chr7 : 48,454,936 – 48,455,117
181 bp 76 TFs 1 linked gene
This 181 bp open chromatin element is linked to ABCA13 and is bound by 76 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ABCA13 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:48,449,936 – 48,460,117
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
76 transcription factors
Source
Cell type
AR 2 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 177 bp overlap
ChIP VCaP_DHT GSE79128.AR.VCaP_DHT 181 bp overlap
BRD4 4 datasets
ChIP 22Rv1_DHT-ABBV-744 GSE118247.BRD4.22Rv1_DHT-ABBV-744 177 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 181 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 158 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 181 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 181 bp overlap
CCNT2 1 dataset
ChIP K-562 ENCSR000DOA.CCNT2.K-562 67 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 181 bp overlap
CHD8 3 datasets
ChIP T-47D GSE62428.CHD8.T-47D 181 bp overlap
ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 120 bp overlap
ChIP T-47D_ETOH_5 GSE62428.CHD8.T-47D_ETOH_5 152 bp overlap
CREB1 1 dataset
ChIP MDA-MB-134-VI GSE109103.CREB1.MDA-MB-134-VI 104 bp overlap
CREM 1 dataset
ChIP K-562 ENCSR077DKV.CREM.K-562 106 bp overlap
CRY1 1 dataset
ChIP U2OS GSE44236.CRY1.U2OS 181 bp overlap
CTCF 62 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 181 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 181 bp overlap
ChIP A-549 ENCSR000DNA.CTCF.A-549 135 bp overlap
ChIP C4-2B ENCFF821XVN 181 bp overlap
ChIP C4-2B ENCFF821XVN 181 bp overlap
ChIP DU145 GSE121021.CTCF.DU145 181 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 136 bp overlap
ChIP GM23338 ENCFF772DML 168 bp overlap
ChIP GSC23 GSE139416.CTCF.GSC23 181 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 181 bp overlap
ChIP H1 ENCFF764RHO 181 bp overlap
ChIP H9 ENCFF152GTF 174 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 154 bp overlap
ChIP HepG2 ENCFF348BUL 170 bp overlap
ChIP HepG2 ENCFF757EKU 181 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 181 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 165 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 137 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.CTCF.K-562_dCas9-LSD1 153 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 181 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 181 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 158 bp overlap
ChIP Kelly_shB4-res GSE115248.CTCF.Kelly_shB4-res 158 bp overlap
ChIP LNCaP ENCSR000DMF.CTCF.LNCaP 138 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 177 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 177 bp overlap
ChIP MCF-7 ENCFF424NQR 181 bp overlap
ChIP MCF-7 ENCFF844STM 181 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 181 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 181 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 96 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 181 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 181 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 181 bp overlap
ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 181 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 181 bp overlap
ChIP T-47D_triptolide GSE111923.CTCF.T-47D_triptolide 181 bp overlap
ChIP U-937 ERP008568.CTCF.U-937 67 bp overlap
ChIP U2OS_interphase GSE141081.CTCF.U2OS_interphase 177 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 133 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 142 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 139 bp overlap
ChIP delta-47 GSE70764.CTCF.delta-47 181 bp overlap
ChIP endodermal cell ENCFF471YCZ 181 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 181 bp overlap
ChIP epithelial_esophagus ENCSR000DTR.CTCF.epithelial_esophagus 113 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 178 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 181 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 181 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 155 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 173 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 181 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 181 bp overlap
ChIP hiPSC_IIIB12 GSE106870.CTCF.hiPSC_IIIB12 130 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 181 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 181 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 175 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 179 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 117 bp overlap
ChIP pancreas ENCSR000DND.CTCF.pancreas 94 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 148 bp overlap
CTCFL 7 datasets
ChIP K-562 GSE70764.CTCFL.K-562 181 bp overlap
ChIP K-562 ENCSR000BNK.CTCFL.K-562 158 bp overlap
ChIP K562 ENCFF883NXC 150 bp overlap
ChIP Kelly_resistant GSE103030.CTCFL.Kelly_resistant 181 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCFL.Kelly_resistant_JQ1 181 bp overlap
ChIP Kelly_shLUC-res GSE115248.CTCFL.Kelly_shLUC-res 181 bp overlap
ChIP delta-47 GSE70764.CTCFL.delta-47 181 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 181 bp overlap
ChIP BLaER1 ENCFF274GAT 181 bp overlap
DNMT1 1 dataset
ChIP HepG2 ENCFF153HEB 181 bp overlap
E2F1 1 dataset
ChIP LNCaP_shRB GSE94958.E2F1.LNCaP_shRB 181 bp overlap
E2F6 3 datasets
ChIP K-562 ENCSR000EWJ.E2F6.K-562 181 bp overlap
ChIP K-562 ENCSR000BLI.E2F6.K-562 170 bp overlap
ChIP K562 ENCFF136LTS 181 bp overlap
ERG 2 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 181 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 97 bp overlap
ESR1 5 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 181 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 181 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 181 bp overlap
ChIP MCF-7_SHCTR_E2_TNF GSE59530.ESR1.MCF-7_SHCTR_E2_TNF 66 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 181 bp overlap
ETV4 1 dataset
ChIP T-47D GSE129803.ETV4.T-47D 115 bp overlap
EZH2 5 datasets
ChIP LNCaP GSE39459.EZH2.LNCaP 181 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 181 bp overlap
ChIP prostate-cancer_HA GSE107780.EZH2.prostate-cancer_HA 181 bp overlap
ChIP prostate-cancer_plko GSE107780.EZH2.prostate-cancer_plko 181 bp overlap
ChIP prostate-cancer_shEZH2 GSE107780.EZH2.prostate-cancer_shEZH2 177 bp overlap
FLI1 3 datasets
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 181 bp overlap
ChIP UAE GSE23730.FLI1.UAE 141 bp overlap
ChIP UAE_ZINC GSE23730.FLI1.UAE_ZINC 102 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 181 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 181 bp overlap
FOXP2 1 dataset
ChIP PFSK1 ENCSR000BGA.FOXP2.PFSK1 126 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 181 bp overlap
GMEB1 1 dataset
ChIP K-562 ENCSR928KOR.GMEB1.K-562 181 bp overlap
GSPT2 1 dataset
ChIP HEK293T GSE35197.GSPT2.HEK293T 181 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 174 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR000AQF.HDAC1.K-562 55 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR000AQG.HDAC2.K-562 109 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 181 bp overlap
HIF1A 1 dataset
ChIP 501-mel GSE95280.HIF1A.501-mel 181 bp overlap
HMGN3 1 dataset
ChIP K-562 ENCSR000DOB.HMGN3.K-562 120 bp overlap
JUNB 1 dataset
ChIP Karpas-299 GSE151413.JUNB.Karpas-299 181 bp overlap
KDM5B 5 datasets
ChIP K-562 ENCSR000AQA.KDM5B.K-562 71 bp overlap
ChIP K562 ENCFF049WWX 181 bp overlap
ChIP MCF-7 GSE46055.KDM5B.MCF-7 77 bp overlap
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 104 bp overlap
ChIP T-47D GSE46055.KDM5B.T-47D 165 bp overlap
L3MBTL2 1 dataset
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 181 bp overlap
MAX 3 datasets
ChIP K-562 ENCSR000EFV.MAX.K-562 110 bp overlap
ChIP K562 ENCFF398VJM 175 bp overlap
ChIP K562 ENCFF398VJM 181 bp overlap
MGA 2 datasets
ChIP K-562 ENCSR710WLO.MGA.K-562 181 bp overlap
ChIP K562 ENCFF140CEX 181 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 181 bp overlap
MYC 3 datasets
ChIP U2OS_Doxy GSE77356.MYC.U2OS_Doxy 93 bp overlap
ChIP U2OS_Doxy GSE77328.MYC.U2OS_Doxy 84 bp overlap
ChIP U2OS_SHRCTR GSE77356.MYC.U2OS_SHRCTR 95 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 173 bp overlap
NELFE 1 dataset
ChIP K-562_HS GSE112379.NELFE.K-562_HS 154 bp overlap
NR2C2 2 datasets
ChIP K562 ENCFF750AXF 181 bp overlap
ChIP K562 ENCFF750AXF 181 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BJR.NR3C1.A-549 181 bp overlap
NR4A1 1 dataset
ChIP K-562 ENCSR130PDE.NR4A1.K-562 181 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 181 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 181 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 181 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 181 bp overlap
PHF8 2 datasets
ChIP K-562 ENCSR000AQH.PHF8.K-562 90 bp overlap
ChIP K562 ENCFF217UCA 94 bp overlap
POLR2G 1 dataset
ChIP K562 ENCFF047BLG 88 bp overlap
POU2F1 2 datasets
ChIP T-47D GSE148277.POU2F1.T-47D 181 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 173 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 181 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 159 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 181 bp overlap
RAD21 15 datasets
ChIP H1 ENCFF698EWO 181 bp overlap
ChIP H1 ENCFF967OJF 171 bp overlap
ChIP HeLa-Tet-On GSE112028.RAD21.HeLa-Tet-On 172 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 124 bp overlap
ChIP K562 ENCFF066JWO 181 bp overlap
ChIP K562 ENCFF634XYR 131 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 181 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 181 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 166 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 153 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 138 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 114 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 163 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 179 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 175 bp overlap
RB1 1 dataset
ChIP K-562 ENCSR670JDQ.RB1.K-562 126 bp overlap
RBBP5 1 dataset
ChIP K-562 ENCSR000AQI.RBBP5.K-562 139 bp overlap
RBFOX2 2 datasets
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 149 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 141 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 181 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 181 bp overlap
RUNX1 1 dataset
ChIP AML GSE111821.RUNX1.AML 181 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 181 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 181 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 181 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 181 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 181 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 181 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 181 bp overlap
SUZ12 1 dataset
ChIP LNCaP GSE39459.SUZ12.LNCaP 126 bp overlap
TAF1 1 dataset
ChIP K-562 ENCSR000BKS.TAF1.K-562 125 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 158 bp overlap
TP53 2 datasets
ChIP Calu-1_MUT8-COMB GSE128673.TP53.Calu-1_MUT8-COMB 54 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 121 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 177 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 81 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 181 bp overlap
ZBTB17 1 dataset
ChIP K562 ENCFF731UTU 181 bp overlap
ZBTB33 1 dataset
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 181 bp overlap
ZBTB48 2 datasets
ChIP U2OS GSE96776.ZBTB48.U2OS 181 bp overlap
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 181 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 181 bp overlap
ZFP57 1 dataset
ChIP hESC GSE115387.ZFP57.hESC 181 bp overlap
ZNF263 1 dataset
ChIP K-562 ENCSR000EWN.ZNF263.K-562 115 bp overlap
ZNF282 1 dataset
ChIP K562 ENCFF536GER 181 bp overlap
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