Laminins, a family of extracellular matrix glycoproteins, are the major noncollagenous constituent of basement membranes. They have been implicated in a wide variety of biological processes including cell adhesion, differentiation, migration, signaling, neurite outgrowth and metastasis. Laminins are composed of 3 non identical chains: laminin alpha, beta and gamma (formerly A, B1, and B2, respectively) and they form a cruciform structure consisting of 3 short arms, each formed by a different chain, and a long arm composed of all 3 chains. Each laminin chain is a multidomain protein encoded by a distinct gene. Several isoforms of each chain have been described. Different alpha, beta and gamma chain isomers combine to give rise to different heterotrimeric laminin isoforms which are designated by Arabic numerals in the order of their discovery, i.e. alpha1beta1gamma1 heterotrimer is laminin 1. The biological functions of the different chains and trimer molecules are largely unknown, but some of the chains have been shown to differ with respect to their tissue distribution, presumably reflecting diverse functions in vivo. This gene encodes the gamma chain isoform laminin, gamma 3. The gamma 3 chain is most similar to the gamma 1 chain, and contains all the 6 domains expected of the gamma chain. It is a component of laminin 12. The gamma 3 chain is broadly expressed in skin, heart, lung, and the reproductive tracts. In skin, it is seen within the basement membrane of the dermal-epidermal junction at points of nerve penetration. Gamma 3 is also a prominent element of the apical surface of ciliated epithelial cells of lung, oviduct, epididymis, ductus deferens, and seminiferous tubules. The distribution of gamma 3-containing laminins along ciliated epithelial surfaces suggests that the apical laminins are important in the morphogenesis and structural stability of the ciliated processes of these cells. [provided by RefSeq, Aug 2011]
Transcription factors with Perturb-seq knockdown data for LAMC3. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = LAMC3 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of LAMC3, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr9:130,689,990–130,690,532 | 319.0 kb | Distal (>10kb) Multiome HiCAR | 331 | |
| chr9:130,692,215–130,692,841 | 316.7 kb | Distal (>10kb) Multiome HiCAR | 141 | |
| chr9:130,693,327–130,694,076 | 315.4 kb | Distal (>10kb) Multiome HiCAR | 752 | |
| chr9:130,712,289–130,713,655 | 296.4 kb | Distal (>10kb) Multiome HiCAR | 791 | |
| chr9:130,834,623–130,835,640 | 174.0 kb | Distal (>10kb) Multiome | 715 | |
| chr9:130,940,926–130,941,385 | 67.9 kb | Distal (>10kb) Multiome | 359 | |
| chr9:130,998,218–130,998,819 | 10.7 kb | Distal (>10kb) Multiome | 380 | |
| chr9:131,008,758–131,009,603 | 7 bp | At TSS Multiome | 393 | |
| chr9:131,017,004–131,017,463 | 7.8 kb | Proximal (<10kb) | 95 | |
| chr9:131,096,120–131,097,337 | 87.3 kb | Distal (>10kb) Multiome | 533 | |
| chr9:131,125,092–131,126,077 | 116.3 kb | Distal (>10kb) Multiome | 873 | |
| chr9:131,177,994–131,178,580 | 169.2 kb | Distal (>10kb) Multiome | 304 | |
| chr9:131,276,571–131,278,332 | 269.0 kb | Distal (>10kb) Multiome | 558 | |
| chr9:131,282,624–131,283,561 | 273.8 kb | Distal (>10kb) Multiome | 217 |
Genomic view of the LAMC3 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.