chr6 : 152,297,066 152,297,532
466 bp 85 TFs 1 linked gene
This 466 bp open chromatin element is linked to SYNE1 and is bound by 85 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SYNE1 4.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:152,292,066 – 152,302,532
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
85 transcription factors
Source
Cell type
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 275 bp overlap
AR 3 datasets
ChIP MCF-7 GSE48930.AR.MCF-7 171 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 428 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 78 bp overlap
ARID3A 2 datasets
ChIP Hep-G2 ENCSR000EDP.ARID3A.Hep-G2 83 bp overlap
ChIP HepG2 ENCFF341DES 223 bp overlap
ARID4A 2 datasets
ChIP HepG2 ENCFF142DIE 460 bp overlap
ChIP HepG2 ENCFF142DIE 466 bp overlap
ARID5B 1 dataset
ChIP HepG2 ENCFF964FWK 242 bp overlap
ASH2L 1 dataset
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 217 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 167 bp overlap
BRD4 1 dataset
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 224 bp overlap
CASZ1 2 datasets
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 367 bp overlap
ChIP rhabdomyosarcoma_Trametinib GSE126143.CASZ1.rhabdomyosarcoma_Trametinib 191 bp overlap
CBFB 1 dataset
ChIP Hep-G2 ENCSR479RZV.CBFB.Hep-G2 307 bp overlap
DMAP1 1 dataset
ChIP Hep-G2 ENCSR670YPQ.DMAP1.Hep-G2 201 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 399 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 244 bp overlap
EBF1 1 dataset
ChIP ASC GSE54889.EBF1.ASC 150 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 394 bp overlap
EHMT2 1 dataset
ChIP HepG2 ENCFF004KYI 413 bp overlap
ERF 1 dataset
ChIP HepG2 ENCFF647PIT 222 bp overlap
FOXA1 4 datasets
ChIP HepG2 ENCFF207NVJ 88 bp overlap
ChIP HepG2 ENCFF361KNY 72 bp overlap
ChIP HepG2 ENCFF740VZW 93 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 182 bp overlap
FOXA2 1 dataset
ChIP HepG2 ENCFF570ABM 193 bp overlap
FOXA3 1 dataset
ChIP HepG2 ENCFF005KGL 155 bp overlap
FOXP4 1 dataset
ChIP Hep-G2 ENCSR232LLP.FOXP4.Hep-G2 140 bp overlap
GABPA 1 dataset
ChIP Hep-G2 GSE72082.GABPA.Hep-G2 170 bp overlap
HDAC2 3 datasets
ChIP HepG2 ENCFF990GUQ 282 bp overlap
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 255 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 342 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 212 bp overlap
HNF1A 5 datasets
ChIP HEE_1 GSE76376.HNF1A.HEE_1 109 bp overlap
ChIP HEE_5 GSE76376.HNF1A.HEE_5 67 bp overlap
ChIP Hep-G2 ENCSR800QIT.HNF1A.Hep-G2 143 bp overlap
ChIP HepG2 ENCFF540TRC 309 bp overlap
ChIP HepG2 ENCFF540TRC 460 bp overlap
HNF1B 1 dataset
ChIP HepG2 ENCFF928THX 401 bp overlap
ISL2 1 dataset
ChIP HepG2 ENCFF742RIP 214 bp overlap
KDM1A 2 datasets
ChIP HepG2 ENCFF240UWG 171 bp overlap
ChIP HepG2 ENCFF240UWG 388 bp overlap
KLF6 1 dataset
ChIP Hep-G2 ENCSR757EKM.KLF6.Hep-G2 151 bp overlap
KLF9 1 dataset
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 374 bp overlap
MAFF 1 dataset
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
MAX 1 dataset
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 267 bp overlap
MED13 1 dataset
ChIP HepG2 ENCFF143ZBX 208 bp overlap
MIXL1 1 dataset
ChIP HepG2 ENCFF817YFO 135 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 203 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 296 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 209 bp overlap
MYOD1 6 datasets
ChIP RD GSE137168.MYOD1.RD 336 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 421 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 420 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 222 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 334 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 302 bp overlap
MYPOP 1 dataset
ChIP HepG2 ENCFF176TQL 256 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 199 bp overlap
NR2C2 2 datasets
ChIP HepG2 ENCFF944PRH 380 bp overlap
ChIP HepG2 ENCFF944PRH 466 bp overlap
ONECUT1 1 dataset
ChIP HepG2 ENCFF243FIR 106 bp overlap
PGR 1 dataset
Motif DE_12h DE_12h-PGR_MA2327.1 9 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 369 bp overlap
REPIN1 1 dataset
ChIP HepG2 ENCFF598VSY 397 bp overlap
REST 1 dataset
ChIP liver ENCSR893QWP.REST.liver 55 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 143 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 375 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 466 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 240 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 190 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 255 bp overlap
SIX4 1 dataset
ChIP HepG2 ENCFF372NPG 267 bp overlap
SNAI2 4 datasets
ChIP RD GSE137168.SNAI2.RD 250 bp overlap
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 325 bp overlap
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 194 bp overlap
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 237 bp overlap
SP2 1 dataset
ChIP K-562 ENCSR000BNL.SP2.K-562 130 bp overlap
TARDBP 1 dataset
ChIP HepG2 ENCFF356JNC 385 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 162 bp overlap
TEAD1 2 datasets
ChIP HepG2 ENCFF661PNM 228 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 128 bp overlap
TEAD2 1 dataset
ChIP HepG2 ENCFF261IHC 272 bp overlap
TEAD3 2 datasets
ChIP HepG2 ENCFF054UUL 281 bp overlap
ChIP HepG2 ENCFF054UUL 328 bp overlap
TEAD4 1 dataset
ChIP HepG2 ENCFF250NXO 199 bp overlap
TFDP1 1 dataset
ChIP HepG2 ENCFF717XKC 272 bp overlap
TFDP2 1 dataset
ChIP Hep-G2 ENCSR069JKP.TFDP2.Hep-G2 185 bp overlap
THRA 2 datasets
Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap
ChIP HepG2 ENCFF025KMX 173 bp overlap
TSC22D2 1 dataset
ChIP HepG2 ENCFF869LPB 147 bp overlap
YY1 6 datasets
ChIP Hep-G2 ENCSR000BNT.YY1.Hep-G2 160 bp overlap
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 235 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 218 bp overlap
ChIP liver ENCFF400MBC 278 bp overlap
ChIP liver ENCFF515BWJ 340 bp overlap
ChIP liver ENCSR994YLZ.YY1.liver 229 bp overlap
ZBTB32 1 dataset
Motif DE_12h DE_12h-ZBTB32_MA1580.1 10 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 156 bp overlap
ZFP64 1 dataset
ChIP Hep-G2 ENCSR487CPI.ZFP64.Hep-G2 232 bp overlap
ZFX 2 datasets
ChIP HCT-116 GSE102616.ZFX.HCT-116 295 bp overlap
ChIP HCT-116 ENCSR503GVO.ZFX.HCT-116 296 bp overlap
ZFY 2 datasets
ChIP HepG2 ENCFF106ELT 206 bp overlap
ChIP HepG2 ENCFF106ELT 413 bp overlap
ZMYM4 1 dataset
ChIP HepG2 ENCFF567SQY 388 bp overlap
ZNF18 2 datasets
ChIP HepG2 ENCFF479ZIQ 294 bp overlap
ChIP HepG2 ENCFF479ZIQ 466 bp overlap
ZNF184 1 dataset
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
ZNF230 1 dataset
ChIP HepG2 ENCFF370ATB 466 bp overlap
ZNF343 1 dataset
ChIP HepG2 ENCFF003KCM 466 bp overlap
ZNF468 1 dataset
ChIP HEK293T GSE78099.ZNF468.HEK293T 192 bp overlap
ZNF572 1 dataset
ChIP HepG2 ENCFF507EFS 361 bp overlap
ZNF574 2 datasets
ChIP HepG2 ENCFF206MMY 258 bp overlap
ChIP HepG2 ENCFF206MMY 458 bp overlap
ZNF644 1 dataset
ChIP HepG2 ENCFF352VGJ 255 bp overlap
ZSCAN29 2 datasets
ChIP HepG2 ENCFF212SBM 283 bp overlap
ChIP HepG2 ENCFF212SBM 466 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap