chr1 : 174,954,158 174,954,385
227 bp 80 TFs 1 linked gene
This 227 bp open chromatin element is linked to RABGAP1L-AS1 and is bound by 80 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
RABGAP1L-AS1 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:174,949,158 – 174,959,385
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
80 transcription factors
Source
Cell type
AHDC1 1 dataset
ChIP HepG2 ENCFF069FSH 80 bp overlap
AHR 1 dataset
ChIP GM01310_3MC GSE116632.AHR.GM01310_3MC 110 bp overlap
AR 1 dataset
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 171 bp overlap
ARID1A 2 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 100 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 137 bp overlap
ARID1B 1 dataset
ChIP Hep-G2 GSE69566.ARID1B.Hep-G2 205 bp overlap
ARID3A 2 datasets
ChIP Hep-G2 ENCSR000EDP.ARID3A.Hep-G2 117 bp overlap
ChIP HepG2 ENCFF341DES 64 bp overlap
ASCL1 1 dataset
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 122 bp overlap
ASH2L 1 dataset
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 227 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 227 bp overlap
ATF2 4 datasets
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 175 bp overlap
ChIP HepG2 ENCFF955VER 216 bp overlap
ChIP K-562 ENCSR869IUD.ATF2.K-562 142 bp overlap
ChIP K562 ENCFF139ZZG 202 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 216 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 125 bp overlap
BCL3 1 dataset
ChIP GM12878 ENCFF854PAY 181 bp overlap
BRD4 10 datasets
ChIP CLL_patient2_4h_CpG GSE109411.BRD4.CLL_patient2_4h_CpG 112 bp overlap
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 197 bp overlap
ChIP GM15850_PA1_JQ1 GSE99402.BRD4.GM15850_PA1_JQ1 200 bp overlap
ChIP MM1-S_JQ1_5UM GSE42355.BRD4.MM1-S_JQ1_5UM 122 bp overlap
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 227 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 227 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 227 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 227 bp overlap
ChIP NCI-H2171_DMSO GSE49224.BRD4.NCI-H2171_DMSO 202 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 187 bp overlap
CBFB 1 dataset
ChIP GM12878 ENCSR860UHK.CBFB.GM12878 150 bp overlap
CDX2 1 dataset
ChIP LS180 GSE31939.CDX2.LS180 128 bp overlap
CREB1 2 datasets
ChIP HepG2 ENCFF576ERP 161 bp overlap
ChIP HepG2 ENCFF576ERP 227 bp overlap
CREM 1 dataset
ChIP GM12878 ENCSR839XZU.CREM.GM12878 120 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCFF692SMY 129 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 227 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 158 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 227 bp overlap
EP300 1 dataset
ChIP neural cell ENCFF442QNK 227 bp overlap
ESR1 3 datasets
ChIP Ishikawa_E2 GSE109891.ESR1.Ishikawa_E2 93 bp overlap
ChIP breast-cancer_3487 GSE126004.ESR1.breast-cancer_3487 172 bp overlap
ChIP breast_tumor_BADOUTCOME GSE40867.ESR1.breast_tumor_BADOUTCOME 220 bp overlap
FOXA1 38 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 207 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 183 bp overlap
ChIP A-549 ENCSR000BPX.FOXA1.A-549 186 bp overlap
ChIP A-549 ENCSR000BRD.FOXA1.A-549 155 bp overlap
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 135 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 227 bp overlap
ChIP HepG2 ENCFF207NVJ 174 bp overlap
ChIP HepG2 ENCFF740VZW 156 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 164 bp overlap
ChIP LNCaP_1F5 GSE30623.FOXA1.LNCaP_1F5 163 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.FOXA1.LNCaP_1F5_SIFOXA1 220 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 227 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 165 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 227 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 206 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 213 bp overlap
ChIP MCF-7 GSE60270.FOXA1.MCF-7 156 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 149 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 227 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 194 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 141 bp overlap
ChIP MCF-7_estrogen_ab1 GSE112969.FOXA1.MCF-7_estrogen_ab1 206 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 227 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 227 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 227 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 227 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 227 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 168 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 208 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 152 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 216 bp overlap
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 200 bp overlap
ChIP breast_tumor_Female_2 GSE104399.FOXA1.breast_tumor_Female_2 144 bp overlap
ChIP liver ENCSR324RCI.FOXA1.liver 227 bp overlap
ChIP liver ERP002306.FOXA1.liver 148 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 227 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 227 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 89 bp overlap
FOXA2 11 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 186 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 159 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 152 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 164 bp overlap
ChIP DE DE-FOXA2-1 227 bp overlap
ChIP DE DE-FOXA2-2 227 bp overlap
ChIP liver ENCFF888VJF 227 bp overlap
ChIP liver ENCSR080XEY.FOXA2.liver 227 bp overlap
ChIP liver ENCSR310NYI.FOXA2.liver 148 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 204 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 227 bp overlap
FOXK1 1 dataset
ChIP Hep-G2 ENCSR603BJQ.FOXK1.Hep-G2 141 bp overlap
FOXP1 3 datasets
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 168 bp overlap
ChIP SU-DHL-6 ERP010999.FOXP1.SU-DHL-6 63 bp overlap
ChIP U2932 ERP010999.FOXP1.U2932 77 bp overlap
FOXP4 1 dataset
ChIP Hep-G2 ENCSR232LLP.FOXP4.Hep-G2 184 bp overlap
GABPA 1 dataset
ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 138 bp overlap
GATA2 1 dataset
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 227 bp overlap
GATA4 3 datasets
ChIP foregut GSE117136.GATA4.foregut 227 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 227 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 227 bp overlap
GATA6 7 datasets
ChIP ESO-26 GSE132680.GATA6.ESO-26 227 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 154 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 144 bp overlap
ChIP foregut GSE117136.GATA6.foregut 227 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 227 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 227 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 227 bp overlap
GATAD2B 1 dataset
ChIP GM12878 ENCFF781IAU 80 bp overlap
HDAC1 1 dataset
ChIP HepG2 ENCFF304IEJ 93 bp overlap
HMGXB3 1 dataset
ChIP HepG2 ENCFF161CYU 227 bp overlap
HNF4A 2 datasets
ChIP GP5D GSE51234.HNF4A.GP5D 93 bp overlap
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 150 bp overlap
HOXB13 1 dataset
ChIP prostate-cancer_PDX_189-4 GSE130408.HOXB13.prostate-cancer_PDX_189-4 65 bp overlap
IKZF2 1 dataset
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 227 bp overlap
JUNB 2 datasets
ChIP GM12878 ENCFF667EJQ 75 bp overlap
ChIP GM12878 ENCSR897MMC.JUNB.GM12878 156 bp overlap
KDM1A 3 datasets
ChIP HepG2 ENCFF240UWG 227 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 99 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 216 bp overlap
KLF5 1 dataset
ChIP ESO-26 GSE132680.KLF5.ESO-26 227 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 141 bp overlap
MAX 3 datasets
ChIP NCI-H128 GSE41105.MAX.NCI-H128 227 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 227 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 227 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 155 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 184 bp overlap
NEUROD1 2 datasets
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 186 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 186 bp overlap
NFIC 1 dataset
ChIP GM12878 ENCFF259FWL 99 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 227 bp overlap
NR2F1 1 dataset
ChIP GM12878 ENCSR514VYD.NR2F1.GM12878 105 bp overlap
NR3C1 1 dataset
ChIP LNCaP_1F5_SIFOXA1 GSE30623.NR3C1.LNCaP_1F5_SIFOXA1 110 bp overlap
PAXIP1 3 datasets
ChIP Hep-G2 ENCSR530ARJ.PAXIP1.Hep-G2 227 bp overlap
ChIP HepG2 ENCFF526NOJ 76 bp overlap
ChIP HepG2 ENCFF526NOJ 227 bp overlap
PBX2 1 dataset
ChIP HepG2 ENCFF225AJT 227 bp overlap
PDX1 4 datasets
ChIP hESC GSE58685.PDX1.hESC 135 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 204 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 135 bp overlap
ChIP islet ERP001456.PDX1.islet 182 bp overlap
PKNOX1 3 datasets
ChIP GM12878 ENCFF589FCY 193 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 227 bp overlap
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 227 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 227 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 200 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 220 bp overlap
ChIP neural cell ENCFF882LXX 227 bp overlap
RFX1 5 datasets
ChIP K-562 ENCSR968GIB.RFX1.K-562 227 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 211 bp overlap
ChIP K562 ENCFF421AVO 227 bp overlap
ChIP MCF-7 ENCFF782EZS 227 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 220 bp overlap
RFX3 1 dataset
ChIP Hep-G2 ENCSR633OVO.RFX3.Hep-G2 200 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 133 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 227 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 227 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 227 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 171 bp overlap
SMARCA4 8 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 61 bp overlap
ChIP A-549_AG15680 GSE132290.SMARCA4.A-549_AG15680 155 bp overlap
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 213 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 227 bp overlap
ChIP A-549_AG15724 GSE132290.SMARCA4.A-549_AG15724 93 bp overlap
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 219 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 173 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 213 bp overlap
SOX6 2 datasets
ChIP Hep-G2 ENCSR766TSU.SOX6.Hep-G2 180 bp overlap
ChIP HepG2 ENCFF767OCK 92 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 177 bp overlap
STAT1 1 dataset
ChIP HeLa-S3 ENCSR000EZK.STAT1.HeLa-S3 183 bp overlap
STAT3 8 datasets
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 186 bp overlap
ChIP T-47D_JC4741 GSE126004.STAT3.T-47D_JC4741 212 bp overlap
ChIP T-47D_JC4753 GSE126004.STAT3.T-47D_JC4753 186 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 227 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 227 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 155 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 227 bp overlap
ChIP breast-cancer_3487 GSE126004.STAT3.breast-cancer_3487 227 bp overlap
TCF7L2 1 dataset
ChIP HepG2 ENCFF510OLG 111 bp overlap
YY1 1 dataset
ChIP liver ENCSR994YLZ.YY1.liver 207 bp overlap
ZBED1 2 datasets
ChIP GM12878 ENCFF007OSW 59 bp overlap
ChIP GM12878 ENCFF007OSW 227 bp overlap
ZEB1 1 dataset
ChIP Hep-G2 ENCSR000BVN.ZEB1.Hep-G2 172 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR004GKA.ZEB2.K-562 211 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 147 bp overlap
ZNF573 1 dataset
ChIP HEK293T GSE78099.ZNF573.HEK293T 218 bp overlap