chr6:27,762,370–27,762,921

chr6 : 27,762,370 – 27,762,921

551 bp 65 TFs 8 linked genes

This 551 bp open chromatin element is linked to 8 target genes and is bound by 65 transcription factors.

Linked Genes

8 genes

Gene	Expression	Dist. to TSS	Distance	Link type
ENSG00000287252		4.9 kb	Proximal	Proximity
H2AC14		52.1 kb	Distal	Multiome
LINC01012		68.6 kb	Distal	Multiome
H2BC15		76.0 kb	Distal	Multiome
H2AC16		102.7 kb	Distal	Multiome
H1-5		104.9 kb	Distal	Multiome
H3C12		130.5 kb	Distal	Multiome
ZNF184		289.5 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

65 transcription factors

ASH2L 1 dataset

ChIP WA01 ENCSR850KIP.ASH2L.WA01 504 bp overlap

ChIP WA01 ENCSR000BQU.ATF2.WA01 159 bp overlap

BCOR 2 datasets

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 518 bp overlap

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 501 bp overlap

ChIP HUES-64 GSE104059.BRD1.HUES-64 543 bp overlap

BRD2 4 datasets

ChIP HUVEC-C GSE60171.BRD2.HUVEC-C 384 bp overlap

ChIP SUM149PT_DMSO GSE131097.BRD2.SUM149PT_DMSO 453 bp overlap

ChIP SUM149PT_JQ1 GSE131097.BRD2.SUM149PT_JQ1 551 bp overlap

ChIP SUM149PT_R_DMSO GSE131097.BRD2.SUM149PT_R_DMSO 423 bp overlap

BRD4 9 datasets

ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 178 bp overlap

ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 457 bp overlap

ChIP CLL_patient3_4h_CpG_BET GSE109411.BRD4.CLL_patient3_4h_CpG_BET 256 bp overlap

ChIP CLL_patient4_4h_CpG GSE109411.BRD4.CLL_patient4_4h_CpG 534 bp overlap

ChIP KK-1_DMSO GSE94732.BRD4.KK-1_DMSO 237 bp overlap

ChIP KK-1_JQ1 GSE94732.BRD4.KK-1_JQ1 346 bp overlap

ChIP MOLT-4_DMSO GSE79288.BRD4.MOLT-4_DMSO 551 bp overlap

ChIP hESC GSE33281.BRD4.hESC 61 bp overlap

ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 188 bp overlap

ChIP H9 GSE94418.BRF1.H9 188 bp overlap

ChIP hMSC GSE117084.CBX4.hMSC 171 bp overlap

ChIP WA01 ENCSR000AQK.CHD1.WA01 319 bp overlap

CREB1 4 datasets

ChIP GM23338 ENCFF432ZEW 269 bp overlap

ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 426 bp overlap

ChIP H1 ENCFF955PMP 242 bp overlap

ChIP WA01 ENCSR000BSN.CREB1.WA01 191 bp overlap

CTCF 2 datasets

ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 100 bp overlap

ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 187 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF460KDD 272 bp overlap

E2F1 2 datasets

ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 172 bp overlap

ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 308 bp overlap

ChIP WA01 ENCSR000BSI.E2F6.WA01 132 bp overlap

ChIP GM12878 ENCSR000BMB.ELF1.GM12878 149 bp overlap

ESR1 3 datasets

ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 178 bp overlap

ChIP MCF-7_TAMR_E2 GSE86538.ESR1.MCF-7_TAMR_E2 113 bp overlap

ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 399 bp overlap

EZH2 6 datasets

ChIP GM23338 ENCFF613YON 73 bp overlap

ChIP GM23338 ENCFF613YON 274 bp overlap

ChIP GM23338 ENCSR045YHA.EZH2.GM23338 171 bp overlap

ChIP GM23338 ENCSR045YHA.EZH2.GM23338 276 bp overlap

ChIP WA01 ENCSR000ASY.EZH2.WA01 256 bp overlap

ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 249 bp overlap

EZH2_phosphoT487 1 dataset

ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 551 bp overlap

FOXA1 2 datasets

ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 199 bp overlap

ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 439 bp overlap

GSPT2 1 dataset

ChIP HEK293T GSE35197.GSPT2.HEK293T 308 bp overlap

GTF3C2 1 dataset

ChIP H9 GSE94418.GTF3C2.H9 478 bp overlap

HMGXB4 1 dataset

ChIP WTC11 ENCFF962POR 512 bp overlap

HNF4A 1 dataset

ChIP hiPSC GSE104613.HNF4A.hiPSC 216 bp overlap

JARID2 2 datasets

ChIP AMIPS6 GSE48516.JARID2.AMIPS6 321 bp overlap

ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 319 bp overlap

ChIP 786-O GSE86092.JUN.786-O 276 bp overlap

ChIP DE_D1 S08-DE-d1-JUN-exp1 551 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 352 bp overlap

ChIP ESC S24-ESC-d0-JUN-exp1 312 bp overlap

ChIP HUES-8 GSE109524.JUN.HUES-8 298 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 551 bp overlap

KDM4A 1 dataset

ChIP WA01 ENCSR000AVC.KDM4A.WA01 484 bp overlap

KDM4C 1 dataset

ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 224 bp overlap

ChIP erythroid_R3R4 GSE43625.KLF1.erythroid_R3R4 100 bp overlap

ChIP K562 ENCFF398VJM 522 bp overlap

ChIP WTC11 ENCFF223QFY 543 bp overlap

MED26 1 dataset

ChIP HEK293T GSE121024.MED26.HEK293T 253 bp overlap

ChIP MOLT-3 GSE59657.MYB.MOLT-3 118 bp overlap

ChIP MOLT-3 GSE59657.MYB.MOLT-3 282 bp overlap

ChIP Raji GSE30726.MYC.Raji 388 bp overlap

ChIP NB-1643 GSE138295.MYCN.NB-1643 510 bp overlap

NFATC3 1 dataset

ChIP Hep-G2 GSE97661.NFATC3.Hep-G2 306 bp overlap

ChIP erythroid_R3R4 GSE43625.NFE2.erythroid_R3R4 126 bp overlap

NUTM1 1 dataset

ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 514 bp overlap

PCGF1 1 dataset

ChIP WA01 GSE104690.PCGF1.WA01 551 bp overlap

POLR2A 5 datasets

ChIP GM19099 ENCFF726IBN 138 bp overlap

ChIP H1 ENCFF566JSR 551 bp overlap

ChIP Raji ENCFF613VGX 419 bp overlap

ChIP erythroblast ENCFF498VMR 487 bp overlap

ChIP erythroblast ENCFF498VMR 286 bp overlap

POU5F1 2 datasets

ChIP DE_D1 DED1-OCT4_Batch_II 519 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 316 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 447 bp overlap

PTBP1 1 dataset

ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 239 bp overlap

RBBP5 2 datasets

ChIP H1 ENCFF905HFL 544 bp overlap

ChIP WA01 ENCSR000AQC.RBBP5.WA01 520 bp overlap

ChIP GM19099 ENCSR000EBI.RELA.GM19099 156 bp overlap

RNF2 2 datasets

ChIP WA09 GSE105028.RNF2.WA09 120 bp overlap

ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 199 bp overlap

RUNX1 1 dataset

ChIP Jurkat GSE85524.RUNX1.Jurkat 233 bp overlap

RUNX1T1 1 dataset

ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 156 bp overlap

ChIP WA01 GSE104690.RYBP.WA01 528 bp overlap

SAP30 4 datasets

ChIP H1 ENCFF149IOE 169 bp overlap

ChIP H1 ENCFF149IOE 451 bp overlap

ChIP WA01 ENCSR000ATR.SAP30.WA01 85 bp overlap

ChIP WA01 ENCSR000ATR.SAP30.WA01 331 bp overlap

SIN3A 2 datasets

ChIP WA01 ENCSR000EBO.SIN3A.WA01 551 bp overlap

ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 137 bp overlap

SMARCB1 1 dataset

ChIP HeLa-S3 ENCSR000EDK.SMARCB1.HeLa-S3 275 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 476 bp overlap

SUPT5H 2 datasets

ChIP MOLT-4_NVP2 GSE89384.SUPT5H.MOLT-4_NVP2 551 bp overlap

ChIP MOLT-4_SNS GSE89384.SUPT5H.MOLT-4_SNS 404 bp overlap

SUZ12 2 datasets

ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 228 bp overlap

ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 268 bp overlap

TAF1 3 datasets

ChIP H1 ENCFF478SZO 485 bp overlap

ChIP WA01 ENCSR000BHO.TAF1.WA01 79 bp overlap

ChIP WA01 ENCSR000BHO.TAF1.WA01 420 bp overlap

TBL1X 1 dataset

ChIP HEK293T GSE35197.TBL1X.HEK293T 189 bp overlap

ChIP H1 ENCFF859IIO 377 bp overlap

ChIP H1 ENCFF859IIO 263 bp overlap

ChIP WA01 ENCSR000ECB.TBP.WA01 551 bp overlap

ChIP hESC GSE122298.TBP.hESC 483 bp overlap

ChIP hESC_2h GSE122298.TBP.hESC_2h 551 bp overlap

ChIP hESC_8h GSE122298.TBP.hESC_8h 206 bp overlap

ChIP hiPSC_WTb_RNase-neg GSE128135.TBP.hiPSC_WTb_RNase-neg 317 bp overlap

ChIP hiPSC_WTb_RNase-pos GSE128135.TBP.hiPSC_WTb_RNase-pos 239 bp overlap

ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 137 bp overlap

ChIP H1 ENCFF524BTL 275 bp overlap

ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 144 bp overlap

ChIP WA01 ENCSR000BKD.YY1.WA01 356 bp overlap

ZBTB33 4 datasets

ChIP K-562 ENCSR876GXA.ZBTB33.K-562 551 bp overlap

ChIP K562 ENCFF427SDV 356 bp overlap

ChIP K562 ENCFF875HLX 108 bp overlap

ChIP K562 ENCFF875HLX 365 bp overlap

ZBTB48 1 dataset

ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 461 bp overlap

ZBTB7A 1 dataset

ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 310 bp overlap

ZFP69B 1 dataset

ChIP HEK293T GSE78099.ZFP69B.HEK293T 230 bp overlap

ZNF263 1 dataset

ChIP K-562 ENCSR000EWN.ZNF263.K-562 311 bp overlap

ChIP K-562 ENCSR195QFV.ZNF3.K-562 306 bp overlap

ZNF737 2 datasets

ChIP Hep-G2 ENCSR127IHN.ZNF737.Hep-G2 65 bp overlap

ChIP Hep-G2 ENCSR127IHN.ZNF737.Hep-G2 215 bp overlap