chr7 : 514,963 515,154
191 bp 75 TFs 2 linked genes
This 191 bp open chromatin element is linked to PDGFA and PDGFA-DT and is bound by 75 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
PDGFA 5.1 kb Proximal Proximity
PDGFA-DT 5.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:509,963 – 520,154
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
75 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP WTC11 ENCFF556XTF 114 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 191 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 154 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 191 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 191 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 191 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 191 bp overlap
BRD4 8 datasets
ChIP SUM159PT_DMSO_24h GSE87418.BRD4.SUM159PT_DMSO_24h 191 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 191 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 181 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 191 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 191 bp overlap
ChIP SW480 GSE73319.BRD4.SW480 191 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 191 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 191 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 181 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 104 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 110 bp overlap
CTCF 1 dataset
ChIP SUM159 GSE46055.CTCF.SUM159 140 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 103 bp overlap
ELF1 2 datasets
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 124 bp overlap
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 191 bp overlap
EP300 1 dataset
ChIP tibial nerve ENCFF346AYA 89 bp overlap
ESR1 3 datasets
ChIP Ishikawa_DMSO GSE132426.ESR1.Ishikawa_DMSO 169 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 117 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 191 bp overlap
EZH2 4 datasets
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 176 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 191 bp overlap
ChIP neural progenitor cell ENCFF018MKA 191 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 95 bp overlap
GTF2I 1 dataset
ChIP WTC11 ENCFF255XXZ 145 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 191 bp overlap
IRF1 1 dataset
ChIP K-562 ENCSR000EGT.IRF1.K-562 186 bp overlap
JUN 3 datasets
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 191 bp overlap
ChIP MDA-BoM-1833_shp27 GSE112444.JUN.MDA-BoM-1833_shp27 167 bp overlap
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 162 bp overlap
JUNB 1 dataset
ChIP Karpas-299 GSE151413.JUNB.Karpas-299 191 bp overlap
KDM1A 2 datasets
ChIP H1 ENCFF696SGD 92 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 67 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 191 bp overlap
KLF5 3 datasets
ChIP ESO-26 GSE132680.KLF5.ESO-26 137 bp overlap
ChIP HEK293_E419K GSE88976.KLF5.HEK293_E419K 191 bp overlap
ChIP KATO-III GSE51705.KLF5.KATO-III 191 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 149 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 191 bp overlap
MED26 1 dataset
ChIP U2OS_SHEP400 GSE73742.MED26.U2OS_SHEP400 184 bp overlap
NFKB1 2 datasets
ChIP HEK293T GSE129618.NFKB1.HEK293T 108 bp overlap
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 147 bp overlap
NRF1 1 dataset
ChIP HMEC-1 GSE67867.NRF1.HMEC-1 123 bp overlap
PBX1 1 dataset
ChIP A-549 ENCSR637RKG.PBX1.A-549 143 bp overlap
PBX2 1 dataset
ChIP K562 ENCFF286KMN 191 bp overlap
PBX3 3 datasets
ChIP GM12878 ENCFF285BQQ 191 bp overlap
ChIP GM12878 ENCSR000BGR.PBX3.GM12878 126 bp overlap
ChIP SK-N-SH ENCFF876BMC 191 bp overlap
PKNOX1 6 datasets
ChIP GM12878 ENCFF589FCY 184 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 191 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 191 bp overlap
ChIP K562 ENCFF236IUS 191 bp overlap
ChIP MCF-7 ENCFF116OCS 191 bp overlap
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 191 bp overlap
POLR2A 16 datasets
ChIP GM23338 ENCFF450WCS 93 bp overlap
ChIP H54 ENCFF398BXN 172 bp overlap
ChIP Peyer's patch ENCFF767HVN 191 bp overlap
ChIP body of pancreas ENCFF727UBE 191 bp overlap
ChIP esophagus muscularis mucosa ENCFF759BBR 191 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 191 bp overlap
ChIP gastroesophageal sphincter ENCFF070PCA 191 bp overlap
ChIP gastroesophageal sphincter ENCFF238INU 191 bp overlap
ChIP prostate gland ENCFF832RQK 171 bp overlap
ChIP prostate gland ENCFF881OMH 142 bp overlap
ChIP sigmoid colon ENCFF725QFT 102 bp overlap
ChIP sigmoid colon ENCFF748YVT 191 bp overlap
ChIP sigmoid colon ENCFF754JQR 191 bp overlap
ChIP stomach ENCFF607ZPU 175 bp overlap
ChIP tibial nerve ENCFF983HAU 191 bp overlap
ChIP transverse colon ENCFF607LKE 191 bp overlap
POU2F2 1 dataset
ChIP HNPC_UNDIF GSE74814.POU2F2.HNPC_UNDIF 72 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 124 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 129 bp overlap
RELA 1 dataset
ChIP 786-O GSE86092.RELA.786-O 97 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 152 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 191 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 110 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 75 bp overlap
SMAD3 1 dataset
ChIP SUM159PT GSE130364.SMAD3.SUM159PT 191 bp overlap
SMARCA4 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 152 bp overlap
SMARCC1 3 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 191 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 59 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 191 bp overlap
SMC1 2 datasets
ChIP DKO GSE131606.SMC1.DKO 81 bp overlap
ChIP HCAEC GSE101921.SMC1.HCAEC 191 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 168 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 133 bp overlap
SP1 1 dataset
ChIP HEK293T ERP007114.SP1.HEK293T 183 bp overlap
SP2 1 dataset
ChIP HEK293 ENCSR807LQP.SP2.HEK293 119 bp overlap
SP4 2 datasets
ChIP HEK293 GSE76494.SP4.HEK293 187 bp overlap
ChIP WA01 ENCSR000BQV.SP4.WA01 155 bp overlap
STAG1 1 dataset
ChIP MCF-7_E2_SHCTCF ERP000209.STAG1.MCF-7_E2_SHCTCF 102 bp overlap
SUPT5H 1 dataset
ChIP U2OS_siMYC GSE115365.SUPT5H.U2OS_siMYC 153 bp overlap
SUZ12 1 dataset
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 191 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 122 bp overlap
TAF15 2 datasets
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 136 bp overlap
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 143 bp overlap
TBP 2 datasets
ChIP hESC GSE122298.TBP.hESC 147 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 104 bp overlap
TCF12 1 dataset
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 58 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 67 bp overlap
TEAD1 2 datasets
ChIP H69 GSE62274.TEAD1.H69 131 bp overlap
ChIP MSTO GSE68170.TEAD1.MSTO 191 bp overlap
TEAD4 2 datasets
ChIP H1 ENCFF778PAX 191 bp overlap
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 191 bp overlap
TP53 1 dataset
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 123 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 76 bp overlap
ZBTB21 1 dataset
ChIP WTC11 ENCFF677ZYY 77 bp overlap
ZBTB26 1 dataset
ChIP HEK293 ENCFF752TCU 191 bp overlap
ZBTB33 1 dataset
ChIP K562 ENCFF427SDV 52 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 104 bp overlap
ZMAT4 1 dataset
ChIP WTC11 ENCFF608UXZ 166 bp overlap
ZNF184 1 dataset
ChIP WTC11 ENCFF352POG 122 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 129 bp overlap