LAMC3
laminin subunit gamma 3 | DKFZp434E202

Laminins, a family of extracellular matrix glycoproteins, are the major noncollagenous constituent of basement membranes. They have been implicated in a wide variety of biological processes including cell adhesion, differentiation, migration, signaling, neurite outgrowth and metastasis. Laminins are composed of 3 non identical chains: laminin alpha, beta and gamma (formerly A, B1, and B2, respectively) and they form a cruciform structure consisting of 3 short arms, each formed by a different chain, and a long arm composed of all 3 chains. Each laminin chain is a multidomain protein encoded by a distinct gene. Several isoforms of each chain have been described. Different alpha, beta and gamma chain isomers combine to give rise to different heterotrimeric laminin isoforms which are designated by Arabic numerals in the order of their discovery, i.e. alpha1beta1gamma1 heterotrimer is laminin 1. The biological functions of the different chains and trimer molecules are largely unknown, but some of the chains have been shown to differ with respect to their tissue distribution, presumably reflecting diverse functions in vivo. This gene encodes the gamma chain isoform laminin, gamma 3. The gamma 3 chain is most similar to the gamma 1 chain, and contains all the 6 domains expected of the gamma chain. It is a component of laminin 12. The gamma 3 chain is broadly expressed in skin, heart, lung, and the reproductive tracts. In skin, it is seen within the basement membrane of the dermal-epidermal junction at points of nerve penetration. Gamma 3 is also a prominent element of the apical surface of ciliated epithelial cells of lung, oviduct, epididymis, ductus deferens, and seminiferous tubules. The distribution of gamma 3-containing laminins along ciliated epithelial surfaces suggests that the apical laminins are important in the morphogenesis and structural stability of the ciliated processes of these cells. [provided by RefSeq, Aug 2011]

Developmental clusters: GC2
Biological processes 14 terms
Expression (TPM)
LAMC3 — as a Regulated Gene

TFs regulating LAMC3 0 TFs

Transcription factors with Perturb-seq knockdown data for LAMC3. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = LAMC3 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to LAMC3

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of LAMC3, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr9:130,689,990–130,690,532 319.0 kb Distal (>10kb) Multiome HiCAR 331
chr9:130,692,215–130,692,841 316.7 kb Distal (>10kb) Multiome HiCAR 141
chr9:130,693,327–130,694,076 315.4 kb Distal (>10kb) Multiome HiCAR 752
chr9:130,712,289–130,713,655 296.4 kb Distal (>10kb) Multiome HiCAR 791
chr9:130,834,623–130,835,640 174.0 kb Distal (>10kb) Multiome 715
chr9:130,940,926–130,941,385 67.9 kb Distal (>10kb) Multiome 359
chr9:130,998,218–130,998,819 10.7 kb Distal (>10kb) Multiome 380
chr9:131,008,758–131,009,603 7 bp At TSS Multiome 393
chr9:131,017,004–131,017,463 7.8 kb Proximal (<10kb) 95
chr9:131,096,120–131,097,337 87.3 kb Distal (>10kb) Multiome 533
chr9:131,125,092–131,126,077 116.3 kb Distal (>10kb) Multiome 873
chr9:131,177,994–131,178,580 169.2 kb Distal (>10kb) Multiome 304
chr9:131,276,571–131,278,332 269.0 kb Distal (>10kb) Multiome 558
chr9:131,282,624–131,283,561 273.8 kb Distal (>10kb) Multiome 217

Genome Browser

Genomic view of the LAMC3 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr9:130,679,990 – 131,293,561
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq