chr1 : 171,431,769 – 171,432,338
569 bp 65 TFs 3 linked genes
This 569 bp open chromatin element is linked to PRRC2C, FMO4, and ENSG00000231424 and is bound by 65 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PRRC2C 53.4 kb Distal Multiome
FMO4 118.0 kb Distal Multiome
ENSG00000231424 180.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:171,426,769 – 171,437,338
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
AR 4 datasets
ChIP DU145_ARQ6540X GSE47987.AR.DU145_ARQ6540X 192 bp overlap
ChIP DU145_FOXA1_ARQ6540X GSE47987.AR.DU145_FOXA1_ARQ6540X 121 bp overlap
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 169 bp overlap
ChIP VCaP_SH2_DHT GSE79128.AR.VCaP_SH2_DHT 134 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 301 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 439 bp overlap
ChIP H1 ENCFF399KAM 233 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 499 bp overlap
BCL11A 3 datasets
ChIP H1 ENCFF836SSR 177 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 177 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 107 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 232 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 197 bp overlap
BRD4 1 dataset
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 128 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 397 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 142 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 161 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 261 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 220 bp overlap
ChIP hESC GSE17917.EP300.hESC 293 bp overlap
ESR1 1 dataset
ChIP MCF-7_estradiol-DHT_45min GSE99626.ESR1.MCF-7_estradiol-DHT_45min 147 bp overlap
EWSR1-FLI1 1 dataset
Motif ES_0h ES_0h-EWSR1-FLI1_MA0149.1 18 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 202 bp overlap
GATA6 2 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 308 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 451 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF939VKA 219 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 269 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 196 bp overlap
INSM1 1 dataset
Motif ES_0h ES_0h-INSM1_MA0155.1 12 bp overlap
JUN 5 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 386 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 289 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 317 bp overlap
ChIP HAEC_oxpapc_4h GSE89970.JUN.HAEC_oxpapc_4h 130 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 468 bp overlap
JUND 2 datasets
ChIP H1 ENCFF468JZD 231 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 102 bp overlap
KLF4 4 datasets
ChIP HAP1 GSE130417.KLF4.HAP1 207 bp overlap
ChIP WA09 GSE105028.KLF4.WA09 273 bp overlap
ChIP WA09_heat-shock GSE105028.KLF4.WA09_heat-shock 200 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 147 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 151 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 318 bp overlap
NANOG 12 datasets
ChIP GM23338 ENCFF065NZG 296 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 222 bp overlap
ChIP H1 ENCFF747ZPQ 150 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 569 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 420 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 266 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 569 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 457 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 503 bp overlap
ChIP hESC GSE18292.NANOG.hESC 96 bp overlap
ChIP hESC GSE20650.NANOG.hESC 263 bp overlap
ChIP hESC GSE18292.NANOG.hESC 189 bp overlap
NIPBL 5 datasets
ChIP WA09 GSE105028.NIPBL.WA09 266 bp overlap
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 260 bp overlap
ChIP hESC GSE64758.NIPBL.hESC 263 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 380 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 300 bp overlap
NR3C1 7 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 155 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.NR3C1.LNCaP_1F5_SIFOXA1 128 bp overlap
ChIP U2OS_GLUCC ERP007081.NR3C1.U2OS_GLUCC 157 bp overlap
ChIP U2OS_SHHIC5 GSE65847.NR3C1.U2OS_SHHIC5 263 bp overlap
ChIP U2OS_SHNS GSE65847.NR3C1.U2OS_SHNS 274 bp overlap
ChIP U2OS_siBRMsiHic5 GSE109383.NR3C1.U2OS_siBRMsiHic5 216 bp overlap
ChIP U2OS_siHic5siNS GSE109383.NR3C1.U2OS_siHic5siNS 252 bp overlap
Nr2e3 1 dataset
Motif ES_0h ES_0h-Nr2e3_MA0164.2 6 bp overlap
OSR1 1 dataset
Motif ES_0h ES_0h-OSR1_MA1542.2 8 bp overlap
OSR2 1 dataset
Motif ES_0h ES_0h-OSR2_MA1646.2 8 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 286 bp overlap
POU5F1 15 datasets
ChIP BG03 GSE21614.POU5F1.BG03 164 bp overlap
ChIP GM23338 ENCFF333SNB 282 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 560 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 529 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 569 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 278 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 281 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 359 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 421 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 263 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 569 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 496 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 330 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 302 bp overlap
PRDM9 1 dataset
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
Prdm4 1 dataset
Motif ES_0h ES_0h-Prdm4_MA1647.3 11 bp overlap
RAD21 5 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 355 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 299 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 350 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 182 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 207 bp overlap
RBBP5 2 datasets
ChIP WA01 ENCSR000AQC.RBBP5.WA01 227 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 147 bp overlap
SMAD2 1 dataset
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 231 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 473 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 326 bp overlap
SMAD2_3 3 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 421 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 264 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 347 bp overlap
SMAD3 3 datasets
ChIP BG03 GSE21614.SMAD3.BG03 200 bp overlap
ChIP BG03 GSE36578.SMAD3.BG03 84 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 256 bp overlap
SMARCA4 4 datasets
ChIP WA09 GSE105028.SMARCA4.WA09 336 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 255 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 483 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 313 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 322 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 384 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 309 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 312 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 355 bp overlap
SOX12 1 dataset
Motif ES_0h ES_0h-SOX12_MA1561.2 10 bp overlap
SOX2 6 datasets
ChIP H9 GSE46837.SOX2.H9 229 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 232 bp overlap
ChIP hESC GSE18292.SOX2.hESC 145 bp overlap
ChIP hESC GSE69479.SOX2.hESC 237 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 344 bp overlap
ChIP hiPSC_3s2 GSE81899.SOX2.hiPSC_3s2 376 bp overlap
SP1 3 datasets
Motif ES_0h ES_0h-SP1_MA0079.5 9 bp overlap
ChIP H1 ENCFF263FUH 308 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 311 bp overlap
SP2 1 dataset
Motif ES_0h ES_0h-SP2_MA0516.3 9 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SREBF1 1 dataset
Motif ES_0h ES_0h-SREBF1_MA0595.1 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 250 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 148 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 144 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 307 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 569 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 569 bp overlap
Wt1 1 dataset
Motif ES_0h ES_0h-Wt1_MA1627.2 10 bp overlap
YY1 3 datasets
ChIP K-562 ENCSR000BMH.YY1.K-562 119 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 131 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 143 bp overlap
ZNF114 1 dataset
ChIP GM23338 ENCSR555KFE.ZNF114.GM23338 204 bp overlap
ZNF148 1 dataset
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF24 1 dataset
Motif ES_0h ES_0h-ZNF24_MA1124.1 13 bp overlap
ZNF281 1 dataset
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF331 1 dataset
ChIP GM23338 ENCSR918LRB.ZNF331.GM23338 146 bp overlap
ZNF396 1 dataset
ChIP WTC11 ENCFF776JWJ 275 bp overlap
ZNF398 1 dataset
ChIP BG01V GSE133630.ZNF398.BG01V 199 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 217 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 569 bp overlap
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