chr1 : 111,617,926 111,618,510
584 bp 90 TFs 4 linked genes
This 584 bp open chromatin element is linked to 4 target genes and is bound by 90 transcription factors.
Linked Genes
4 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
RAP1A 1.3 kb Proximal Proximity
DDX20 137.5 kb Distal Multiome
ATP5PB 168.8 kb Distal Multiome
WDR77 169.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:111,612,926 – 111,623,510
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
90 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 338 bp overlap
ChIP K562 ENCFF938UXQ 211 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 313 bp overlap
BRD4 1 dataset
ChIP CLL_patient1 GSE109411.BRD4.CLL_patient1 356 bp overlap
CBFA2T3 1 dataset
ChIP K562 ENCFF673OEZ 395 bp overlap
CTBP1 2 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 277 bp overlap
ChIP K562 ENCFF403WPG 441 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 182 bp overlap
DPF2 3 datasets
ChIP K-562 ENCSR219BXP.DPF2.K-562 358 bp overlap
ChIP K562 ENCFF775HUO 541 bp overlap
ChIP K562 ENCFF775HUO 336 bp overlap
DUX4 1 dataset
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCFF692SMY 457 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 358 bp overlap
EP300 1 dataset
ChIP K-562 ENCSR000EGE.EP300.K-562 135 bp overlap
ESR1 5 datasets
ChIP MCF-7 GSE76893.ESR1.MCF-7 158 bp overlap
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 273 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 294 bp overlap
ChIP MCF-7_shCtrl GSE125594.ESR1.MCF-7_shCtrl 206 bp overlap
ChIP MCF-7_shTEAD4 GSE125594.ESR1.MCF-7_shTEAD4 252 bp overlap
ESRRA 5 datasets
Motif DE_48h DE_48h-ESRRA_MA0592.4 9 bp overlap
ChIP GM12878 ENCFF760DZX 357 bp overlap
ChIP GM12878 ENCFF760DZX 190 bp overlap
ChIP K-562 ENCSR486IFJ.ESRRA.K-562 444 bp overlap
ChIP K562 ENCFF968PEP 332 bp overlap
ESRRB 1 dataset
Motif DE_48h DE_48h-ESRRB_MA0141.4 10 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 300 bp overlap
ETV6 1 dataset
ChIP GM12878 GSE97661.ETV6.GM12878 253 bp overlap
Esrrg 1 dataset
Motif DE_48h DE_48h-Esrrg_MA0643.2 9 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 310 bp overlap
ChIP DE DE-FOXA2-1 452 bp overlap
ChIP DE DE-FOXA2-2 401 bp overlap
FOXK2 2 datasets
ChIP K-562 ENCSR508DQA.FOXK2.K-562 318 bp overlap
ChIP K562 ENCFF851PFH 342 bp overlap
FOXP2 1 dataset
Motif DE_48h DE_48h-FOXP2_MA0593.2 9 bp overlap
Foxl2 1 dataset
Motif DE_48h DE_48h-Foxl2_MA1607.2 10 bp overlap
GATA1 11 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 111 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 165 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 55 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 172 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 164 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 265 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 213 bp overlap
ChIP K562 ENCFF094CMK 251 bp overlap
ChIP erythroblast ENCFF867JAR 430 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 390 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 228 bp overlap
GATA2 4 datasets
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
ChIP K-562 ENCSR000EWG.GATA2.K-562 131 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 312 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 236 bp overlap
GATA3 4 datasets
ChIP CD4_TH2 GSE72266.GATA3.CD4_TH2 237 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 255 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 164 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 148 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 584 bp overlap
ChIP DE DE-GATA4-2 584 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 315 bp overlap
GATA5 2 datasets
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 527 bp overlap
ChIP DE DE-GATA6-2 561 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 352 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 399 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 307 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 566 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 407 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 357 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 228 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 436 bp overlap
ChIP foregut GSE117136.GATA6.foregut 266 bp overlap
Gata3 2 datasets
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR711VWL.HDAC1.K-562 287 bp overlap
ChIP K562 ENCFF968WBH 392 bp overlap
HDAC2 3 datasets
ChIP K-562 ENCSR075HTM.HDAC2.K-562 298 bp overlap
ChIP K-562 ENCSR893WSB.HDAC2.K-562 295 bp overlap
ChIP K562 ENCFF744ALD 382 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 356 bp overlap
IKZF1 2 datasets
ChIP GM12878 ENCFF753XDO 492 bp overlap
ChIP GM12878 ENCFF824TGK 535 bp overlap
IKZF2 3 datasets
ChIP GM12878 ENCFF238LYK 566 bp overlap
ChIP GM12878 ENCFF238LYK 399 bp overlap
ChIP GM12878 ENCFF918AID 551 bp overlap
IRF4 1 dataset
ChIP GM12878 ENCSR000BGY.IRF4.GM12878 181 bp overlap
IRF6 1 dataset
Motif DE_48h DE_48h-IRF6_MA1509.1 9 bp overlap
MAF 2 datasets
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 208 bp overlap
ChIP lymphocyte_Th17_IL10+_Day5 GSE101389.MAF.lymphocyte_Th17_IL10+_Day5 258 bp overlap
MAFF 2 datasets
Motif DE_48h DE_48h-MAFF_MA0495.4 11 bp overlap
Motif DE_48h DE_48h-MAFF_MA0495.4 11 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCFF995GXC 146 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCFF615CWQ 571 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 310 bp overlap
Mafb 2 datasets
Motif DE_48h DE_48h-Mafb_MA0117.3 11 bp overlap
Motif DE_48h DE_48h-Mafb_MA0117.3 11 bp overlap
NCOR1 1 dataset
ChIP K-562 ENCSR798ILC.NCOR1.K-562 210 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 481 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 199 bp overlap
NR2C1 1 dataset
Motif DE_48h DE_48h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_48h DE_48h-NR2C2_MA1536.2 6 bp overlap
NR2F1 3 datasets
Motif DE_48h DE_48h-NR2F1_MA0017.3 12 bp overlap
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 270 bp overlap
ChIP K562 ENCFF221HJH 452 bp overlap
NR2F2 1 dataset
Motif DE_48h DE_48h-NR2F2_MA1111.2 7 bp overlap
NR2F6 2 datasets
ChIP K-562 ENCSR707QWA.NR2F6.K-562 207 bp overlap
ChIP K562 ENCFF674RQA 457 bp overlap
NR5A1 1 dataset
Motif DE_48h DE_48h-NR5A1_MA1540.3 12 bp overlap
NRL 1 dataset
Motif DE_48h DE_48h-NRL_MA0842.3 12 bp overlap
Nr1H2 1 dataset
Motif DE_48h DE_48h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_48h DE_48h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_48h DE_48h-Nr1h3_MA2337.1 6 bp overlap
Nr5A2 1 dataset
Motif DE_48h DE_48h-Nr5A2_MA0505.3 9 bp overlap
POLR2A 3 datasets
ChIP GM12892 ENCFF245LYF 545 bp overlap
ChIP GM12892 ENCFF245LYF 94 bp overlap
ChIP GM12892 ENCFF506PGQ 448 bp overlap
POU2F2 2 datasets
ChIP GM12878 ENCFF207RKY 321 bp overlap
ChIP GM12891 ENCFF166YPP 311 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 143 bp overlap
PRDM9 1 dataset
Motif DE_48h DE_48h-PRDM9_MA1723.2 20 bp overlap
Ppara 1 dataset
Motif DE_48h DE_48h-Ppara_MA2338.1 7 bp overlap
RBPJ 2 datasets
ChIP K562 ENCFF607OWI 321 bp overlap
ChIP NHEK GSE29498.RBPJ.NHEK 151 bp overlap
RFX5 1 dataset
ChIP MCF-7 ENCFF983ILY 177 bp overlap
RORA 1 dataset
Motif DE_48h DE_48h-RORA_MA0071.1 10 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 254 bp overlap
SMARCA4 2 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 330 bp overlap
ChIP K562 ENCFF506JCB 397 bp overlap
SMARCE1 2 datasets
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 380 bp overlap
ChIP K562 ENCFF690CFF 461 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 276 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 260 bp overlap
SOX21 1 dataset
Motif DE_48h DE_48h-SOX21_MA0866.1 15 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 247 bp overlap
ChIP K562 ENCFF059YCJ 366 bp overlap
SPI1 2 datasets
ChIP GM12891 ENCFF563IUT 241 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 153 bp overlap
SPIB 1 dataset
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 215 bp overlap
SREBF1 1 dataset
Motif DE_48h DE_48h-SREBF1_MA0595.1 10 bp overlap
SREBF2 1 dataset
Motif DE_48h DE_48h-SREBF2_MA0596.1 10 bp overlap
TAL1 1 dataset
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 155 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 374 bp overlap
TRIM22 2 datasets
ChIP GM12878 ENCSR835XKS.TRIM22.GM12878 252 bp overlap
ChIP GM12878 ENCSR637QAM.TRIM22.GM12878 204 bp overlap
TRPS1 2 datasets
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
ZBTB2 1 dataset
ChIP K-562 ENCSR230PTV.ZBTB2.K-562 324 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 233 bp overlap
ZEB2 2 datasets
ChIP K-562 ENCSR004GKA.ZEB2.K-562 284 bp overlap
ChIP K562 ENCFF795CMH 389 bp overlap
ZNF214 1 dataset
Motif DE_48h DE_48h-ZNF214_MA1975.2 13 bp overlap