chr9 : 93,948,645 – 93,949,108
463 bp 65 TFs 4 linked genes
This 463 bp open chromatin element is linked to 4 target genes and is bound by 65 transcription factors.
Linked Genes
4 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
BARX1 6.2 kb Proximal Proximity
BARX1-DT 6.5 kb Proximal Proximity
PTPDC1 81.8 kb Distal Multiome
MIRLET7A1HG 227.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:93,943,645 – 93,954,108
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 463 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 463 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 292 bp overlap
BRD4 6 datasets
ChIP K-562_iBET GSE138084.BRD4.K-562_iBET 73 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 215 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 404 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 151 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 199 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 50 bp overlap
CHD1 2 datasets
ChIP WA01 ENCSR000AQK.CHD1.WA01 167 bp overlap
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 164 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 153 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 463 bp overlap
CTCF 2 datasets
ChIP neural ENCSR822CEA.CTCF.neural 72 bp overlap
ChIP neural cell ENCFF335ADI 178 bp overlap
E2F6 3 datasets
ChIP H1 ENCFF785DWK 451 bp overlap
ChIP H1 ENCFF785DWK 100 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 188 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000AUQ.EP300.WA01 167 bp overlap
ESR1 2 datasets
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 337 bp overlap
ChIP MCF-7_Y537S_DMSO GSE148277.ESR1.MCF-7_Y537S_DMSO 207 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 463 bp overlap
EZH2 31 datasets
ChIP A673 ENCFF790MVL 411 bp overlap
ChIP A673 ENCFF955JRZ 411 bp overlap
ChIP A673 ENCFF955JRZ 208 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 270 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 130 bp overlap
ChIP DU145_SH4 GSE135623.EZH2.DU145_SH4 155 bp overlap
ChIP GM23338 ENCFF613YON 463 bp overlap
ChIP GM23338 ENCFF886DXX 67 bp overlap
ChIP H1 ENCFF232NZA 463 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 57 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 341 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 463 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 274 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 463 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 174 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 388 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 463 bp overlap
ChIP fibroblast of lung ENCFF479BAW 124 bp overlap
ChIP fibroblast_DERMAL ENCSR000ASE.EZH2.fibroblast_DERMAL 463 bp overlap
ChIP hepatocyte ENCFF118DKH 200 bp overlap
ChIP hepatocyte ENCFF118DKH 107 bp overlap
ChIP hepatocyte ENCFF552DZB 463 bp overlap
ChIP hepatocyte ENCFF552DZB 463 bp overlap
ChIP keratinocyte ENCFF070STK 252 bp overlap
ChIP keratinocyte ENCFF070STK 463 bp overlap
ChIP keratinocyte ENCFF070STK 270 bp overlap
ChIP keratinocyte ENCFF070STK 60 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 133 bp overlap
ChIP neural cell ENCFF610EPB 81 bp overlap
ChIP neural progenitor cell ENCFF018MKA 463 bp overlap
ChIP neural progenitor cell ENCFF472NFV 463 bp overlap
EZH2_phosphoT487 1 dataset
ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 463 bp overlap
FOXP1 1 dataset
ChIP WTC11 ENCFF338WGC 398 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 360 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 73 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 174 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 463 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 341 bp overlap
HEXIM1 2 datasets
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 73 bp overlap
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 320 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 112 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 463 bp overlap
HNRNPLL 2 datasets
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 187 bp overlap
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 383 bp overlap
INO80 2 datasets
ChIP Hep-G2 GSE97411.INO80.Hep-G2 463 bp overlap
ChIP Hep-G2 GSE107730.INO80.Hep-G2 463 bp overlap
JARID2 4 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 463 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 463 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 284 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 121 bp overlap
JUN 4 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 463 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 371 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 279 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 463 bp overlap
KDM4A 6 datasets
ChIP H1 ENCFF078LED 222 bp overlap
ChIP H1 ENCFF078LED 388 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 463 bp overlap
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 400 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 316 bp overlap
ChIP hiPSC_IID12 GSE106870.KDM4A.hiPSC_IID12 213 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 297 bp overlap
MAX 1 dataset
ChIP WTC11 ENCFF223QFY 258 bp overlap
MTF2 1 dataset
ChIP DU145_CTR GSE135623.MTF2.DU145_CTR 71 bp overlap
MYCN 1 dataset
ChIP NB-1643 GSE138295.MYCN.NB-1643 284 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 193 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 463 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 219 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 311 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 265 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 215 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 285 bp overlap
PCBP1 2 datasets
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 255 bp overlap
ChIP Hep-G2 ENCSR872EVQ.PCBP1.Hep-G2 218 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 463 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 463 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 463 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 463 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 463 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 360 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 321 bp overlap
REST 4 datasets
ChIP hiPSC_IA12 GSE106870.REST.hiPSC_IA12 242 bp overlap
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 261 bp overlap
ChIP hiPSC_IIA11 GSE106870.REST.hiPSC_IIA11 228 bp overlap
ChIP hiPSC_IID12 GSE106870.REST.hiPSC_IID12 282 bp overlap
RNF2 2 datasets
ChIP H1 ENCFF239FFS 145 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 287 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 463 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 463 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 463 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 463 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 277 bp overlap
SMAD2_3 2 datasets
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 420 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 463 bp overlap
SMARCA4 1 dataset
ChIP hiPSC GSE124903.SMARCA4.hiPSC 387 bp overlap
SMARCC1 1 dataset
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 463 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 334 bp overlap
SP1 2 datasets
ChIP WTC11 ENCFF688PEU 385 bp overlap
ChIP WTC11 ENCFF688PEU 70 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 463 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 273 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 212 bp overlap
SUZ12 4 datasets
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 259 bp overlap
ChIP H1 ENCFF881NFR 463 bp overlap
ChIP NT2/D1 ENCFF574SXS 463 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 463 bp overlap
TAF15 1 dataset
ChIP K-562 ENCSR047LSJ.TAF15.K-562 208 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 340 bp overlap
TEAD4 1 dataset
ChIP ESC S26-ESC-d0-TEAD4-exp1 256 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 463 bp overlap
TRIM25 2 datasets
ChIP BT-549 GSE79588.TRIM25.BT-549 55 bp overlap
ChIP BT-549 GSE79588.TRIM25.BT-549 225 bp overlap
USF2 2 datasets
ChIP K-562 GSE111469.USF2.K-562 187 bp overlap
ChIP K-562 GSE111469.USF2.K-562 127 bp overlap
ZBTB48 2 datasets
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 80 bp overlap
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 261 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 451 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 184 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 132 bp overlap
ZNF800 1 dataset
ChIP Hep-G2 ENCSR701WPG.ZNF800.Hep-G2 157 bp overlap
ZNF891 1 dataset
ChIP Hep-G2 ENCSR020CLV.ZNF891.Hep-G2 184 bp overlap
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