chr9 : 18,422,506 – 18,423,209
703 bp 119 TFs 0 linked genes
This 703 bp open chromatin element has no linked target genes and is bound by 119 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:18,417,506 – 18,428,209
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
119 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 154 bp overlap
BARX1 2 datasets
Motif DE_60h DE_60h-BARX1_MA0875.2 6 bp overlap
Motif DE_72h DE_72h-BARX1_MA0875.2 6 bp overlap
BRCA1 1 dataset
ChIP K-562 ENCSR223MLH.BRCA1.K-562 232 bp overlap
BRD2 2 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 240 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 116 bp overlap
BRD4 1 dataset
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 267 bp overlap
BSX 2 datasets
Motif DE_60h DE_60h-BSX_MA0876.2 6 bp overlap
Motif DE_72h DE_72h-BSX_MA0876.2 6 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 159 bp overlap
CTCF 4 datasets
Motif DE_48h DE_48h-CTCF_MA1929.2 31 bp overlap
Motif DE_60h DE_60h-CTCF_MA1929.2 31 bp overlap
Motif DE_72h DE_72h-CTCF_MA1929.2 31 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 167 bp overlap
Crx 1 dataset
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
DLX1 2 datasets
Motif DE_60h DE_60h-DLX1_MA0879.3 6 bp overlap
Motif DE_72h DE_72h-DLX1_MA0879.3 6 bp overlap
DLX6 2 datasets
Motif DE_60h DE_60h-DLX6_MA0882.2 6 bp overlap
Motif DE_72h DE_72h-DLX6_MA0882.2 6 bp overlap
DPRX 1 dataset
Motif DE_60h DE_60h-DPRX_MA1480.2 9 bp overlap
Dlx2 2 datasets
Motif DE_60h DE_60h-Dlx2_MA0885.3 8 bp overlap
Motif DE_72h DE_72h-Dlx2_MA0885.3 8 bp overlap
Dlx3 2 datasets
Motif DE_60h DE_60h-Dlx3_MA0880.2 6 bp overlap
Motif DE_72h DE_72h-Dlx3_MA0880.2 6 bp overlap
Dlx4 2 datasets
Motif DE_60h DE_60h-Dlx4_MA0881.2 6 bp overlap
Motif DE_72h DE_72h-Dlx4_MA0881.2 6 bp overlap
Dlx5 2 datasets
Motif DE_60h DE_60h-Dlx5_MA1476.3 8 bp overlap
Motif DE_72h DE_72h-Dlx5_MA1476.3 8 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 315 bp overlap
ERF 1 dataset
Motif DE_60h DE_60h-ERF_MA0760.2 9 bp overlap
ERF::FOXI1 1 dataset
Motif DE_60h DE_60h-ERFFOXI1_MA1935.2 10 bp overlap
ERF::NHLH1 1 dataset
Motif DE_60h DE_60h-ERFNHLH1_MA1938.2 16 bp overlap
ESR1 1 dataset
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 125 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 466 bp overlap
ETS1 1 dataset
Motif DE_60h DE_60h-ETS1_MA0098.4 9 bp overlap
ETS2 1 dataset
Motif DE_60h DE_60h-ETS2_MA1484.2 9 bp overlap
ETV2 1 dataset
Motif DE_60h DE_60h-ETV2_MA0762.2 9 bp overlap
ETV2::FOXI1 1 dataset
Motif DE_60h DE_60h-ETV2FOXI1_MA1942.2 11 bp overlap
ETV3 1 dataset
Motif DE_60h DE_60h-ETV3_MA0763.2 9 bp overlap
ETV4 1 dataset
Motif DE_60h DE_60h-ETV4_MA0764.4 9 bp overlap
ETV5 1 dataset
Motif DE_60h DE_60h-ETV5_MA0765.4 9 bp overlap
EZH2 1 dataset
ChIP LNCaP GSE39459.EZH2.LNCaP 153 bp overlap
FEV 1 dataset
Motif DE_60h DE_60h-FEV_MA0156.4 9 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 252 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 141 bp overlap
FLI1 2 datasets
Motif DE_60h DE_60h-FLI1_MA0475.3 9 bp overlap
ChIP SEM GSE117864.FLI1.SEM 51 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 253 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 509 bp overlap
ChIP DE DE-FOXA2-2 460 bp overlap
GATA1::TAL1 3 datasets
Motif DE_48h DE_48h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_60h DE_60h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 1 dataset
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 186 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 501 bp overlap
ChIP DE DE-GATA4-2 645 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 280 bp overlap
ChIP foregut GSE117136.GATA4.foregut 462 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 436 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 424 bp overlap
ChIP DE DE-GATA6-2 664 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 365 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 613 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 441 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 518 bp overlap
ChIP foregut GSE117136.GATA6.foregut 518 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 266 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 308 bp overlap
GBX2 2 datasets
Motif DE_60h DE_60h-GBX2_MA0890.2 6 bp overlap
Motif DE_72h DE_72h-GBX2_MA0890.2 6 bp overlap
GRHL2 1 dataset
Motif DE_60h DE_60h-GRHL2_MA1105.3 8 bp overlap
GSC 1 dataset
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
HESX1 2 datasets
Motif DE_60h DE_60h-HESX1_MA0894.2 6 bp overlap
Motif DE_72h DE_72h-HESX1_MA0894.2 6 bp overlap
HOXA6 2 datasets
Motif DE_60h DE_60h-HOXA6_MA1497.2 7 bp overlap
Motif DE_72h DE_72h-HOXA6_MA1497.2 7 bp overlap
HOXA7 2 datasets
Motif DE_60h DE_60h-HOXA7_MA1498.3 6 bp overlap
Motif DE_72h DE_72h-HOXA7_MA1498.3 6 bp overlap
HOXB6 2 datasets
Motif DE_60h DE_60h-HOXB6_MA1500.2 7 bp overlap
Motif DE_72h DE_72h-HOXB6_MA1500.2 7 bp overlap
HOXB7 2 datasets
Motif DE_60h DE_60h-HOXB7_MA1501.2 7 bp overlap
Motif DE_72h DE_72h-HOXB7_MA1501.2 7 bp overlap
HOXB8 2 datasets
Motif DE_60h DE_60h-HOXB8_MA1502.2 7 bp overlap
Motif DE_72h DE_72h-HOXB8_MA1502.2 7 bp overlap
HOXD8 2 datasets
Motif DE_60h DE_60h-HOXD8_MA0910.3 7 bp overlap
Motif DE_72h DE_72h-HOXD8_MA0910.3 7 bp overlap
HOXD9 2 datasets
Motif DE_60h DE_60h-HOXD9_MA0913.3 9 bp overlap
Motif DE_72h DE_72h-HOXD9_MA0913.3 9 bp overlap
HSF1 1 dataset
Motif DE_60h DE_60h-HSF1_MA0486.2 13 bp overlap
HSF2 1 dataset
Motif DE_60h DE_60h-HSF2_MA0770.1 13 bp overlap
HSF4 1 dataset
Motif DE_60h DE_60h-HSF4_MA0771.1 13 bp overlap
Hand1::Tcf3 1 dataset
Motif DE_60h DE_60h-Hand1Tcf3_MA0092.2 9 bp overlap
Hmx1 2 datasets
Motif DE_60h DE_60h-Hmx1_MA0896.2 9 bp overlap
Motif DE_72h DE_72h-Hmx1_MA0896.2 9 bp overlap
Hmx2 2 datasets
Motif DE_60h DE_60h-Hmx2_MA0897.2 15 bp overlap
Motif DE_72h DE_72h-Hmx2_MA0897.2 15 bp overlap
Hmx3 2 datasets
Motif DE_60h DE_60h-Hmx3_MA0898.2 9 bp overlap
Motif DE_72h DE_72h-Hmx3_MA0898.2 9 bp overlap
IKZF2 1 dataset
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
LBX2 2 datasets
Motif DE_60h DE_60h-LBX2_MA0699.2 6 bp overlap
Motif DE_72h DE_72h-LBX2_MA0699.2 6 bp overlap
LHX2 2 datasets
Motif DE_60h DE_60h-LHX2_MA0700.3 6 bp overlap
Motif DE_72h DE_72h-LHX2_MA0700.3 6 bp overlap
MED 1 dataset
ChIP SEM GSE83671.MED.SEM 115 bp overlap
MEIS1 4 datasets
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MGA::EVX1 5 datasets
Motif DE_48h DE_48h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_60h DE_60h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_60h DE_60h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_72h DE_72h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_72h DE_72h-MGAEVX1_MA1960.2 11 bp overlap
MITF 2 datasets
ChIP melanocyte_BRAFV600E GSE50681.MITF.melanocyte_BRAFV600E 209 bp overlap
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 90 bp overlap
MSX1 2 datasets
Motif DE_60h DE_60h-MSX1_MA0666.3 6 bp overlap
Motif DE_72h DE_72h-MSX1_MA0666.3 6 bp overlap
MSX2 2 datasets
Motif DE_60h DE_60h-MSX2_MA0708.3 6 bp overlap
Motif DE_72h DE_72h-MSX2_MA0708.3 6 bp overlap
MYB 3 datasets
Motif DE_48h DE_48h-MYB_MA0100.4 6 bp overlap
Motif DE_60h DE_60h-MYB_MA0100.4 6 bp overlap
Motif DE_72h DE_72h-MYB_MA0100.4 6 bp overlap
Msx3 2 datasets
Motif DE_60h DE_60h-Msx3_MA0709.2 6 bp overlap
Motif DE_72h DE_72h-Msx3_MA0709.2 6 bp overlap
NCOA1 1 dataset
ChIP MCF-7 ERP000901.NCOA1.MCF-7 114 bp overlap
NFATC3 1 dataset
Motif DE_60h DE_60h-NFATC3_MA0625.3 6 bp overlap
NFIL3 2 datasets
Motif DE_60h DE_60h-NFIL3_MA0025.3 9 bp overlap
Motif DE_72h DE_72h-NFIL3_MA0025.3 9 bp overlap
NR2C2 3 datasets
Motif DE_48h DE_48h-NR2C2_MA0504.2 14 bp overlap
Motif DE_60h DE_60h-NR2C2_MA0504.2 14 bp overlap
Motif DE_72h DE_72h-NR2C2_MA0504.2 14 bp overlap
NR2F1 3 datasets
Motif DE_48h DE_48h-NR2F1_MA1537.2 13 bp overlap
Motif DE_60h DE_60h-NR2F1_MA1537.2 13 bp overlap
Motif DE_72h DE_72h-NR2F1_MA1537.2 13 bp overlap
NR2F2 1 dataset
ChIP liver ENCSR168SMX.NR2F2.liver 513 bp overlap
NR3C1 1 dataset
ChIP HeLa-B2_GRKD_TA_TNFA GSE24518.NR3C1.HeLa-B2_GRKD_TA_TNFA 122 bp overlap
Nfatc1 1 dataset
Motif DE_60h DE_60h-Nfatc1_MA0624.3 6 bp overlap
Nkx2-1 3 datasets
Motif DE_48h DE_48h-Nkx2-1_MA1994.2 7 bp overlap
Motif DE_60h DE_60h-Nkx2-1_MA1994.2 7 bp overlap
Motif DE_72h DE_72h-Nkx2-1_MA1994.2 7 bp overlap
Nobox 2 datasets
Motif DE_60h DE_60h-Nobox_MA0125.2 6 bp overlap
Motif DE_72h DE_72h-Nobox_MA0125.2 6 bp overlap
Nr2f6 3 datasets
Motif DE_48h DE_48h-Nr2f6_MA0677.2 13 bp overlap
Motif DE_60h DE_60h-Nr2f6_MA0677.2 13 bp overlap
Motif DE_72h DE_72h-Nr2f6_MA0677.2 13 bp overlap
OSR2 1 dataset
Motif DE_60h DE_60h-OSR2_MA1646.2 8 bp overlap
OTX1 1 dataset
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 193 bp overlap
PITX1 1 dataset
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
PKNOX2 1 dataset
Motif DE_60h DE_60h-PKNOX2_MA0783.1 12 bp overlap
PPARA::RXRA 2 datasets
Motif DE_48h DE_48h-PPARARXRA_MA1148.2 17 bp overlap
Motif DE_60h DE_60h-PPARARXRA_MA1148.2 17 bp overlap
PRDM1 3 datasets
Motif DE_48h DE_48h-PRDM1_MA0508.4 7 bp overlap
Motif DE_60h DE_60h-PRDM1_MA0508.4 7 bp overlap
Motif DE_72h DE_72h-PRDM1_MA0508.4 7 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 208 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 290 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 135 bp overlap
Pgr 2 datasets
Motif DE_60h DE_60h-Pgr_MA2323.1 17 bp overlap
Motif DE_72h DE_72h-Pgr_MA2323.1 17 bp overlap
Pparg::Rxra 1 dataset
Motif DE_60h DE_60h-PpargRxra_MA0065.3 13 bp overlap
RAX 2 datasets
Motif DE_60h DE_60h-RAX_MA0718.2 6 bp overlap
Motif DE_72h DE_72h-RAX_MA0718.2 6 bp overlap
RBPJ 2 datasets
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
RHOXF1 1 dataset
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
RUNX1 1 dataset
ChIP MV4-11 GSE79899.RUNX1.MV4-11 83 bp overlap
SMAD2 1 dataset
Motif DE_60h DE_60h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 570 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 283 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 357 bp overlap
SMARCA4 4 datasets
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 218 bp overlap
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 348 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 678 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 272 bp overlap
SMARCC1 1 dataset
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 703 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 366 bp overlap
SOX21 3 datasets
Motif DE_48h DE_48h-SOX21_MA0866.1 15 bp overlap
Motif DE_60h DE_60h-SOX21_MA0866.1 15 bp overlap
Motif DE_72h DE_72h-SOX21_MA0866.1 15 bp overlap
SPDEF 1 dataset
Motif DE_60h DE_60h-SPDEF_MA0686.2 10 bp overlap
SPIC 1 dataset
Motif DE_60h DE_60h-SPIC_MA0687.2 13 bp overlap
STAT1 1 dataset
ChIP HeLa-S3 ENCSR000EZK.STAT1.HeLa-S3 223 bp overlap
STAT3 1 dataset
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 292 bp overlap
Sox1 3 datasets
Motif DE_48h DE_48h-Sox1_MA0870.1 15 bp overlap
Motif DE_60h DE_60h-Sox1_MA0870.1 15 bp overlap
Motif DE_72h DE_72h-Sox1_MA0870.1 15 bp overlap
TEAD4 3 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 254 bp overlap
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 112 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 254 bp overlap
TFCP2 1 dataset
Motif DE_60h DE_60h-TFCP2_MA1968.2 9 bp overlap
TGIF1 1 dataset
Motif DE_60h DE_60h-TGIF1_MA0796.1 12 bp overlap
TGIF2 1 dataset
Motif DE_60h DE_60h-TGIF2_MA0797.1 12 bp overlap
THRB 6 datasets
Motif DE_48h DE_48h-THRB_MA1574.2 13 bp overlap
Motif DE_48h DE_48h-THRB_MA1576.2 18 bp overlap
Motif DE_60h DE_60h-THRB_MA1574.2 13 bp overlap
Motif DE_60h DE_60h-THRB_MA1576.2 18 bp overlap
Motif DE_72h DE_72h-THRB_MA1574.2 13 bp overlap
Motif DE_72h DE_72h-THRB_MA1576.2 18 bp overlap
ZBTB26 1 dataset
Motif DE_60h DE_60h-ZBTB26_MA1579.2 8 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 165 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 158 bp overlap
ZNF354C 3 datasets
Motif DE_48h DE_48h-ZNF354C_MA0130.1 6 bp overlap
Motif DE_60h DE_60h-ZNF354C_MA0130.1 6 bp overlap
Motif DE_72h DE_72h-ZNF354C_MA0130.1 6 bp overlap
ZNF573 1 dataset
ChIP HEK293T GSE78099.ZNF573.HEK293T 185 bp overlap
ZNF684 1 dataset
Motif DE_60h DE_60h-ZNF684_MA1600.2 14 bp overlap
ZNF75D 3 datasets
Motif DE_48h DE_48h-ZNF75D_MA1601.2 12 bp overlap
Motif DE_60h DE_60h-ZNF75D_MA1601.2 12 bp overlap
Motif DE_72h DE_72h-ZNF75D_MA1601.2 12 bp overlap
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