chr7 : 21,965,322 – 21,966,224
902 bp 87 TFs 1 linked gene
This 902 bp open chromatin element is linked to CDCA7L and is bound by 87 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CDCA7L 19.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:21,960,322 – 21,971,224
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
87 transcription factors
Source
Cell type
ARID3A 2 datasets
ChIP GM12878 ENCFF006WWZ 137 bp overlap
ChIP GM12878 ENCSR778UBR.ARID3A.GM12878 84 bp overlap
ATF7 2 datasets
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 254 bp overlap
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 256 bp overlap
BCL6 3 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCL6.B-cell_GERMINAL_CENTER 152 bp overlap
ChIP B-cell_GERMINAL_CENTER GSE68349.BCL6.B-cell_GERMINAL_CENTER 115 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 232 bp overlap
BCOR 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 206 bp overlap
BRD2 1 dataset
ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 145 bp overlap
BRD4 4 datasets
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 235 bp overlap
ChIP MV4-11-B_BI00894999_35nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_35nM_4h 200 bp overlap
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 208 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 233 bp overlap
CDK8 1 dataset
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 306 bp overlap
CEBPA 9 datasets
ChIP Kasumi-1_CEBPA-ER GSE102697.CEBPA.Kasumi-1_CEBPA-ER 124 bp overlap
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 274 bp overlap
ChIP THP-1_1-25D_24h GSE124032.CEBPA.THP-1_1-25D_24h 272 bp overlap
ChIP THP-1_1-25D_2h GSE124032.CEBPA.THP-1_1-25D_2h 221 bp overlap
ChIP THP-1_1-25D_8h GSE124032.CEBPA.THP-1_1-25D_8h 288 bp overlap
ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 276 bp overlap
ChIP THP-1_EtOH_2h GSE124032.CEBPA.THP-1_EtOH_2h 322 bp overlap
ChIP THP-1_EtOH_8h GSE124032.CEBPA.THP-1_EtOH_8h 227 bp overlap
ChIP U-937 ERP008568.CEBPA.U-937 216 bp overlap
CEBPB 1 dataset
ChIP MV4-11 GSE88746.CEBPB.MV4-11 204 bp overlap
CREBBP 1 dataset
ChIP tonsil_GCBc_p4 GSE89688.CREBBP.tonsil_GCBc_p4 547 bp overlap
Crx 1 dataset
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 206 bp overlap
DPRX 2 datasets
Motif DE_48h DE_48h-DPRX_MA1480.2 9 bp overlap
Motif DE_60h DE_60h-DPRX_MA1480.2 9 bp overlap
EHF 1 dataset
Motif DE_48h DE_48h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif DE_48h DE_48h-ELF1_MA0473.4 9 bp overlap
ELF3 1 dataset
Motif DE_48h DE_48h-ELF3_MA0640.3 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 279 bp overlap
EP300 2 datasets
ChIP AML GSE131939.EP300.AML 93 bp overlap
ChIP sigmoid colon ENCFF524QSR 271 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 257 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 359 bp overlap
ETV1 2 datasets
Motif DE_48h DE_48h-ETV1_MA0761.3 9 bp overlap
ChIP GIST-T1 GSE106624.ETV1.GIST-T1 326 bp overlap
ETV2::FOXI1 1 dataset
Motif DE_48h DE_48h-ETV2FOXI1_MA1942.2 11 bp overlap
ETV7 1 dataset
Motif DE_48h DE_48h-ETV7_MA1708.2 9 bp overlap
EZH2 2 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 485 bp overlap
ChIP peripheral-blood-mononuclear-cell_mut GSE115772.EZH2.peripheral-blood-mononuclear-cell_mut 75 bp overlap
Elf5 1 dataset
Motif DE_48h DE_48h-Elf5_MA0136.4 8 bp overlap
Erg 1 dataset
Motif DE_48h DE_48h-Erg_MA0474.4 10 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 625 bp overlap
ChIP DE DE-FOXA2-2 457 bp overlap
GABPA 1 dataset
Motif DE_48h DE_48h-GABPA_MA0062.4 10 bp overlap
GATA2 6 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 221 bp overlap
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
ChIP SKH1 GSE87283.GATA2.SKH1 368 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.GATA2.SKH1_RUNX1-EVI1_KD 370 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 130 bp overlap
GATA4 7 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 175 bp overlap
ChIP DE DE-GATA4-1 637 bp overlap
ChIP DE DE-GATA4-2 838 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 297 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 424 bp overlap
GATA5 2 datasets
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 14 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 162 bp overlap
ChIP DE DE-GATA6-1 572 bp overlap
ChIP DE DE-GATA6-2 859 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 417 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 450 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 474 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 633 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 607 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 662 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 467 bp overlap
ChIP foregut GSE117136.GATA6.foregut 296 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 265 bp overlap
GSC 1 dataset
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
Gata3 2 datasets
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
IKZF2 1 dataset
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
IRF4 1 dataset
ChIP B-cell GSE142493.IRF4.B-cell 189 bp overlap
Ikzf3 1 dataset
Motif DE_48h DE_48h-Ikzf3_MA1992.2 9 bp overlap
JMJD1C 2 datasets
ChIP HL-60 GSE63484.JMJD1C.HL-60 227 bp overlap
ChIP THP-1 GSE63484.JMJD1C.THP-1 156 bp overlap
KMT2A 1 dataset
ChIP MOLM-13_VTP-d3-180110 GSE127507.KMT2A.MOLM-13_VTP-d3-180110 266 bp overlap
KMT2B 2 datasets
ChIP AML GSE112074.KMT2B.AML 317 bp overlap
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 381 bp overlap
MEF2A 2 datasets
Motif DE_48h DE_48h-MEF2A_MA0052.5 10 bp overlap
Motif DE_60h DE_60h-MEF2A_MA0052.5 10 bp overlap
MEF2B 4 datasets
ChIP DLBCL GSE110682.MEF2B.DLBCL 352 bp overlap
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 104 bp overlap
ChIP tonsil GSE110682.MEF2B.tonsil 561 bp overlap
ChIP tonsil GSE110682.MEF2B.tonsil 121 bp overlap
MEF2C 2 datasets
Motif DE_48h DE_48h-MEF2C_MA0497.2 11 bp overlap
Motif DE_60h DE_60h-MEF2C_MA0497.2 11 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCFF615CWQ 89 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 202 bp overlap
MTA3 1 dataset
ChIP GM12878 ENCFF681QPL 59 bp overlap
MYB 3 datasets
ChIP Loucy GSE94000.MYB.Loucy 440 bp overlap
ChIP THP-1 GSE90769.MYB.THP-1 157 bp overlap
ChIP THP-1_OG86 GSE90769.MYB.THP-1_OG86 178 bp overlap
Mecom 2 datasets
Motif DE_48h DE_48h-Mecom_MA0029.2 11 bp overlap
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
NBN 1 dataset
ChIP GM12878 ENCSR278SQL.NBN.GM12878 77 bp overlap
NFATC3 1 dataset
ChIP GM12878 ENCFF340KVJ 84 bp overlap
NR2F2 1 dataset
ChIP liver ENCSR338MMB.NR2F2.liver 159 bp overlap
Nr1h3::Rxra 2 datasets
Motif DE_48h DE_48h-Nr1h3Rxra_MA0494.2 16 bp overlap
Motif DE_60h DE_60h-Nr1h3Rxra_MA0494.2 16 bp overlap
OTX1 1 dataset
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
PHOX2A 2 datasets
Motif DE_48h DE_48h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 2 datasets
Motif DE_48h DE_48h-PHOX2B_MA0681.3 12 bp overlap
Motif DE_60h DE_60h-PHOX2B_MA0681.3 12 bp overlap
PITX1 1 dataset
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_48h DE_48h-PITX2_MA1547.2 8 bp overlap
PITX3 2 datasets
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 325 bp overlap
PKNOX1 1 dataset
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 180 bp overlap
POLR2A 5 datasets
ChIP sigmoid colon ENCFF101ILL 321 bp overlap
ChIP sigmoid colon ENCFF725QFT 324 bp overlap
ChIP sigmoid colon ENCFF748YVT 152 bp overlap
ChIP sigmoid colon ENCFF754JQR 316 bp overlap
ChIP stomach ENCFF278MYS 241 bp overlap
PPARG 2 datasets
Motif DE_48h DE_48h-PPARG_MA0066.2 19 bp overlap
Motif DE_60h DE_60h-PPARG_MA0066.2 19 bp overlap
PROP1 2 datasets
Motif DE_48h DE_48h-PROP1_MA0715.1 11 bp overlap
Motif DE_60h DE_60h-PROP1_MA0715.1 11 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 184 bp overlap
RAD21 2 datasets
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.RAD21.THP-1_Pam3csk-150m-Flavo-030m 201 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.RAD21.THP-1_Pam3csk-180m-Flavo-060m 269 bp overlap
RELA 1 dataset
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 149 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 445 bp overlap
RHOXF1 1 dataset
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 163 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 401 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 410 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 431 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 587 bp overlap
SPI1 26 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 395 bp overlap
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 239 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 191 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 258 bp overlap
ChIP DC_LPS GSE123347.SPI1.DC_LPS 147 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 355 bp overlap
ChIP GM12878 ENCFF134LCP 297 bp overlap
ChIP GM12891 ENCFF563IUT 241 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 180 bp overlap
ChIP HL-60 ENCFF645GBT 271 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 112 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 151 bp overlap
ChIP KG-1 GSE128834.SPI1.KG-1 179 bp overlap
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 363 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 285 bp overlap
ChIP ME-1 GSE46044.SPI1.ME-1 258 bp overlap
ChIP NB4 GSE128834.SPI1.NB4 388 bp overlap
ChIP OCI-Ly7 GSE69558.SPI1.OCI-Ly7 175 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 166 bp overlap
ChIP THP-1_DIFF GSE25426.SPI1.THP-1_DIFF 182 bp overlap
ChIP U-937 GSE128834.SPI1.U-937 494 bp overlap
ChIP dendrite GSE58864.SPI1.dendrite 314 bp overlap
ChIP monocyte GSE31621.SPI1.monocyte 144 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.SPI1.monocyte_MACROPHAGE 126 bp overlap
ChIP primary-neutrophil_donorE GSE128834.SPI1.primary-neutrophil_donorE 166 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 316 bp overlap
SPIB 3 datasets
Motif DE_48h DE_48h-SPIB_MA0081.3 13 bp overlap
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 389 bp overlap
ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 509 bp overlap
STAT3 2 datasets
ChIP OCI-Ly7 GSE50723.STAT3.OCI-Ly7 165 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 225 bp overlap
Spi1 1 dataset
Motif DE_48h DE_48h-Spi1_MA0080.7 13 bp overlap
Stat2 1 dataset
Motif DE_48h DE_48h-Stat2_MA1623.2 10 bp overlap
Stat4 1 dataset
Motif DE_48h DE_48h-Stat4_MA0518.2 10 bp overlap
TARDBP 1 dataset
ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 282 bp overlap
TERF2 1 dataset
ChIP LCL GSE55053.TERF2.LCL 134 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 160 bp overlap
THRB 2 datasets
Motif DE_48h DE_48h-THRB_MA1576.2 18 bp overlap
Motif DE_60h DE_60h-THRB_MA1576.2 18 bp overlap
TRIM22 2 datasets
ChIP GM12878 ENCSR835XKS.TRIM22.GM12878 260 bp overlap
ChIP GM12878 ENCSR637QAM.TRIM22.GM12878 133 bp overlap
TRPS1 2 datasets
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
ZIM3 1 dataset
Motif DE_48h DE_48h-ZIM3_MA1709.2 11 bp overlap
ZNF175 1 dataset
Motif DE_48h DE_48h-ZNF175_MA2332.1 9 bp overlap
ZNF282 1 dataset
Motif DE_48h DE_48h-ZNF282_MA1154.2 15 bp overlap
ZNF530 1 dataset
Motif DE_48h DE_48h-ZNF530_MA1981.2 14 bp overlap
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