chr7 : 45,051,984 45,052,624
640 bp 90 TFs 7 linked genes
This 640 bp open chromatin element is linked to 7 target genes and is bound by 90 transcription factors.
Linked Genes
7 genes
Link type
Gene Expression Dist. to TSS Distance Link type
CCM2 52.0 kb Distal Multiome
TBRG4 59.4 kb Distal Multiome
SNHG15 65.6 kb Distal Multiome+HiCAR
PURB 166.8 kb Distal Multiome
H2AZ2 204.3 kb Distal Multiome
PPIA 255.6 kb Distal Multiome
ZMIZ2 303.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:45,046,984 – 45,057,624
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
90 transcription factors
Source
Cell type
AR 1 dataset
ChIP DU145_ARQ6540X GSE47987.AR.DU145_ARQ6540X 187 bp overlap
ARNTL 1 dataset
ChIP U2OS_trough_DMOG GSE85096.ARNTL.U2OS_trough_DMOG 240 bp overlap
ASCL1 1 dataset
ChIP SCLC_ASCLP_NE GSE61197.ASCL1.SCLC_ASCLP_NE 156 bp overlap
BHLHE22 3 datasets
Motif DE_36h DE_36h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_36h DE_36h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_60h DE_60h-BHLHE22_MA1635.2 6 bp overlap
BRD4 2 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 251 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 334 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_Trametinib GSE126143.CASZ1.rhabdomyosarcoma_Trametinib 335 bp overlap
CDKN1B 1 dataset
ChIP MDA-BoM-1833_shp27 GSE112444.CDKN1B.MDA-BoM-1833_shp27 256 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 585 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 251 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 484 bp overlap
ChIP BLaER1 ENCFF274GAT 509 bp overlap
EBF1 1 dataset
ChIP NALM-6 GSE126300.EBF1.NALM-6 217 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 257 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 222 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 274 bp overlap
ChIP DE DE-FOXA2-2 387 bp overlap
FOXD3 2 datasets
Motif DE_36h DE_36h-FOXD3_MA0041.3 14 bp overlap
Motif DE_60h DE_60h-FOXD3_MA0041.3 14 bp overlap
FOXF1 1 dataset
ChIP GIST-T1 GSE106624.FOXF1.GIST-T1 167 bp overlap
FOXH1 3 datasets
Motif DE_36h DE_36h-FOXH1_MA0479.2 8 bp overlap
Motif DE_36h DE_36h-FOXH1_MA0479.2 8 bp overlap
Motif DE_60h DE_60h-FOXH1_MA0479.2 8 bp overlap
FOXP1 1 dataset
ChIP SU-DHL-6 ERP010999.FOXP1.SU-DHL-6 147 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 448 bp overlap
ChIP DE DE-GATA4-2 523 bp overlap
Motif DE_24h DE_24h-GATA4_MA0482.3 8 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
GATA5 4 datasets
Motif DE_24h DE_24h-GATA5_MA0766.3 8 bp overlap
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 511 bp overlap
ChIP DE DE-GATA6-2 563 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 613 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 601 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 597 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 470 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 625 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 637 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 540 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 269 bp overlap
GRHL2 2 datasets
Motif DE_36h DE_36h-GRHL2_MA1105.3 8 bp overlap
Motif DE_60h DE_60h-GRHL2_MA1105.3 8 bp overlap
Gli1 2 datasets
Motif DE_36h DE_36h-Gli1_MA1990.2 10 bp overlap
Motif DE_60h DE_60h-Gli1_MA1990.2 10 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 313 bp overlap
HIF1A 1 dataset
ChIP U2OS_DMOG GSE85096.HIF1A.U2OS_DMOG 243 bp overlap
Hnf1A 2 datasets
Motif DE_36h DE_36h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_60h DE_60h-Hnf1A_MA1991.2 10 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 339 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 461 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 516 bp overlap
Lef1 2 datasets
Motif DE_36h DE_36h-Lef1_MA0768.3 8 bp overlap
Motif DE_60h DE_60h-Lef1_MA0768.3 8 bp overlap
MAX 3 datasets
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 273 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 623 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 223 bp overlap
MAZ 3 datasets
Motif DE_24h DE_24h-MAZ_MA1522.2 8 bp overlap
Motif DE_36h DE_36h-MAZ_MA1522.2 8 bp overlap
Motif DE_60h DE_60h-MAZ_MA1522.2 8 bp overlap
MEIS1 2 datasets
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 515 bp overlap
MYB 2 datasets
Motif DE_36h DE_36h-MYB_MA0100.4 6 bp overlap
Motif DE_60h DE_60h-MYB_MA0100.4 6 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 155 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 180 bp overlap
MYOD1 4 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 251 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 526 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 207 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 578 bp overlap
Mecom 2 datasets
Motif DE_36h DE_36h-Mecom_MA0029.2 11 bp overlap
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
Msgn1 2 datasets
Motif DE_36h DE_36h-Msgn1_MA1524.3 10 bp overlap
Motif DE_60h DE_60h-Msgn1_MA1524.3 10 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 189 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 174 bp overlap
NEUROG2 4 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 542 bp overlap
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 464 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 606 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 231 bp overlap
NHLH1 1 dataset
Motif DE_36h DE_36h-NHLH1_MA0048.3 9 bp overlap
NR3C1 4 datasets
ChIP ALL_DEX GSE109946.NR3C1.ALL_DEX 307 bp overlap
ChIP ALL_DEX GSE109946.NR3C1.ALL_DEX 169 bp overlap
ChIP NALM-6 GSE67046.NR3C1.NALM-6 194 bp overlap
ChIP NALM-6 GSE67046.NR3C1.NALM-6 238 bp overlap
Neurod2 3 datasets
Motif DE_36h DE_36h-Neurod2_MA1993.2 6 bp overlap
Motif DE_36h DE_36h-Neurod2_MA1993.2 6 bp overlap
Motif DE_60h DE_60h-Neurod2_MA1993.2 6 bp overlap
Olig2 3 datasets
Motif DE_36h DE_36h-Olig2_MA1997.2 6 bp overlap
Motif DE_36h DE_36h-Olig2_MA1997.2 6 bp overlap
Motif DE_60h DE_60h-Olig2_MA1997.2 6 bp overlap
PAX5 1 dataset
ChIP NALM-6 GSE126300.PAX5.NALM-6 230 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 640 bp overlap
POLR2A 1 dataset
ChIP spleen ENCFF044PYR 437 bp overlap
POU2F2 1 dataset
ChIP HNPC_UNDIF GSE74814.POU2F2.HNPC_UNDIF 119 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 299 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 484 bp overlap
PROX1 4 datasets
Motif DE_24h DE_24h-PROX1_MA0794.1 12 bp overlap
Motif DE_36h DE_36h-PROX1_MA0794.1 12 bp overlap
Motif DE_60h DE_60h-PROX1_MA0794.1 12 bp overlap
Motif DE_72h DE_72h-PROX1_MA0794.1 12 bp overlap
Ptf1A 1 dataset
Motif DE_36h DE_36h-Ptf1A_MA1619.2 8 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 242 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 615 bp overlap
RUNX1 1 dataset
ChIP NALM-6 GSE126300.RUNX1.NALM-6 339 bp overlap
SMAD1 1 dataset
ChIP K-562 ENCSR038DJJ.SMAD1.K-562 218 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 274 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 633 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 640 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 640 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 622 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 640 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 640 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 576 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 583 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 191 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 249 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 276 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S10-DE-d1-BAF155-exp1 287 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 464 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 204 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 395 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 640 bp overlap
TCF4 1 dataset
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 178 bp overlap
TCF7 2 datasets
Motif DE_36h DE_36h-TCF7_MA0769.3 7 bp overlap
Motif DE_60h DE_60h-TCF7_MA0769.3 7 bp overlap
TCF7L1 2 datasets
Motif DE_36h DE_36h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_60h DE_60h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 2 datasets
Motif DE_36h DE_36h-TCF7L2_MA0523.2 9 bp overlap
Motif DE_60h DE_60h-TCF7L2_MA0523.2 9 bp overlap
TFAP4 1 dataset
Motif DE_36h DE_36h-TFAP4_MA0691.1 10 bp overlap
TFAP4::FLI1 2 datasets
Motif DE_36h DE_36h-TFAP4FLI1_MA1967.2 14 bp overlap
Motif DE_60h DE_60h-TFAP4FLI1_MA1967.2 14 bp overlap
TFCP2 2 datasets
Motif DE_36h DE_36h-TFCP2_MA1968.2 9 bp overlap
Motif DE_60h DE_60h-TFCP2_MA1968.2 9 bp overlap
TFDP1 1 dataset
ChIP K-562 ENCSR224IKA.TFDP1.K-562 150 bp overlap
TGIF2LX 1 dataset
Motif DE_36h DE_36h-TGIF2LX_MA1571.1 12 bp overlap
TGIF2LY 1 dataset
Motif DE_36h DE_36h-TGIF2LY_MA1572.1 12 bp overlap
Tcf12 3 datasets
Motif DE_36h DE_36h-Tcf12_MA0521.3 6 bp overlap
Motif DE_36h DE_36h-Tcf12_MA0521.3 6 bp overlap
Motif DE_60h DE_60h-Tcf12_MA0521.3 6 bp overlap
Twist2 3 datasets
Motif DE_36h DE_36h-Twist2_MA0633.3 6 bp overlap
Motif DE_36h DE_36h-Twist2_MA0633.3 6 bp overlap
Motif DE_60h DE_60h-Twist2_MA0633.3 6 bp overlap
ZNF157 4 datasets
Motif DE_24h DE_24h-ZNF157_MA2331.1 21 bp overlap
Motif DE_36h DE_36h-ZNF157_MA2331.1 21 bp overlap
Motif DE_60h DE_60h-ZNF157_MA2331.1 21 bp overlap
Motif DE_72h DE_72h-ZNF157_MA2331.1 21 bp overlap
ZNF19 1 dataset
ChIP HEK293T GSE78099.ZNF19.HEK293T 294 bp overlap
ZNF282 1 dataset
Motif DE_36h DE_36h-ZNF282_MA1154.2 15 bp overlap
ZNF317 1 dataset
Motif DE_36h DE_36h-ZNF317_MA1593.2 8 bp overlap
ZNF343 3 datasets
Motif DE_24h DE_24h-ZNF343_MA1711.2 16 bp overlap
Motif DE_36h DE_36h-ZNF343_MA1711.2 16 bp overlap
Motif DE_60h DE_60h-ZNF343_MA1711.2 16 bp overlap
ZNF449 4 datasets
Motif DE_36h DE_36h-ZNF449_MA1656.2 10 bp overlap
Motif DE_60h DE_60h-ZNF449_MA1656.2 10 bp overlap
ChIP HEK293 ENCFF764ZIC 411 bp overlap
ChIP HEK293 ENCSR738SLS.ZNF449.HEK293 249 bp overlap
ZNF558 2 datasets
Motif DE_36h DE_36h-ZNF558_MA2335.1 29 bp overlap
Motif DE_60h DE_60h-ZNF558_MA2335.1 29 bp overlap
ZNF669 4 datasets
Motif DE_24h DE_24h-ZNF669_MA1985.1 15 bp overlap
Motif DE_36h DE_36h-ZNF669_MA1985.1 15 bp overlap
Motif DE_60h DE_60h-ZNF669_MA1985.1 15 bp overlap
Motif DE_72h DE_72h-ZNF669_MA1985.1 15 bp overlap
ZNF684 2 datasets
Motif DE_36h DE_36h-ZNF684_MA1600.2 14 bp overlap
Motif DE_60h DE_60h-ZNF684_MA1600.2 14 bp overlap
ZNF707 2 datasets
Motif DE_36h DE_36h-ZNF707_MA1715.1 15 bp overlap
Motif DE_60h DE_60h-ZNF707_MA1715.1 15 bp overlap
Zic1::Zic2 4 datasets
Motif DE_24h DE_24h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_60h DE_60h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_72h DE_72h-Zic1Zic2_MA1628.2 7 bp overlap
Zic3 4 datasets
Motif DE_24h DE_24h-Zic3_MA0697.3 7 bp overlap
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap
Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap
Motif DE_72h DE_72h-Zic3_MA0697.3 7 bp overlap