chr6 : 38,477,364 38,478,181
817 bp 82 TFs 2 linked genes
This 817 bp open chromatin element is linked to BTBD9 and GLO1 and is bound by 82 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
BTBD9 162.1 kb Distal Multiome
GLO1 225.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:38,472,364 – 38,483,181
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
82 transcription factors
Source
Cell type
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 597 bp overlap
ChIP H1 ENCFF399KAM 395 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 473 bp overlap
ATF2 2 datasets
ChIP H1 ENCFF295GZO 438 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 370 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 289 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 331 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 445 bp overlap
BRD4 1 dataset
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 248 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 323 bp overlap
CDK9 1 dataset
ChIP MV4-11_DMSO GSE82116.CDK9.MV4-11_DMSO 224 bp overlap
CEBPA 1 dataset
ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 97 bp overlap
CEBPB 2 datasets
ChIP H1 ENCFF871PTR 261 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 138 bp overlap
CHD7 3 datasets
ChIP WA01 ENCSR000AVA.CHD7.WA01 196 bp overlap
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 213 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 474 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 335 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 345 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 161 bp overlap
EGR1 2 datasets
ChIP H1 ENCFF451BLH 261 bp overlap
ChIP H1 ENCFF451BLH 194 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 751 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 219 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 148 bp overlap
ERG 1 dataset
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 201 bp overlap
ETS1 3 datasets
ChIP HUVEC-C_12h GSE93030.ETS1.HUVEC-C_12h 159 bp overlap
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 115 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.ETS1.HUVEC-C_VEGF_12h 159 bp overlap
ETV2 1 dataset
ChIP induced-endothelial-cell_Veh GSE123906.ETV2.induced-endothelial-cell_Veh 167 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 327 bp overlap
EVI1 2 datasets
ChIP SKH1 GSE87283.EVI1.SKH1 179 bp overlap
ChIP SKH1_10d GSE87283.EVI1.SKH1_10d 134 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 558 bp overlap
FLI1 3 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 366 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 169 bp overlap
ChIP UAE_ZINC GSE23730.FLI1.UAE_ZINC 88 bp overlap
FOSL2 1 dataset
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 157 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 341 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 270 bp overlap
ChIP DE DE-FOXA2-1 817 bp overlap
ChIP DE DE-FOXA2-2 817 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 198 bp overlap
FOXL2 2 datasets
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 146 bp overlap
ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 111 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 177 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 126 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 817 bp overlap
ChIP DE DE-GATA4-2 817 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 505 bp overlap
ChIP foregut GSE117136.GATA4.foregut 554 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 589 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 304 bp overlap
GATA6 16 datasets
ChIP AGS GSE51705.GATA6.AGS 423 bp overlap
ChIP AGS GSE51936.GATA6.AGS 146 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 178 bp overlap
ChIP DE DE-GATA6-1 817 bp overlap
ChIP DE DE-GATA6-2 817 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 817 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 817 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 817 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 817 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 817 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 817 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 817 bp overlap
ChIP foregut GSE117136.GATA6.foregut 500 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 254 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 541 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 417 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 195 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 210 bp overlap
JMJD1C 3 datasets
ChIP HL-60 GSE63484.JMJD1C.HL-60 161 bp overlap
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 109 bp overlap
ChIP THP-1 GSE63484.JMJD1C.THP-1 162 bp overlap
JUN 9 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 561 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 470 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 607 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 698 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 534 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 570 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 686 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 686 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 620 bp overlap
JUND 4 datasets
ChIP H1 ENCFF010YXS 233 bp overlap
ChIP H1 ENCFF468JZD 170 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 210 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 142 bp overlap
KDM1A 2 datasets
ChIP Kasumi-1_DMSO GSE71739.KDM1A.Kasumi-1_DMSO 164 bp overlap
ChIP Kasumi-1_GSK690 GSE71739.KDM1A.Kasumi-1_GSK690 172 bp overlap
L3MBTL2 1 dataset
ChIP HEK293T ENCFF482NJV 323 bp overlap
LDB1 2 datasets
ChIP Kasumi-1_ctrl GSE121280.LDB1.Kasumi-1_ctrl 148 bp overlap
ChIP Kasumi-1_siRE GSE121280.LDB1.Kasumi-1_siRE 192 bp overlap
LMO2 2 datasets
ChIP Kasumi-1_SICTR GSE60130.LMO2.Kasumi-1_SICTR 176 bp overlap
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 168 bp overlap
LYL1 1 dataset
ChIP THP-1 GSE63484.LYL1.THP-1 148 bp overlap
MAX 5 datasets
ChIP H1 ENCFF601FOM 264 bp overlap
ChIP H1 ENCFF914VQY 277 bp overlap
ChIP NB4 ENCFF966MWB 194 bp overlap
ChIP P493-6_CMYC_1H GSE36354.MAX.P493-6_CMYC_1H 185 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 339 bp overlap
MAZ 1 dataset
ChIP HEK293 GSE76494.MAZ.HEK293 120 bp overlap
MLLT3 1 dataset
ChIP THP-1 GSE79899.MLLT3.THP-1 196 bp overlap
MNT 2 datasets
ChIP Hep-G2 ENCSR261EDU.MNT.Hep-G2 209 bp overlap
ChIP HepG2 ENCFF701PYP 347 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 464 bp overlap
MXI1 1 dataset
ChIP neural ENCSR934NHU.MXI1.neural 345 bp overlap
MYB 2 datasets
ChIP Loucy GSE94000.MYB.Loucy 339 bp overlap
ChIP THP-1 GSE90769.MYB.THP-1 131 bp overlap
MYC 1 dataset
ChIP Jurkat GSE83777.MYC.Jurkat 213 bp overlap
MYCN 1 dataset
ChIP CHP-134 GSE129588.MYCN.CHP-134 199 bp overlap
NANOG 9 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 600 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 499 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 184 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 207 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 641 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 592 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 597 bp overlap
ChIP hESC GSE18292.NANOG.hESC 264 bp overlap
ChIP hESC GSE18292.NANOG.hESC 187 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 155 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 234 bp overlap
ONECUT2 1 dataset
ChIP PC-3_hypoxia GSE106305.ONECUT2.PC-3_hypoxia 79 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
POU5F1 5 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 563 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 121 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 289 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 319 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 189 bp overlap
RUNX1 8 datasets
ChIP Kasumi-1 GSE45738.RUNX1.Kasumi-1 220 bp overlap
ChIP Kasumi-1 GSE62847.RUNX1.Kasumi-1 187 bp overlap
ChIP ME-1 GSE117138.RUNX1.ME-1 156 bp overlap
ChIP ME-1_KD GSE128771.RUNX1.ME-1_KD 156 bp overlap
ChIP NB4 GSE81992.RUNX1.NB4 239 bp overlap
ChIP SKH1 GSE87283.RUNX1.SKH1 169 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.RUNX1.SKH1_RUNX1-EVI1_KD 128 bp overlap
ChIP THP-1 GSE79899.RUNX1.THP-1 176 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 145 bp overlap
SIN3A 2 datasets
ChIP H1 ENCFF896IJG 212 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 111 bp overlap
SMAD2-3 3 datasets
ChIP HGrC1_C134W-TGF GSE138496.SMAD2-3.HGrC1_C134W-TGF 100 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 817 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 663 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 368 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 788 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 750 bp overlap
SMAD4 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.SMAD4.HGrC1_C134W-TGF 148 bp overlap
SMARCA4 5 datasets
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 261 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 142 bp overlap
ChIP NPC_R1159Q GSE122631.SMARCA4.NPC_R1159Q 168 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 528 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 464 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 672 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 482 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 255 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 780 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 357 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 553 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 801 bp overlap
SOX2 3 datasets
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 184 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 284 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 359 bp overlap
SPI1 2 datasets
ChIP KG-1 GSE128834.SPI1.KG-1 133 bp overlap
ChIP U-937 GSE128834.SPI1.U-937 166 bp overlap
STAT3 1 dataset
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 164 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 816 bp overlap
TAL1 1 dataset
ChIP TSU-1621MT GSE60477.TAL1.TSU-1621MT 201 bp overlap
TCF12 3 datasets
ChIP H1 ENCFF203EBH 217 bp overlap
ChIP Kasumi-1 GSE23730.TCF12.Kasumi-1 199 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 161 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 375 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 489 bp overlap
TRIM24 1 dataset
ChIP MOLM-13_IACS-9571 GSE100571.TRIM24.MOLM-13_IACS-9571 239 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 247 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 232 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 316 bp overlap
ZNF18 1 dataset
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 383 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 211 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 211 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 277 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 225 bp overlap