chr7 : 55,539,495 55,539,768
273 bp 76 TFs 0 linked genes
This 273 bp open chromatin element has no linked target genes and is bound by 76 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:55,534,495 – 55,544,768
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
76 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 111 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 273 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 243 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 135 bp overlap
BRD4 7 datasets
ChIP CLL_patient1 GSE109411.BRD4.CLL_patient1 273 bp overlap
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 171 bp overlap
ChIP CLL_patient2_4h_CpG GSE109411.BRD4.CLL_patient2_4h_CpG 273 bp overlap
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 273 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 273 bp overlap
ChIP CLL_patient4_4h_CpG GSE109411.BRD4.CLL_patient4_4h_CpG 273 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 273 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 256 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 255 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 273 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 214 bp overlap
CTCF 13 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 217 bp overlap
ChIP H1 ENCFF764RHO 227 bp overlap
ChIP IMR-90 ENCSR000EFI.CTCF.IMR-90 176 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 242 bp overlap
ChIP adrenal-gland ENCSR899JSO.CTCF.adrenal-gland 87 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 186 bp overlap
ChIP fibroblast_SKIN_LEG ENCSR000DPG.CTCF.fibroblast_SKIN_LEG 105 bp overlap
ChIP glioblastoma_GBM3565 GSE139416.CTCF.glioblastoma_GBM3565 179 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 145 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 122 bp overlap
ChIP kidney epithelial cell ENCFF173LWY 222 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 156 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 183 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 273 bp overlap
ESR1 4 datasets
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 189 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 230 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 195 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 191 bp overlap
FEZF1 1 dataset
ChIP HEK293 GSE76494.FEZF1.HEK293 141 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 223 bp overlap
FOSL2 1 dataset
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 211 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 224 bp overlap
HOXB4 1 dataset
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
HOXD3 1 dataset
Motif DE_12h DE_12h-HOXD3_MA0912.2 8 bp overlap
HOXD4 1 dataset
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
IRF7 1 dataset
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 269 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 233 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 273 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 273 bp overlap
MAX 3 datasets
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 144 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 273 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 273 bp overlap
MAZ 2 datasets
ChIP IMR-90 ENCFF682IKN 273 bp overlap
ChIP IMR-90 ENCSR000EFF.MAZ.IMR-90 120 bp overlap
MED1 1 dataset
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 187 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 150 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 196 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 273 bp overlap
MXI1 2 datasets
ChIP IMR-90 ENCFF040YVH 228 bp overlap
ChIP IMR-90 ENCSR000EFE.MXI1.IMR-90 203 bp overlap
MYBL2 2 datasets
ChIP A-673 GSE119971.MYBL2.A-673 273 bp overlap
Motif DE_12h DE_12h-MYBL2_MA0777.1 15 bp overlap
MYC 4 datasets
ChIP H1 ENCFF794ZJT 248 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 273 bp overlap
ChIP P493-6_Dpy30-shRNA GSE101853.MYC.P493-6_Dpy30-shRNA 161 bp overlap
ChIP WA01 ENCSR000EBY.MYC.WA01 140 bp overlap
MYCN 1 dataset
ChIP CHP-134 GSE129588.MYCN.CHP-134 258 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 273 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 213 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 273 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 273 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 235 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 273 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 273 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 273 bp overlap
ChIP hESC GSE18292.NANOG.hESC 153 bp overlap
ChIP hESC GSE20650.NANOG.hESC 230 bp overlap
NBN 1 dataset
ChIP GM12878 ENCSR278SQL.NBN.GM12878 107 bp overlap
NIPBL 3 datasets
ChIP hESC GSE64758.NIPBL.hESC 188 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 224 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 194 bp overlap
NR3C1 1 dataset
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 102 bp overlap
PAX5 1 dataset
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 181 bp overlap
PAX8 1 dataset
ChIP OVSAHO GSE79893.PAX8.OVSAHO 60 bp overlap
PBX3 1 dataset
ChIP GM12878 ENCSR000BGR.PBX3.GM12878 54 bp overlap
POLR2A 2 datasets
ChIP GM12878 ENCFF521FXC 273 bp overlap
ChIP GM12891 ENCFF012SUT 273 bp overlap
POU5F1 4 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 273 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 246 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 273 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 222 bp overlap
POU6F1 1 dataset
Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap
POU6F2 1 dataset
Motif DE_12h DE_12h-POU6F2_MA0793.2 9 bp overlap
Prdm4 1 dataset
Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap
RAD21 2 datasets
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 140 bp overlap
ChIP THP-1_PMA_IFNb-6h GSE103477.RAD21.THP-1_PMA_IFNb-6h 217 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 254 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 273 bp overlap
RELA 1 dataset
ChIP IMR-90_TNF GSE43070.RELA.IMR-90_TNF 82 bp overlap
RFX5 1 dataset
ChIP IMR-90 ENCSR000EFD.RFX5.IMR-90 122 bp overlap
Rhox11 1 dataset
Motif DE_12h DE_12h-Rhox11_MA0629.2 9 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 159 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 250 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 155 bp overlap
SMARCA2 3 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 273 bp overlap
ChIP NPC_R1159Q GSE122631.SMARCA2.NPC_R1159Q 233 bp overlap
ChIP NPC_R1159Q_ab GSE122631.SMARCA2.NPC_R1159Q_ab 213 bp overlap
SMARCA4 3 datasets
ChIP HeLa GSE137250.SMARCA4.HeLa 219 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 73 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 268 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 205 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 270 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 261 bp overlap
STAT1 2 datasets
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 140 bp overlap
ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 134 bp overlap
STAT3 1 dataset
ChIP SU-DHL-2 GSE50723.STAT3.SU-DHL-2 101 bp overlap
Sox6 1 dataset
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 273 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 240 bp overlap
TBP 1 dataset
ChIP K-562 GSE55306.TBP.K-562 122 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 273 bp overlap
TEAD4 1 dataset
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 149 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 210 bp overlap
THRB 1 dataset
Motif DE_12h DE_12h-THRB_MA1576.2 18 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 166 bp overlap
USF2 1 dataset
ChIP IMR-90 ENCSR513UQG.USF2.IMR-90 129 bp overlap
ZBTB18 1 dataset
Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 157 bp overlap
ZIC2 2 datasets
ChIP BCBL-1_latent GSE102462.ZIC2.BCBL-1_latent 187 bp overlap
ChIP HEK293 ENCFF033NQQ 250 bp overlap
ZIC5 3 datasets
ChIP HCT-116_WT-CT289 GSE127960.ZIC5.HCT-116_WT-CT289 273 bp overlap
ChIP HCT-116_sc1 GSE127960.ZIC5.HCT-116_sc1 254 bp overlap
ChIP HCT-116_sc2 GSE127960.ZIC5.HCT-116_sc2 165 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 229 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 272 bp overlap
ZNF667 1 dataset
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap