOS 2 datasets

ChIP myometrium_PT886 GSE128230.FOS.myometrium_PT886 62 bp overlap

ChIP myometrium_PT967 GSE128230.FOS.myometrium_PT967 106 bp overlap

FOXA1 2 datasets

Motif DE_24h DE_24h-FOXA1_MA0148.5 8 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 261 bp overlap

FOXA2 3 datasets

ChIP DE DE-FOXA2-1 456 bp overlap

ChIP DE DE-FOXA2-2 459 bp overlap

Motif DE_24h DE_24h-FOXA2_MA0047.4 8 bp overlap

FOXA3 1 dataset

Motif DE_24h DE_24h-FOXA3_MA1683.2 7 bp overlap

FOXB1 1 dataset

Motif DE_24h DE_24h-FOXB1_MA0845.1 11 bp overlap

FOXC1 1 dataset

Motif DE_24h DE_24h-FOXC1_MA0032.2 11 bp overlap

FOXC2 1 dataset

Motif DE_24h DE_24h-FOXC2_MA0846.2 11 bp overlap

FOXD1 1 dataset

Motif DE_24h DE_24h-FOXD1_MA0031.2 7 bp overlap

FOXF2 1 dataset

Motif DE_24h DE_24h-FOXF2_MA0030.2 9 bp overlap

FOXG1 1 dataset

Motif DE_24h DE_24h-FOXG1_MA0613.1 8 bp overlap

FOXI1 1 dataset

Motif DE_24h DE_24h-FOXI1_MA0042.2 7 bp overlap

FOXK1 1 dataset

Motif DE_24h DE_24h-FOXK1_MA0852.3 7 bp overlap

FOXK2 1 dataset

Motif DE_24h DE_24h-FOXK2_MA1103.3 7 bp overlap

FOXL1 1 dataset

Motif DE_24h DE_24h-FOXL1_MA0033.2 7 bp overlap

FOXN3 1 dataset

Motif DE_24h DE_24h-FOXN3_MA1489.1 8 bp overlap

FOXO4 1 dataset

Motif DE_24h DE_24h-FOXO4_MA0848.1 7 bp overlap

FOXO6 1 dataset

Motif DE_24h DE_24h-FOXO6_MA0849.1 7 bp overlap

FOXP1 1 dataset

Motif DE_24h DE_24h-FOXP1_MA0481.4 7 bp overlap

FOXP2 1 dataset

Motif DE_24h DE_24h-FOXP2_MA0593.2 9 bp overlap

FOXP3 1 dataset

Motif DE_24h DE_24h-FOXP3_MA0850.1 7 bp overlap

FOXP4 1 dataset

Motif DE_24h DE_24h-FOXP4_MA2117.1 7 bp overlap

FOXS1 1 dataset

Motif DE_24h DE_24h-FOXS1_MA2118.1 8 bp overlap

Foxf1 1 dataset

Motif DE_24h DE_24h-Foxf1_MA1606.2 7 bp overlap

Foxj2 1 dataset

Motif DE_24h DE_24h-Foxj2_MA0614.1 8 bp overlap

Foxl2 1 dataset

Motif DE_24h DE_24h-Foxl2_MA1607.2 10 bp overlap

Foxo1 1 dataset

Motif DE_24h DE_24h-Foxo1_MA0480.3 7 bp overlap

Foxo3 1 dataset

Motif DE_24h DE_24h-Foxo3_MA0157.4 7 bp overlap

GATA4 1 dataset

ChIP DE DE-GATA4-2 303 bp overlap

GTF2F1 1 dataset

ChIP K-562 GSE120104.GTF2F1.K-562 228 bp overlap

HNRNPH1 1 dataset

ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 214 bp overlap

HNRNPLL 4 datasets

ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 211 bp overlap

ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 207 bp overlap

ChIP K-562 GSE120104.HNRNPLL.K-562 327 bp overlap

ChIP K-562 ENCSR112RNT.HNRNPLL.K-562 329 bp overlap

HNRNPUL1 1 dataset

ChIP K-562 GSE120104.HNRNPUL1.K-562 214 bp overlap

IRF1 1 dataset

ChIP K-562_EPZ GSE129380.IRF1.K-562_EPZ 229 bp overlap

JUN 1 dataset

ChIP leiomyoma_PT848 GSE128230.JUN.leiomyoma_PT848 98 bp overlap

KDM1A 1 dataset

ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 240 bp overlap

MAX 1 dataset

ChIP K-562 ENCSR000EFV.MAX.K-562 146 bp overlap

MCM3 1 dataset

ChIP K-562 ENCSR990AZC.MCM3.K-562 303 bp overlap

MED12 2 datasets

ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 139 bp overlap

ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 116 bp overlap

NANOG 1 dataset

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 312 bp overlap

NELFE 2 datasets

ChIP K-562_HS GSE112379.NELFE.K-562_HS 277 bp overlap

ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 332 bp overlap

NIPBL 1 dataset

ChIP hESC_activin GSE64758.NIPBL.hESC_activin 194 bp overlap

NRF1 1 dataset

ChIP K-562 ENCSR837EYC.NRF1.K-562 183 bp overlap

OGG1 1 dataset

ChIP HEK293 GSE89017.OGG1.HEK293 289 bp overlap

PCBP1 1 dataset

ChIP K-562 GSE120104.PCBP1.K-562 187 bp overlap

PCGF2 1 dataset

ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 234 bp overlap

POLR2A 5 datasets

ChIP prostate gland ENCFF881OMH 349 bp overlap

ChIP suprapubic skin ENCFF748PRQ 173 bp overlap

ChIP upper lobe of left lung ENCFF199JUI 353 bp overlap

ChIP vagina ENCFF384GAB 336 bp overlap

ChIP vagina ENCFF384GAB 332 bp overlap

POU5F1 3 datasets

ChIP DE_D1 DED1-OCT4_Batch_II 459 bp overlap

ChIP SKM-1 GSE93706.POU5F1.SKM-1 173 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 222 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 446 bp overlap

PTBP1 1 dataset

ChIP K-562 GSE120104.PTBP1.K-562 278 bp overlap

RBM22 1 dataset

ChIP K-562 GSE120104.RBM22.K-562 203 bp overlap

RBM39 1 dataset

ChIP K-562 GSE120104.RBM39.K-562 162 bp overlap

RELA 1 dataset

ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 276 bp overlap

RNF2 1 dataset

ChIP fibroblast GSE139053.RNF2.fibroblast 232 bp overlap

RUNX1 1 dataset

ChIP Jurkat GSE85524.RUNX1.Jurkat 213 bp overlap

SETDB1 1 dataset

ChIP K-562 ENCSR000EWI.SETDB1.K-562 215 bp overlap

SMAD2 4 datasets

ChIP endoderm GSE29422.SMAD2.endoderm 280 bp overlap

ChIP hESC GSE29422.SMAD2.hESC 375 bp overlap

ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 459 bp overlap

ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 304 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 368 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 459 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 459 bp overlap

SMAD2_3 4 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 304 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 459 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 416 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 336 bp overlap

SMAD3 3 datasets

ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 136 bp overlap

ChIP endoderm GSE29422.SMAD3.endoderm 214 bp overlap

ChIP hESC GSE29422.SMAD3.hESC 388 bp overlap

SMAD4 2 datasets

ChIP endoderm GSE29422.SMAD4.endoderm 277 bp overlap

ChIP hESC GSE29422.SMAD4.hESC 363 bp overlap

SNRNP70 2 datasets

ChIP K-562 GSE120104.SNRNP70.K-562 276 bp overlap

ChIP K-562 ENCSR754ZHU.SNRNP70.K-562 269 bp overlap

SRSF3 2 datasets

ChIP K-562 GSE120104.SRSF3.K-562 417 bp overlap

ChIP K-562 ENCSR268QIQ.SRSF3.K-562 322 bp overlap

STAG1 1 dataset

ChIP K-562 ENCSR153HNT.STAG1.K-562 134 bp overlap

SUZ12 4 datasets

ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 403 bp overlap

ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 459 bp overlap

ChIP K-562 ENCSR412CTM.SUZ12.K-562 443 bp overlap

ChIP K-562 ENCSR000AUC.SUZ12.K-562 459 bp overlap

TAF15 2 datasets

ChIP K-562 GSE120104.TAF15.K-562 319 bp overlap

ChIP K-562 ENCSR047LSJ.TAF15.K-562 290 bp overlap

TARDBP 2 datasets

ChIP K-562 GSE120104.TARDBP.K-562 413 bp overlap

ChIP K-562 ENCSR429XTR.TARDBP.K-562 288 bp overlap

THAP1 1 dataset

ChIP K-562 ENCSR000BNN.THAP1.K-562 109 bp overlap

TP53 1 dataset

ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 168 bp overlap

TRIM28 1 dataset

ChIP hESC GSE115387.TRIM28.hESC 280 bp overlap

USF2 1 dataset

ChIP K-562 GSE111469.USF2.K-562 283 bp overlap

XRCC5 1 dataset

ChIP K-562 GSE120104.XRCC5.K-562 444 bp overlap

ZBTB48 1 dataset

ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 265 bp overlap

ZBTB5 1 dataset

ChIP K-562 ENCSR389PWB.ZBTB5.K-562 299 bp overlap

ZBTB7A 1 dataset

ChIP K-562 ENCSR000BME.ZBTB7A.K-562 133 bp overlap

ZKSCAN1 1 dataset

ChIP K-562 ENCSR882ERE.ZKSCAN1.K-562 162 bp overlap

ZNF263 1 dataset

ChIP K-562 ENCSR000EWN.ZNF263.K-562 429 bp overlap

ZNF3 1 dataset

ChIP K-562 ENCSR195QFV.ZNF3.K-562 154 bp overlap